Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8363681.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 644

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8363681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 379 bp

gctcgagaaacaaaatgatgaggactctgctaggattccatacaaggatgacgaagataaacaagaagaaacttcaaaggcaaatgacaaggacagtgaaggcctacttggttctttgtccatccaacagttgcaagacatcatcaataacttgatcagagctcaatatggaagcccctctcgtgattctcacacatattccaagccatacacaaaaagagtagacagcctaaggatgccatatgggtaccaaccgcccaagtttcagcaattcgaggggaagggcaatccaaaacaacatattgctcatttcgtcgagacttgcaacaatactggaacggagggagatcatcttgttaagcagtttgtacgttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

125

Amino Acids

14.32

Weight (kDa)

5.79

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	249, 370
AgsI	TTSAA	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	91, 123
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	3
AoxI	GGCC	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	3
AxyI	CCTNAGG	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	164
BccI	CCATC	1 cut(s)	129
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	3
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	338
Bse21I	CCTNAGG	1 cut(s)	231
BseGI	GGATG	3 cut(s)	53, 121, 241
BseNI	ACTGG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	3
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	3
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	154, 347
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	154, 347
BssSI	CACGAG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	96, 130
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	3 cut(s)	53, 121, 241
BstKTI	GATC	2 cut(s)	157, 350
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	2 cut(s)	154, 347
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	53, 121, 241
BtsIMutI	CAGTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	248, 369
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	5 cut(s)	103, 162, 175, 206, 229
CviKI_1	RGCY	5 cut(s)	103, 162, 175, 206, 229
CviQI	GTAC	2 cut(s)	248, 369
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	156, 349
DpnII	GATC	2 cut(s)	154, 347
Ecl136II	GAGCTC	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	3
EcoICRI	GAGCTC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	164
FaeI	CATG	1 cut(s)	379
FaiI	YATR	8 cut(s)	41, 169, 197, 209, 242, 244, 301, 377
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	223
FokI	GGATG	3 cut(s)	60, 108, 248
FriOI	GRGCYC	1 cut(s)	164
FspBI	CTAG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	3 cut(s)	24, 35, 186
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	4 cut(s)	5, 183, 317, 376
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	93, 275
HpyCH4III	ACNGT	2 cut(s)	96, 130
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	134, 325
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	379
KpnI	GGTACC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	154, 347
LpnPI	CCDG	1 cut(s)	319
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	31
MaeII	ACGT	1 cut(s)	371
MalI	GATC	2 cut(s)	156, 349
MboI	GATC	2 cut(s)	154, 347
MboII	GAAGA	2 cut(s)	66, 78
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	4 cut(s)	14, 188, 269, 335
MseI	TTAA	1 cut(s)	358
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	2 cut(s)	154, 347
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	3
PagI	TCATGA	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	35, 186
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	249
RsaI	GTAC	2 cut(s)	249, 370
RsaNI	GTAC	2 cut(s)	248, 369
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	154, 347
SchI	GAGTC	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	2 cut(s)	164, 374
SfaNI	GCATC	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	3
SlaI	CTCGAG	1 cut(s)	3
SmlI	CTYRAG	1 cut(s)	3
SmoI	CTYRAG	1 cut(s)	3
Sse9I	AATT	1 cut(s)	270
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	31
SstI	GAGCTC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	96, 130
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	3 cut(s)	4, 274, 316
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	35, 186
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TscAI	CASTG	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	364
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	101
XhoI	CTCGAG	1 cut(s)	3
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.