Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011242.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Reverse (-)

35672 .. 36529

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011242.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgacttccaagaacactcaagccatcccgaaaaacaaatccaagccaacgacctcgaaatcaagcagcaactcatctggtcacgtcacccgaagcatggcaaaggttcagctaacaacatttgtggctttgccttctaagcctggccaaccaatcatcaccctggaaagtttaggggtagggaaacatgtccctcgaagtggggagagacaagctccaaatacaaagtcaagggaactgtcgttctcacctgcctttgatgacaactcaagcactggatcataccatggaagtcctgatgctgaagaaagtaacacttctgggatgcttgagaaacaaaatgatgaggattctgctaaggttccatacaagaatgacaaagagaaacaagaagaaacttcaaagacaaatgacaaagacagtgaaggtctacttggttctttgtccgtccagcagctgcaagacatgatcaataactctatcagagctcaatatggaggcccctctcatgattctctcacatattccaagccatacaaaaaaagagtggatagccttaggatgccatatgggtaccagccgcccaagtttcagcaattcgaggggaagagcaatccaaaacaacatattgctcattttttcgagacttgtaacaatgctggaatggagggagaatatcttgttaagcattttgtactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

233

Amino Acids

25.72

Weight (kDa)

8.95

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	430
AciI	CCGC	1 cut(s)	581
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	575, 696
AfiI	CCNNNNNNNGG	2 cut(s)	97, 200
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	402
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	142, 162
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	4 cut(s)	112, 215, 457, 488
AluI	AGCT	4 cut(s)	112, 215, 457, 488
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	202, 638
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	2 cut(s)	145, 499
ApeKI	GCWGC	3 cut(s)	66, 454, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp718I	GGTACC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	79, 151, 240
AxyI	CCTNAGG	1 cut(s)	557
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	78, 444, 466
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	144, 164
BclI	TGATCA	1 cut(s)	468
BcoDI	GTCTC	2 cut(s)	202, 638
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	4 cut(s)	67, 455, 458, 581
BlsI	GCNGC	4 cut(s)	68, 456, 459, 582
Bme1390I	CCNGG	2 cut(s)	144, 164
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	3 cut(s)	363, 502, 575
BmrFI	CCNGG	2 cut(s)	144, 164
BmsI	GCATC	3 cut(s)	289, 315, 552
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	253, 350
BsaJI	CCNNGG	2 cut(s)	162, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 200
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	1 cut(s)	557
BseBI	CCWGG	2 cut(s)	144, 164
BseDI	CCNNGG	2 cut(s)	162, 286
BseGI	GGATG	3 cut(s)	24, 330, 567
BseLI	CCNNNNNNNGG	2 cut(s)	97, 200
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	78, 444, 466
BshFI	GGCC	2 cut(s)	147, 501
BshNI	GGYRCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	97, 200
BsmAI	GTCTC	2 cut(s)	202, 638
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	147, 501
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	278, 468
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	2 cut(s)	147, 501
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	3 cut(s)	363, 502, 575
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	162, 286
BssMI	GATC	2 cut(s)	278, 468
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	144, 164
Bst4CI	ACNGT	2 cut(s)	240, 422
Bst6I	CTCTTC	1 cut(s)	602
BstDEI	CTNAG	3 cut(s)	138, 357, 557
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	24, 330, 567
BstKTI	GATC	2 cut(s)	281, 471
BstMAI	GTCTC	2 cut(s)	202, 638
BstMBI	GATC	2 cut(s)	278, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	144, 164
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	142, 162
BstV1I	GCAGC	3 cut(s)	78, 444, 466
Bsu36I	CCTNAGG	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	147, 501
BtgI	CCRYGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	24, 330, 567
BtsIMutI	CAGTG	2 cut(s)	273, 427
BveI	ACCTGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	2 cut(s)	574, 695
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	5 cut(s)	97, 188, 287, 466, 509
CviQI	GTAC	2 cut(s)	574, 695
DdeI	CTNAG	3 cut(s)	138, 357, 557
DpnI	GATC	2 cut(s)	280, 470
DpnII	GATC	2 cut(s)	278, 468
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Ecl136II	GAGCTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	142, 162
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	5 cut(s)	100, 191, 290, 469, 512
FalI	AAGNNNNNCTT	4 cut(s)	301, 333, 417, 449
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	5 cut(s)	96, 187, 286, 465, 508
FauNDI	CATATG	1 cut(s)	568
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	67, 455, 458, 581
FokI	GGATG	3 cut(s)	11, 337, 574
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	4 cut(s)	67, 455, 458, 581
GluI	GCNGC	4 cut(s)	67, 455, 458, 581
HaeIII	GGCC	2 cut(s)	147, 501
Hin1II	CATG	5 cut(s)	100, 191, 290, 469, 512
HinfI	GANTC	2 cut(s)	350, 512
HphI	GGTGA	3 cut(s)	79, 151, 240
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	1 cut(s)	485
Hpy188III	TCNNGA	4 cut(s)	28, 296, 509, 643
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	2 cut(s)	144, 419
HpyCH4III	ACNGT	2 cut(s)	240, 422
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	138, 357, 557
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	100, 191, 290, 469, 512
KpnI	GGTACC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	278, 468
LguI	GCTCTTC	1 cut(s)	602
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	3 cut(s)	78, 444, 466
LweI	GCATC	3 cut(s)	289, 315, 552
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	4 cut(s)	80, 85, 311, 650
MalI	GATC	2 cut(s)	280, 470
MboI	GATC	2 cut(s)	278, 468
MboII	GAAGA	3 cut(s)	317, 404, 619
MhlI	GDGCHC	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	1 cut(s)	596
MluNI	TGGCCA	1 cut(s)	147
MnlI	CCTC	7 cut(s)	64, 204, 340, 491, 514, 595, 661
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	1 cut(s)	684
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	457
MspR9I	CCNGG	2 cut(s)	144, 164
MvaI	CCWGG	2 cut(s)	144, 164
MwoI	GCNNNNNNNGC	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	2 cut(s)	278, 468
NlaIII	CATG	5 cut(s)	100, 191, 290, 469, 512
NlaIV	GGNNCC	3 cut(s)	363, 502, 575
NmuCI	GTSAC	2 cut(s)	80, 85
NspI	RCATGY	1 cut(s)	191
PagI	TCATGA	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	259
PciI	ACATGT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	350, 512
PkrI	GCNGC	4 cut(s)	68, 456, 459, 582
PscI	ACATGT	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	142, 162
PspGI	CCWGG	2 cut(s)	142, 162
PspN4I	GGNNCC	3 cut(s)	363, 502, 575
PspPI	GGNCC	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	575, 696
RsaNI	GTAC	2 cut(s)	574, 695
SacI	GAGCTC	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	4 cut(s)	67, 455, 458, 581
Sau3AI	GATC	2 cut(s)	278, 468
Sau96I	GGNCC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	144, 164
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	3 cut(s)	289, 315, 552
SmlI	CTYRAG	3 cut(s)	18, 268, 329
SmoI	CTYRAG	3 cut(s)	18, 268, 329
Sse9I	AATT	1 cut(s)	596
SsiI	CCGC	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	142, 162
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	240, 422
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	4 cut(s)	56, 196, 600, 642
TasI	AATT	1 cut(s)	596
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	350, 512
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	2 cut(s)	280, 427
TseFI	GTSAC	2 cut(s)	80, 85
TseI	GCWGC	3 cut(s)	66, 454, 457
Tsp45I	GTSAC	2 cut(s)	80, 85
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	280, 427
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.