Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013028.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

45896 .. 46444

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013028.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atggcttccaagaacactcaagtcatcctgaagaacaagtccaagacaacaacctcaaaatcgagcagcagctcatcgggtcacgtcactcgaagcattgcaaaggttcagcctacaacatttgtggctttgccttctaagcctcgccaaccaatcatcatcctagaaagtttaggggcagggaagcatgtccctcgaagtaaagagagacaagctccaaatacaaaatcaaaggagcggtcgctctcacctgcctctgatgacaattcaagcaccggatcataccatggaagtcctgatcctgaagaaaataacacttttgggatgctgtcagacagtgcgtctcacctctcagcaatgcaagtcatgatgactggggcaaccacgctcgaaaagcaggtagctaatctgatgaaggcggttcaaaagctcactaataccgtaaaaaaaaaaaaagatatgcagattgctcaactttggagcaggctcgagaaacaaaatgatgaggattctgctaggattccatacaagaatgacaaagagaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

182

Amino Acids

19.91

Weight (kDa)

9.92

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	259, 388
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	2 cut(s)	238, 419
AclWI	GGATC	2 cut(s)	286, 293
AcuI	CTGAAG	2 cut(s)	50, 324
AgsI	TTSAA	2 cut(s)	270, 425
AhdI	GACNNNNNGTC	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	85
AluBI	AGCT	4 cut(s)	72, 215, 404, 430
AluI	AGCT	4 cut(s)	72, 215, 404, 430
Alw26I	GTCTC	2 cut(s)	202, 348
AlwI	GGATC	2 cut(s)	286, 293
Ama87I	CYCGRG	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	66, 69
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AsuHPI	GGTGA	2 cut(s)	240, 338
AvaI	CYCGRG	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	78, 81
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcoDI	GTCTC	2 cut(s)	202, 348
BfaI	CTAG	2 cut(s)	164, 516
BfuAI	ACCTGC	2 cut(s)	259, 388
BisI	GCNGC	2 cut(s)	67, 70
BlsI	GCNGC	2 cut(s)	68, 71
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	488
BmgBI	CACGTC	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	96, 363
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	3 cut(s)	24, 159, 330
BseMI	GCAATG	2 cut(s)	96, 363
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	78, 81
Bsh1285I	CGRYCG	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	202, 348
BsmBI	CGTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	278, 298
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	2 cut(s)	238, 419
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	366
BspMI	ACCTGC	2 cut(s)	259, 388
BspPI	GGATC	2 cut(s)	286, 293
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	96, 363
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	278, 298
BssT1I	CCWWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	338, 442
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	138, 352
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	24, 159, 330
BstKTI	GATC	2 cut(s)	281, 301
BstMAI	GTCTC	2 cut(s)	202, 348
BstMBI	GATC	2 cut(s)	278, 298
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 394
BstNSI	RCATGY	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	78, 81
BtgI	CCRYGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	24, 159, 330
BtsIMutI	CAGTG	1 cut(s)	343
BveI	ACCTGC	2 cut(s)	259, 388
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	1 cut(s)	366
CseI	GACGC	1 cut(s)	330
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	188, 287, 367
CviJI	RGCY	9 cut(s)	5, 72, 112, 128, 142, 215, 404, 430, 487
CviKI_1	RGCY	9 cut(s)	5, 72, 112, 128, 142, 215, 404, 430, 487
DdeI	CTNAG	2 cut(s)	138, 352
DpnI	GATC	2 cut(s)	280, 300
DpnII	GATC	2 cut(s)	278, 298
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	50, 324
Eco88I	CYCGRG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	348
FaeI	CATG	3 cut(s)	191, 290, 370
FaiI	YATR	6 cut(s)	189, 283, 288, 368, 461, 526
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	187, 286, 366
Fnu4HI	GCNGC	2 cut(s)	67, 70
FokI	GGATG	3 cut(s)	11, 146, 337
Fsp4HI	GCNGC	2 cut(s)	67, 70
FspBI	CTAG	2 cut(s)	164, 516
GluI	GCNGC	2 cut(s)	67, 70
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	191, 290, 370
HinfI	GANTC	2 cut(s)	509, 520
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	240, 338
Hpy188I	TCNGA	3 cut(s)	259, 334, 411
Hpy188III	TCNNGA	5 cut(s)	28, 296, 302, 367, 490
HpyAV	CCTTC	2 cut(s)	144, 409
HpyCH4III	ACNGT	2 cut(s)	338, 442
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	101, 361, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 394
HpyF3I	CTNAG	2 cut(s)	138, 352
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	191, 290, 370
Kzo9I	GATC	2 cut(s)	278, 298
LmnI	GCTCC	3 cut(s)	220, 235, 480
LpnPI	CCDG	9 cut(s)	41, 165, 264, 289, 309, 315, 360, 383, 469
Lsp1109I	GCAGC	2 cut(s)	78, 81
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	164, 516
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	80, 85
MalI	GATC	2 cut(s)	280, 300
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	2 cut(s)	278, 298
MboII	GAAGA	2 cut(s)	43, 317
MluCI	AATT	1 cut(s)	265
MnlI	CCTC	6 cut(s)	64, 153, 204, 265, 359, 499
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	139, 394
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	278, 298
NlaIII	CATG	3 cut(s)	191, 290, 370
NmuCI	GTSAC	2 cut(s)	80, 85
NspI	RCATGY	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	488
PagI	TCATGA	1 cut(s)	366
PaqCI	CACCTGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	509, 520
PkrI	GCNGC	2 cut(s)	68, 71
SatI	GCNGC	2 cut(s)	67, 70
Sau3AI	GATC	2 cut(s)	278, 298
SfaNI	GCATC	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	488
SlaI	CTCGAG	1 cut(s)	488
SmlI	CTYRAG	2 cut(s)	18, 488
SmoI	CTYRAG	2 cut(s)	18, 488
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	238, 419
SspMI	CTAG	2 cut(s)	164, 516
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	338, 442
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	62, 91, 196, 390, 489
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	509, 520
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	2 cut(s)	80, 85
TseI	GCWGC	2 cut(s)	66, 69
Tsp45I	GTSAC	2 cut(s)	80, 85
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	343
XceI	RCATGY	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	488
XspI	CTAG	2 cut(s)	164, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.