Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003069.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

161302 .. 162163

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003069.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggcttccaagaacactcaagccatcccgaaaaacaaatccaagacaacgacctcgaaatcgagcagcaactcgtccggtcacgtcactcgaagcatggcaaaggttcagcccacagaatttgtggctttgccttctaagccatgccaaccaatcatcaccctagaaagtttaggggcggggaagcatgtccctcaaagtgaagagagacaagctccaaacacaaaaaccaagggaacgtcagatggtgcatctcacccctcagcaatgcaagtcatgatgacgggagcagccactctcgaggaacagataactaatttgatggaggcgattcaaaagctcacccataccgtcgaagaaaaggatatgcagattgctcaaatttggagtcggcttgagaaacaaaacgatgaggattctgctaaggttccatacaaggatgacaaagacaaacaagaagaaacttcaaagacaaatgacaaagacagtgaaagtttacttggttctttgtccgtccagcaactgcaagacatgatcaataactccatcagagctcagtatggaggcccctctcatgattctctcacatattccaagccatacacaaaaagagtggataggttgaggatgccatatgggtaccagccacctaagtttcaacaattcgagggcaagggcaatccaaaacaacatatgctcattttgtcgagacctgcaacaatgctagaacggagggagatcatcttgttaagcagtttgcacgttcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

256

Amino Acids

28.54

Weight (kDa)

9.11

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	721
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	639
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	119, 381
AfaI	GTAC	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	335, 468, 659
AjiI	CACGTC	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	3 cut(s)	215, 340, 554
AluI	AGCT	3 cut(s)	215, 340, 554
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	2 cut(s)	202, 703
AlwNI	CAGNNNCTG	1 cut(s)	523
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	2 cut(s)	66, 290
ApoI	RAATTY	2 cut(s)	119, 381
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
Asp718I	GGTACC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	3 cut(s)	151, 248, 334
AvaI	CYCGRG	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	556
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	78, 302
BccI	CCATC	4 cut(s)	32, 239, 316, 554
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	202, 703
BfaI	CTAG	2 cut(s)	164, 725
BfuAI	ACCTGC	1 cut(s)	721
BisI	GCNGC	2 cut(s)	67, 291
BlsI	GCNGC	2 cut(s)	68, 292
BmeT110I	CYCGRG	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	3 cut(s)	429, 568, 641
BmsI	GCATC	2 cut(s)	260, 618
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
Bpu10I	CCTNAGC	2 cut(s)	262, 423
BpuEI	CTTGAG	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	3 cut(s)	24, 445, 633
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	276, 569
BseXI	GCAGC	2 cut(s)	78, 302
BshFI	GGCC	1 cut(s)	567
BshNI	GGYRCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	202, 703
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	567
Bso31I	GGTCTC	1 cut(s)	703
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	2 cut(s)	534, 738
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	2 cut(s)	275, 568
BspHI	TCATGA	2 cut(s)	276, 574
BspLI	GGNNCC	3 cut(s)	429, 568, 641
BspMI	ACCTGC	1 cut(s)	721
BspT107I	GGYRCC	1 cut(s)	639
BspTNI	GGTCTC	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	534, 738
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	352, 488
Bst6I	CTCTTC	1 cut(s)	198
BstDEI	CTNAG	5 cut(s)	138, 262, 423, 555, 651
BstF5I	GGATG	3 cut(s)	24, 445, 633
BstKTI	GATC	2 cut(s)	537, 741
BstMAI	GTCTC	2 cut(s)	202, 703
BstMBI	GATC	2 cut(s)	534, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	78, 302
BsuRI	GGCC	1 cut(s)	567
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	24, 445, 633
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	721
CaiI	CAGNNNCTG	1 cut(s)	523
CciI	TCATGA	2 cut(s)	276, 574
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	640
CspCI	CAANNNNNGTGG	4 cut(s)	103, 138, 594, 629
CviAII	CATG	6 cut(s)	97, 144, 188, 277, 532, 575
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	5 cut(s)	138, 262, 423, 555, 651
DpnI	GATC	2 cut(s)	536, 740
DpnII	GATC	2 cut(s)	534, 738
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	703
Eco53kI	GAGCTC	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	566
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	6 cut(s)	100, 147, 191, 280, 535, 578
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	6 cut(s)	96, 143, 187, 276, 531, 574
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	2 cut(s)	634, 693
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	67, 291
FokI	GGATG	3 cut(s)	11, 452, 640
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	2 cut(s)	67, 291
FspBI	CTAG	2 cut(s)	164, 725
GluI	GCNGC	2 cut(s)	67, 291
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	6 cut(s)	100, 147, 191, 280, 535, 578
HinfI	GANTC	4 cut(s)	331, 388, 416, 578
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	3 cut(s)	151, 248, 334
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	2 cut(s)	244, 551
Hpy188III	TCNNGA	5 cut(s)	28, 277, 299, 575, 708
Hpy8I	GTNNAC	1 cut(s)	497
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	352, 488
HpyCH4IV	ACGT	3 cut(s)	84, 239, 762
HpyCH4V	TGCA	6 cut(s)	251, 271, 370, 526, 716, 760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	5 cut(s)	138, 262, 423, 555, 651
HpySE526I	ACGT	3 cut(s)	84, 239, 762
Hsp92II	CATG	6 cut(s)	100, 147, 191, 280, 535, 578
KpnI	GGTACC	1 cut(s)	643
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	534, 738
LmnI	GCTCC	2 cut(s)	220, 287
LpnPI	CCDG	4 cut(s)	91, 530, 656, 726
Lsp1109I	GCAGC	2 cut(s)	78, 302
LweI	GCATC	2 cut(s)	260, 618
MaeI	CTAG	2 cut(s)	164, 725
MaeII	ACGT	3 cut(s)	84, 239, 762
MaeIII	GTNAC	2 cut(s)	80, 85
MalI	GATC	2 cut(s)	536, 740
MboI	GATC	2 cut(s)	534, 738
MboII	GAAGA	3 cut(s)	215, 368, 470
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	4 cut(s)	119, 316, 381, 662
MlyI	GAGTC	1 cut(s)	397
MseI	TTAA	2 cut(s)	749, 769
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeI	CATATG	2 cut(s)	634, 693
NdeII	GATC	2 cut(s)	534, 738
NlaIII	CATG	6 cut(s)	100, 147, 191, 280, 535, 578
NlaIV	GGNNCC	3 cut(s)	429, 568, 641
NmuCI	GTSAC	2 cut(s)	80, 85
NspI	RCATGY	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	299
PagI	TCATGA	2 cut(s)	276, 574
PfeI	GAWTC	3 cut(s)	331, 416, 578
PkrI	GCNGC	2 cut(s)	68, 292
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	556
PspN4I	GGNNCC	3 cut(s)	429, 568, 641
PspPI	GGNCC	1 cut(s)	566
PstNI	CAGNNNCTG	1 cut(s)	523
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	749, 769
SatI	GCNGC	2 cut(s)	67, 291
Sau3AI	GATC	2 cut(s)	534, 738
Sau96I	GGNCC	1 cut(s)	566
SchI	GAGTC	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	260, 618
Sfr274I	CTCGAG	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	299
SmlI	CTYRAG	3 cut(s)	18, 299, 395
SmoI	CTYRAG	3 cut(s)	18, 299, 395
Sse9I	AATT	4 cut(s)	119, 316, 381, 662
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	164, 725
SstI	GAGCTC	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	352, 488
TaiI	ACGT	3 cut(s)	87, 242, 765
TaqI	TCGA	7 cut(s)	56, 62, 91, 300, 354, 666, 707
TasI	AATT	4 cut(s)	119, 316, 381, 662
TfiI	GAWTC	3 cut(s)	331, 416, 578
Tru1I	TTAA	2 cut(s)	749, 769
Tru9I	TTAA	2 cut(s)	749, 769
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	80, 85
TseI	GCWGC	2 cut(s)	66, 290
Tsp45I	GTSAC	2 cut(s)	80, 85
TspDTI	ATGAA	1 cut(s)	755
TspGWI	ACGGA	2 cut(s)	502, 745
TspRI	CASTG	1 cut(s)	493
XapI	RAATTY	2 cut(s)	119, 381
XceI	RCATGY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	299
XspI	CTAG	2 cut(s)	164, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.