Rmu_sc0029038.1_g000001

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029038.1
OG0007494
Physical Location & Seq
Forward (+)
160 .. 1933
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029038.1_g000001.1.cds

Sequence Viewer

Length: 1398 bp
atggcttccaagaacattcaagcccaagacaatgacctcgaaatcgagcagcagctcatctggggcaggaagcatgtccctcgaagtgaagagagacaagctccaactacaaaatcaagggagcggtcgttctcacctgcctttgatgacaattcaagcaccggatcataccttggaagtcctgatcctgaagaaaatgacacttctgggatgcagtcagacagagcgtctcacctcttagcaatgcaagtcatgatgactggggcaaccacgcttgaagagcaagtagctaatctgatggaggcggtccaaaagcttaccaataccgtcgaagaaaatgatatgcagattgctcaactttggagtaggcttgagaaacaaaatgatgaagattctgctaggattccgtacaaggatgacaaaggcaaacaagaagaaacttcaaagacaaatgacaaagacagtgaaagcctgcttggttctttgtccgtccagcagctgcaagacatgatcaacaactccattaaagctcaatatggaggcccctatgatgattctctcacatactccaagccatacaaaaaaagagtggatagcttgaggatgccatatgggtaccagccacccaagtttcagattttcaaggagaagggcaatccaaaacaacatattgctcattttgtcgagacttacaacaatgctggaatagagggagatcatctcgttaagcagtttgtacgttcattgaaggcaacgccttcgaatggtacactgatctggaacctgagtcaatcgacagttgggatcagatggagcggaatcaagccccgtacgtttgaagagctggctacgcgagcacacgacatggacaagattgacaaggcaccgaagaaatctgcaaaagaatcgatggccgtcaacattgccccaatcaaaatctctacacgagataaggaggttaagaaagcagagttaactcgcacctacgacagaacaaagcgtttgttgaaggaatggcaacaaaagacatatcccttcccagattctaacgtggcaagcatgttggaagatttacttgagaagaaggtgatagagctcccagaatgcaagcggcccgaggaaatgcatcgtgtcaaggacctgaaatactgcaagtaccaccagatcgtcagtcacccagtagagaaatgctttgttctgaaagatttaataatgaatctcaccaatcaaggaaggattaagctggatgtcgacgattttgctgaggtgaactgcactaccatcgtgtttaggtcattcgagcctgcctcattgccttcatttctaatgaaagcaccatatcagctctcgaggaagccatgcataaattcaaagttagagaaagtaaagccaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

465

Amino Acids

53.22

Weight (kDa)

8.31

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
Acc36I ACCTGC 1 cut(s) 145
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 2 cut(s) 615, 883
AccBSI CCGCTC 2 cut(s) 124, 816
AccI GTMKAC 1 cut(s) 1251
AccII CGCG 1 cut(s) 853
AciI CCGC 4 cut(s) 124, 305, 816, 1111
AclWI GGATC 3 cut(s) 172, 179, 812
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 1 cut(s) 1366
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 6 cut(s) 410, 617, 738, 769, 832, 1157
AfiI CCNNNNNNNGG 1 cut(s) 764
AgsI TTSAA 9 cut(s) 20, 156, 278, 444, 643, 748, 839, 1009, 1371
AhdI GACNNNNNGTC 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
Alw21I GWGCWC 2 cut(s) 859, 1098
Alw26I GTCTC 3 cut(s) 88, 234, 680
AlwI GGATC 3 cut(s) 172, 179, 812
AlwNI CAGNNNCTG 1 cut(s) 499
Ama87I CYCGRG 2 cut(s) 1115, 1348
AoxI GGCC 3 cut(s) 541, 912, 1112
ApeKI GCWGC 4 cut(s) 49, 52, 496, 499
ApoI RAATTY 1 cut(s) 1366
Asp718I GGTACC 1 cut(s) 615
AspS9I GGNCC 4 cut(s) 307, 542, 1113, 1138
AsuHPI GGTGA 6 cut(s) 126, 224, 1099, 1166, 1213, 1279
AsuII TTCGAA 1 cut(s) 761
AvaI CYCGRG 2 cut(s) 1115, 1348
AvaII GGWCC 2 cut(s) 307, 1138
BanI GGYRCC 2 cut(s) 615, 883
BanII GRGCYC 1 cut(s) 1098
BauI CACGAG 1 cut(s) 945
Bbv12I GWGCWC 2 cut(s) 859, 1098
BbvCI CCTCAGC 1 cut(s) 1263
BbvI GCAGC 4 cut(s) 61, 64, 486, 508
BccI CCATC 4 cut(s) 292, 804, 904, 1289
BceAI ACGGC 1 cut(s) 899
BclI TGATCA 1 cut(s) 510
BcoDI GTCTC 3 cut(s) 88, 234, 680
BfaI CTAG 2 cut(s) 399, 1396
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 5 cut(s) 50, 53, 497, 500, 1112
BlsI GCNGC 5 cut(s) 51, 54, 498, 501, 1113
Bme18I GGWCC 2 cut(s) 307, 1138
BmeRI GACNNNNNGTC 1 cut(s) 226
BmeT110I CYCGRG 2 cut(s) 1115, 1348
BmgT120I GGNCC 4 cut(s) 307, 542, 1113, 1138
BmiI GGNNCC 4 cut(s) 544, 617, 782, 885
BmrI ACTGGG 2 cut(s) 270, 1172
BmsI GCATC 3 cut(s) 201, 594, 1135
BmuI ACTGGG 2 cut(s) 270, 1172
BplI GAGNNNNNCTC 6 cut(s) 85, 117, 705, 737, 1292, 1324
Bpu10I CCTNAGC 1 cut(s) 1263
Bpu14I TTCGAA 1 cut(s) 761
BpuEI CTTGAG 3 cut(s) 392, 619, 1097
Bsa29I ATCGAT 1 cut(s) 908
BsaJI CCNNGG 2 cut(s) 172, 1116
BsaWI WCCGGW 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse1I ACTGG 2 cut(s) 265, 1178
Bse3DI GCAATG 3 cut(s) 249, 921, 1310
BseCI ATCGAT 1 cut(s) 908
BseDI CCNNGG 2 cut(s) 172, 1116
BseGI GGATG 4 cut(s) 216, 421, 609, 1252
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 3 cut(s) 249, 921, 1310
BseMII CTCAG 2 cut(s) 776, 1254
BseNI ACTGG 2 cut(s) 265, 1178
BseXI GCAGC 4 cut(s) 61, 64, 486, 508
BsgI GTGCAG 1 cut(s) 1258
Bsh1236I CGCG 1 cut(s) 853
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 543, 914, 1114
BshNI GGYRCC 2 cut(s) 615, 883
BshVI ATCGAT 1 cut(s) 908
BsiEI CGRYCG 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 859, 1098
BsiHKCI CYCGRG 2 cut(s) 1115, 1348
BsiSI CCGG 1 cut(s) 162
BsiWI CGTACG 1 cut(s) 830
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 3 cut(s) 88, 234, 680
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 1109
BsnI GGCC 3 cut(s) 543, 914, 1114
BsoBI CYCGRG 2 cut(s) 1115, 1348
Bsp119I TTCGAA 1 cut(s) 761
Bsp1286I GDGCHC 2 cut(s) 859, 1098
Bsp143I GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
BspACI CCGC 4 cut(s) 124, 305, 816, 1111
BspANI GGCC 3 cut(s) 543, 914, 1114
BspCNI CTCAG 2 cut(s) 777, 1255
BspDI ATCGAT 1 cut(s) 908
BspFNI CGCG 1 cut(s) 853
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 4 cut(s) 544, 617, 782, 885
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 3 cut(s) 172, 179, 812
BspQI GCTCTTC 2 cut(s) 273, 834
BspT104I TTCGAA 1 cut(s) 761
BspT107I GGYRCC 2 cut(s) 615, 883
BsrBI CCGCTC 2 cut(s) 124, 816
BsrDI GCAATG 3 cut(s) 249, 921, 1310
BsrI ACTGG 2 cut(s) 265, 1178
BssECI CCNNGG 2 cut(s) 172, 1116
BssMI GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
BssSI CACGAG 1 cut(s) 945
BssT1I CCWWGG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 945
Bst4CI ACNGT 3 cut(s) 328, 464, 799
Bst6I CTCTTC 3 cut(s) 84, 273, 834
BstBI TTCGAA 1 cut(s) 761
BstC8I GCNNGC 6 cut(s) 473, 846, 855, 1057, 1109, 1305
BstDEI CTNAG 3 cut(s) 238, 785, 1263
BstF5I GGATG 4 cut(s) 216, 421, 609, 1252
BstFNI CGCG 1 cut(s) 853
BstKTI GATC 7 cut(s) 167, 187, 513, 718, 777, 807, 1167
BstMAI GTCTC 3 cut(s) 88, 234, 680
BstMBI GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 3 cut(s) 280, 850, 854
BstNSI RCATGY 2 cut(s) 77, 1063
BstUI CGCG 1 cut(s) 853
BstV1I GCAGC 4 cut(s) 61, 64, 486, 508
Bsu15I ATCGAT 1 cut(s) 908
BsuRI GGCC 3 cut(s) 543, 914, 1114
BsuTUI ATCGAT 1 cut(s) 908
BtsCI GGATG 4 cut(s) 216, 421, 609, 1252
BtsIMutI CAGTG 2 cut(s) 469, 770
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 6 cut(s) 473, 846, 855, 1057, 1109, 1305
CaiI CAGNNNCTG 1 cut(s) 499
CciI TCATGA 1 cut(s) 252
Cfr13I GGNCC 4 cut(s) 307, 542, 1113, 1138
ClaI ATCGAT 1 cut(s) 908
CseI GACGC 1 cut(s) 216
Csp6I GTAC 6 cut(s) 409, 616, 737, 768, 831, 1156
CviAII CATG 6 cut(s) 74, 253, 508, 865, 1060, 1359
CviQI GTAC 6 cut(s) 409, 616, 737, 768, 831, 1156
DdeI CTNAG 3 cut(s) 238, 785, 1263
DpnI GATC 7 cut(s) 166, 186, 512, 717, 776, 806, 1166
DpnII GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
DriI GACNNNNNGTC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 3 cut(s) 84, 273, 834
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 3 cut(s) 84, 273, 834
Ecl136II GAGCTC 1 cut(s) 1096
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 1098
Eco47I GGWCC 2 cut(s) 307, 1138
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 2 cut(s) 1115, 1348
EcoICRI GAGCTC 1 cut(s) 1096
EcoO109I RGGNCCY 2 cut(s) 542, 1138
EcoT14I CCWWGG 1 cut(s) 172
EcoT22I ATGCAT 2 cut(s) 1128, 1364
EcoT38I GRGCYC 1 cut(s) 1098
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 6 cut(s) 77, 256, 511, 868, 1063, 1362
FalI AAGNNNNNCTT 2 cut(s) 1059, 1091
FaqI GGGAC 1 cut(s) 62
FatI CATG 6 cut(s) 73, 252, 507, 864, 1059, 1358
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 1 cut(s) 510
FblI GTMKAC 1 cut(s) 1251
Fnu4HI GCNGC 5 cut(s) 50, 53, 497, 500, 1112
FokI GGATG 4 cut(s) 223, 428, 616, 1259
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 5 cut(s) 50, 53, 497, 500, 1112
FspBI CTAG 2 cut(s) 399, 1396
GluI GCNGC 5 cut(s) 50, 53, 497, 500, 1112
HaeIII GGCC 3 cut(s) 543, 914, 1114
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 216
Hin1II CATG 6 cut(s) 77, 256, 511, 868, 1063, 1362
HincII GTYRAC 3 cut(s) 919, 975, 1252
HindII GTYRAC 3 cut(s) 919, 975, 1252
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 8 cut(s) 392, 403, 554, 787, 819, 905, 1043, 1216
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 1 cut(s) 162
HphI GGTGA 6 cut(s) 126, 224, 1099, 1166, 1213, 1279
Hpy166II GTNNAC 5 cut(s) 770, 919, 975, 1252, 1270
Hpy188I TCNGA 5 cut(s) 220, 297, 636, 809, 1200
Hpy188III TCNNGA 6 cut(s) 182, 188, 253, 685, 778, 1348
Hpy8I GTNNAC 5 cut(s) 770, 919, 975, 1252, 1270
Hpy99I CGWCG 2 cut(s) 332, 1256
HpyAV CCTTC 8 cut(s) 643, 742, 768, 1003, 1045, 1078, 1227, 1326
HpyCH4III ACNGT 3 cut(s) 328, 464, 799
HpyCH4IV ACGT 3 cut(s) 739, 833, 1050
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 850, 854
HpyF3I CTNAG 3 cut(s) 238, 785, 1263
HpySE526I ACGT 3 cut(s) 739, 833, 1050
Hsp92II CATG 6 cut(s) 77, 256, 511, 868, 1063, 1362
KpnI GGTACC 1 cut(s) 619
Ksp22I TGATCA 1 cut(s) 510
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
LguI GCTCTTC 2 cut(s) 273, 834
LmnI GCTCC 4 cut(s) 106, 121, 813, 1101
Lsp1109I GCAGC 4 cut(s) 61, 64, 486, 508
LweI GCATC 3 cut(s) 201, 594, 1135
MaeI CTAG 2 cut(s) 399, 1396
MaeII ACGT 3 cut(s) 739, 833, 1050
MaeIII GTNAC 1 cut(s) 1172
MalI GATC 7 cut(s) 166, 186, 512, 717, 776, 806, 1166
MbiI CCGCTC 2 cut(s) 124, 816
MboI GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
MhlI GDGCHC 2 cut(s) 859, 1098
MluCI AATT 2 cut(s) 151, 1366
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 2 cut(s) 128, 1044
Mph1103I ATGCAT 2 cut(s) 1128, 1364
MseI TTAA 6 cut(s) 525, 726, 960, 974, 1208, 1239
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 1109
MvnI CGCG 1 cut(s) 853
MwoI GCNNNNNNNGC 3 cut(s) 280, 850, 854
NdeI CATATG 1 cut(s) 610
NdeII GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
NlaIII CATG 6 cut(s) 77, 256, 511, 868, 1063, 1362
NlaIV GGNNCC 4 cut(s) 544, 617, 782, 885
NmuCI GTSAC 1 cut(s) 1172
NsiI ATGCAT 2 cut(s) 1128, 1364
NspI RCATGY 2 cut(s) 77, 1063
NspV TTCGAA 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 1348
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 145
PciSI GCTCTTC 2 cut(s) 273, 834
PctI GAATGC 1 cut(s) 1109
PfeI GAWTC 7 cut(s) 392, 403, 554, 819, 905, 1043, 1216
Pfl23II CGTACG 1 cut(s) 830
PkrI GCNGC 5 cut(s) 51, 54, 498, 501, 1113
PleI GAGTC 1 cut(s) 795
PpsI GAGTC 1 cut(s) 795
PpuMI RGGWCCY 1 cut(s) 1138
Psp124BI GAGCTC 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 1138
PspLI CGTACG 1 cut(s) 830
PspN4I GGNNCC 4 cut(s) 544, 617, 782, 885
PspPI GGNCC 4 cut(s) 307, 542, 1113, 1138
PspPPI RGGWCCY 1 cut(s) 1138
PstNI CAGNNNCTG 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 6 cut(s) 410, 617, 738, 769, 832, 1157
RsaNI GTAC 6 cut(s) 409, 616, 737, 768, 831, 1156
SacI GAGCTC 1 cut(s) 1098
SalI GTCGAC 1 cut(s) 1250
SapI GCTCTTC 2 cut(s) 273, 834
SaqAI TTAA 6 cut(s) 525, 726, 960, 974, 1208, 1239
SatI GCNGC 5 cut(s) 50, 53, 497, 500, 1112
Sau3AI GATC 7 cut(s) 164, 184, 510, 715, 774, 804, 1164
Sau96I GGNCC 4 cut(s) 307, 542, 1113, 1138
SchI GAGTC 1 cut(s) 796
SduI GDGCHC 2 cut(s) 859, 1098
SfaNI GCATC 3 cut(s) 201, 594, 1135
Sfr274I CTCGAG 1 cut(s) 1348
SfuI TTCGAA 1 cut(s) 761
SinI GGWCC 2 cut(s) 307, 1138
SlaI CTCGAG 1 cut(s) 1348
SmlI CTYRAG 4 cut(s) 371, 598, 1076, 1348
SmoI CTYRAG 4 cut(s) 371, 598, 1076, 1348
Sse9I AATT 2 cut(s) 151, 1366
SsiI CCGC 4 cut(s) 124, 305, 816, 1111
SspMI CTAG 2 cut(s) 399, 1396
SstI GAGCTC 1 cut(s) 1098
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 3 cut(s) 328, 464, 799
TaiI ACGT 3 cut(s) 742, 836, 1053
TasI AATT 2 cut(s) 151, 1366
TauI GCSGC 1 cut(s) 1114
TfiI GAWTC 7 cut(s) 392, 403, 554, 819, 905, 1043, 1216
Tru1I TTAA 6 cut(s) 525, 726, 960, 974, 1208, 1239
Tru9I TTAA 6 cut(s) 525, 726, 960, 974, 1208, 1239
TscAI CASTG 2 cut(s) 469, 777
TseFI GTSAC 1 cut(s) 1172
TseI GCWGC 4 cut(s) 49, 52, 496, 499
Tsp45I GTSAC 1 cut(s) 1172
TspDTI ATGAA 5 cut(s) 402, 732, 1229, 1308, 1343
TspGWI ACGGA 2 cut(s) 396, 478
TspRI CASTG 2 cut(s) 469, 777
VpaK11BI GGWCC 2 cut(s) 307, 1138
XapI RAATTY 1 cut(s) 1366
XceI RCATGY 2 cut(s) 77, 1063
XhoI CTCGAG 1 cut(s) 1348
XmiI GTMKAC 1 cut(s) 1251
XspI CTAG 2 cut(s) 399, 1396
Zsp2I ATGCAT 2 cut(s) 1128, 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.