Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

30051 .. 31500

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggtttccaagaacactcaagtcatcccgaagaacaagtccaagacaacgacctcaaaatcaagcagcagctcatctggtcacgtcactcgaagaatggcaaaggttcagccaacaacatttgtggctttgccttttaagcctcgccaaccaatcatcaccctggaaagtttaggggcagggaagcatgtccctcgaagtgaagagagacaagctccaaacacaaaactaagggaacggtcgttctcacctgccttagatgacggtacgtctcaccccccagcaatgcaagtcatgatgactggagcaaccacgctcgaagagcaggtacctaatctgatggaagtggttcaaaagctcactaataccgtcgaagaaaaggatatgcatattgctcaactttggagcaggctcgagaaacaaaatgatgaggattctactaaggtcccatacaagaatgacaaagagaaacaagaagaaacttcaaagacaaatgacaaagacagtgaaagtctacttggttctttgtccgtccagcagctacaagacatgatcaataactctatcagagctcaatatggaggcccctctcgtgattctctcacatattccatatgggttccagccgctcaagaagaaggagtccaaaggaaagacaagggcttcggaagcaagtttgacaaggcaccgaagaagtttacaaaagaatcgatagccgtcaacattgccccagtcaaaatctctacacgagataaggaggttaagaaagcagagccaactcacacctacgacaaaacaaagtgttcgttgaaggaatggcaacaaaagacgtatcccttcccagattctgatgtggcaggcatgttggaagatcttcttgagaaaaaggtgatagaactcccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

301

Amino Acids

33.76

Weight (kDa)

9.1

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	259, 316
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	2 cut(s)	328, 685
AccBSI	CCGCTC	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	514
AciI	CCGC	1 cut(s)	627
AfaI	GTAC	2 cut(s)	268, 330
AgsI	TTSAA	3 cut(s)	353, 486, 811
AhdI	GACNNNNNGTC	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	162
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	72, 215, 358, 541, 572
AluI	AGCT	5 cut(s)	72, 215, 358, 541, 572
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	202, 276
AlwNI	CAGNNNCTG	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	3 cut(s)	66, 69, 538
ArsI	GACNNNNNNTTYG	4 cut(s)	23, 55, 647, 679
Asp700I	GAANNNNTTC	2 cut(s)	348, 873
Asp718I	GGTACC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	445, 584
AsuHPI	GGTGA	4 cut(s)	151, 240, 266, 901
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	328, 685
BanII	GRGCYC	1 cut(s)	574
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BauI	CACGAG	2 cut(s)	591, 747
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	3 cut(s)	78, 81, 550
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	701
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	164
BciVI	GTATCC	1 cut(s)	843
BclI	TGATCA	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	202, 276
BfuAI	ACCTGC	2 cut(s)	259, 316
BfuI	GTATCC	1 cut(s)	843
BglII	AGATCT	1 cut(s)	871
BisI	GCNGC	4 cut(s)	67, 70, 539, 627
BlsI	GCNGC	4 cut(s)	68, 71, 540, 628
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	445
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	445, 584
BmiI	GGNNCC	5 cut(s)	330, 447, 586, 621, 687
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	725
BmuI	ACTGGG	1 cut(s)	725
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpmI	CTGGAG	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	615, 899
Bsa29I	ATCGAT	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	307, 731
Bse3DI	GCAATG	2 cut(s)	291, 723
BseBI	CCWGG	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	291, 723
BseNI	ACTGG	2 cut(s)	307, 731
BseXI	GCAGC	3 cut(s)	78, 81, 550
BseYI	CCCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	585
BshNI	GGYRCC	2 cut(s)	328, 685
BshVI	ATCGAT	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	176, 431
BsmAI	GTCTC	2 cut(s)	202, 276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	176, 431
BsnI	GGCC	1 cut(s)	585
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	552, 871
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	1 cut(s)	585
BspDI	ATCGAT	1 cut(s)	710
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	5 cut(s)	330, 447, 586, 621, 687
BspMI	ACCTGC	2 cut(s)	259, 316
BspQI	GCTCTTC	1 cut(s)	315
BspT107I	GGYRCC	2 cut(s)	328, 685
BsrBI	CCGCTC	1 cut(s)	629
BsrDI	GCAATG	2 cut(s)	291, 723
BsrI	ACTGG	2 cut(s)	307, 731
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	552, 871
BssSI	CACGAG	2 cut(s)	591, 747
Bst2BI	CACGAG	2 cut(s)	591, 747
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	4 cut(s)	240, 266, 370, 506
Bst6I	CTCTTC	2 cut(s)	198, 315
BstC8I	GCNNGC	2 cut(s)	410, 859
BstDEI	CTNAG	3 cut(s)	230, 256, 441
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	555, 874
BstMAI	GTCTC	2 cut(s)	202, 276
BstMBI	GATC	2 cut(s)	552, 871
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 322, 669
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	2 cut(s)	191, 865
BstSCI	CCNGG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	78, 81, 550
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
Bsu15I	ATCGAT	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	843
BsuRI	GGCC	1 cut(s)	585
BsuTUI	ATCGAT	1 cut(s)	710
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	511
BveI	ACCTGC	2 cut(s)	259, 316
Cac8I	GCNNGC	2 cut(s)	410, 859
CaiI	CAGNNNCTG	1 cut(s)	848
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	445, 584
ClaI	ATCGAT	1 cut(s)	710
Csp6I	GTAC	2 cut(s)	267, 329
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	4 cut(s)	188, 295, 550, 862
CviQI	GTAC	2 cut(s)	267, 329
DdeI	CTNAG	3 cut(s)	230, 256, 441
DpnI	GATC	2 cut(s)	554, 873
DpnII	GATC	2 cut(s)	552, 871
DriI	GACNNNNNGTC	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	198, 315
Eam1105I	GACNNNNNGTC	1 cut(s)	268
EarI	CTCTTC	2 cut(s)	198, 315
Ecl136II	GAGCTC	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	445
Eco53kI	GAGCTC	1 cut(s)	572
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	572
EcoO109I	RGGNCCY	2 cut(s)	445, 584
EcoRII	CCWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	574
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	191, 298, 553, 865
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FaqI	GGGAC	2 cut(s)	176, 431
FatI	CATG	4 cut(s)	187, 294, 549, 861
FauNDI	CATATG	1 cut(s)	614
FbaI	TGATCA	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	67, 70, 539, 627
FokI	GGATG	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	4 cut(s)	67, 70, 539, 627
GluI	GCNGC	4 cut(s)	67, 70, 539, 627
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	585
Hin1II	CATG	4 cut(s)	191, 298, 553, 865
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	5 cut(s)	434, 596, 642, 707, 845
HphI	GGTGA	4 cut(s)	151, 240, 266, 901
Hpy166II	GTNNAC	3 cut(s)	515, 699, 721
Hpy188I	TCNGA	4 cut(s)	339, 569, 668, 850
Hpy188III	TCNNGA	6 cut(s)	28, 295, 415, 593, 632, 878
Hpy8I	GTNNAC	3 cut(s)	515, 699, 721
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	3 cut(s)	632, 805, 847
HpyCH4III	ACNGT	4 cut(s)	240, 266, 370, 506
HpyCH4IV	ACGT	3 cut(s)	84, 269, 830
HpyCH4V	TGCA	2 cut(s)	289, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 322, 669
HpyF3I	CTNAG	3 cut(s)	230, 256, 441
HpySE526I	ACGT	3 cut(s)	84, 269, 830
Hsp92II	CATG	4 cut(s)	191, 298, 553, 865
KpnI	GGTACC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	2 cut(s)	552, 871
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	3 cut(s)	220, 305, 405
Lsp1109I	GCAGC	3 cut(s)	78, 81, 550
MaeII	ACGT	3 cut(s)	84, 269, 830
MaeIII	GTNAC	2 cut(s)	80, 85
MalI	GATC	2 cut(s)	554, 873
MbiI	CCGCTC	1 cut(s)	629
MboI	GATC	2 cut(s)	552, 871
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	574
MlyI	GAGTC	1 cut(s)	651
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	7 cut(s)	64, 153, 204, 424, 575, 598, 751
Mph1103I	ATGCAT	1 cut(s)	390
MroXI	GAANNNNTTC	2 cut(s)	348, 873
MseI	TTAA	2 cut(s)	138, 762
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	139, 322, 669
NdeI	CATATG	1 cut(s)	614
NdeII	GATC	2 cut(s)	552, 871
NlaIII	CATG	4 cut(s)	191, 298, 553, 865
NlaIV	GGNNCC	5 cut(s)	330, 447, 586, 621, 687
NmuCI	GTSAC	2 cut(s)	80, 85
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	2 cut(s)	191, 865
PaeR7I	CTCGAG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	2 cut(s)	348, 873
PfeI	GAWTC	4 cut(s)	434, 596, 707, 845
PkrI	GCNGC	4 cut(s)	68, 71, 540, 628
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
PpuMI	RGGWCCY	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	574
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	5 cut(s)	330, 447, 586, 621, 687
PspPI	GGNCC	2 cut(s)	445, 584
PspPPI	RGGWCCY	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	871
RsaI	GTAC	2 cut(s)	268, 330
RsaNI	GTAC	2 cut(s)	267, 329
SacI	GAGCTC	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	138, 762
SatI	GCNGC	4 cut(s)	67, 70, 539, 627
Sau3AI	GATC	2 cut(s)	552, 871
Sau96I	GGNCC	2 cut(s)	445, 584
SchI	GAGTC	1 cut(s)	651
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	574
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	445
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	4 cut(s)	18, 413, 630, 878
SmoI	CTYRAG	4 cut(s)	18, 413, 630, 878
SsiI	CCGC	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	4 cut(s)	240, 266, 370, 506
TaiI	ACGT	3 cut(s)	87, 272, 833
TaqI	TCGA	6 cut(s)	91, 196, 318, 372, 414, 710
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	4 cut(s)	434, 596, 707, 845
Tru1I	TTAA	2 cut(s)	138, 762
Tru9I	TTAA	2 cut(s)	138, 762
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	80, 85
TseI	GCWGC	3 cut(s)	66, 69, 538
Tsp45I	GTSAC	2 cut(s)	80, 85
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	445
XceI	RCATGY	2 cut(s)	191, 865
XhoI	CTCGAG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	2 cut(s)	348, 873
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.