Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004234.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

19723 .. 20580

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004234.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgacttccaagaacactcaagccatcccgaaaaacaaatccaagccaacgacctcgaaatcaagcagcaactcatctggtcacgtcacccgaagcatggcaaaggttcagccaacaacatttgtggctttgccttctaagcctggccaaccaatcatcaccctggaaagtttaggggtagggaaacatgtccctcgaagtggggaaagacaatctccaaatacaaagtcaagggaactgtcgttctcacctgcctttgatgacaactcaagcactggatcataccatggaagtcttgatgctgaagaaagtaacacttctgggatgcagttagactgtaagtctcacccctcagcaatgcaagtcatggtgactggagcagccacactcgaagagcagatagctaatctgatggaggattctgctaaggttccatacaagaatgacaaagagaaacaagaagaaacttcaaagacaaatgacaaagacagtgaaggtctacttggttctttgtccgtccagcagctgcaagacatgatcaataactccatcagagctcaatatggaggcccctctcatgattctctcacatattccaagccatacacaaaaagagtggatagccttaggatgccatatgggtaccagccgcccaagtttcagcaattcgagggaaaaagcaatccaaaacaacatattgctaattttgttgagacttgtaacaatgctggaacggagggagaacatcttgttaagcattctgtactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease_2 Retrotrans_gag

Protein Analysis

256

Amino Acids

27.89

Weight (kDa)

8.38

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	642
AccI	GTMKAC	1 cut(s)	499
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	644, 765
AfiI	CCNNNNNNNGG	2 cut(s)	97, 200
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	471
AhdI	GACNNNNNGTC	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	142, 162
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	404, 526, 557
AluI	AGCT	3 cut(s)	404, 526, 557
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	348, 707
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	2 cut(s)	145, 568
ApeKI	GCWGC	4 cut(s)	66, 380, 523, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp718I	GGTACC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	5 cut(s)	79, 151, 240, 338, 382
AxyI	CCTNAGG	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	78, 392, 513, 535
BccI	CCATC	3 cut(s)	32, 406, 557
BciT130I	CCWGG	2 cut(s)	144, 164
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	348, 707
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	5 cut(s)	67, 381, 524, 527, 650
BlsI	GCNGC	5 cut(s)	68, 382, 525, 528, 651
Bme1390I	CCNGG	2 cut(s)	144, 164
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	3 cut(s)	432, 571, 644
BmrFI	CCNGG	2 cut(s)	144, 164
BmsI	GCATC	3 cut(s)	289, 315, 621
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	2 cut(s)	352, 426
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	162, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 200
Bse1I	ACTGG	2 cut(s)	280, 379
Bse21I	CCTNAGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	144, 164
BseDI	CCNNGG	2 cut(s)	162, 286
BseGI	GGATG	3 cut(s)	24, 330, 636
BseLI	CCNNNNNNNGG	2 cut(s)	97, 200
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	2 cut(s)	280, 379
BseXI	GCAGC	4 cut(s)	78, 392, 513, 535
BshFI	GGCC	2 cut(s)	147, 570
BshNI	GGYRCC	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	97, 200
BsmAI	GTCTC	2 cut(s)	348, 707
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	2 cut(s)	147, 570
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	2 cut(s)	278, 537
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	2 cut(s)	147, 570
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	3 cut(s)	432, 571, 644
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	642
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	280, 379
BssECI	CCNNGG	2 cut(s)	162, 286
BssMI	GATC	2 cut(s)	278, 537
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	2 cut(s)	144, 164
Bst4CI	ACNGT	3 cut(s)	240, 338, 491
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	4 cut(s)	138, 352, 426, 626
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	24, 330, 636
BstKTI	GATC	2 cut(s)	281, 540
BstMAI	GTCTC	2 cut(s)	348, 707
BstMBI	GATC	2 cut(s)	278, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	144, 164
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	142, 162
BstV1I	GCAGC	4 cut(s)	78, 392, 513, 535
Bsu36I	CCTNAGG	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	147, 570
BtgI	CCRYGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	24, 330, 636
BtsIMutI	CAGTG	2 cut(s)	273, 496
BveI	ACCTGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	526
CciI	TCATGA	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	643, 764
CspCI	CAANNNNNGTGG	4 cut(s)	105, 140, 597, 632
CviAII	CATG	6 cut(s)	97, 188, 287, 367, 535, 578
CviQI	GTAC	2 cut(s)	643, 764
DdeI	CTNAG	4 cut(s)	138, 352, 426, 626
DpnI	GATC	2 cut(s)	280, 539
DpnII	GATC	2 cut(s)	278, 537
DriI	GACNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	387
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	626
EcoICRI	GAGCTC	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	142, 162
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	6 cut(s)	100, 191, 290, 370, 538, 581
FalI	AAGNNNNNCTT	4 cut(s)	301, 333, 486, 518
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	6 cut(s)	96, 187, 286, 366, 534, 577
FauNDI	CATATG	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	5 cut(s)	67, 381, 524, 527, 650
FokI	GGATG	3 cut(s)	11, 337, 643
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	5 cut(s)	67, 381, 524, 527, 650
GluI	GCNGC	5 cut(s)	67, 381, 524, 527, 650
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	147, 570
Hin1II	CATG	6 cut(s)	100, 191, 290, 370, 538, 581
HinfI	GANTC	2 cut(s)	419, 581
HphI	GGTGA	5 cut(s)	79, 151, 240, 338, 382
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	411, 554
Hpy188III	TCNNGA	3 cut(s)	28, 296, 578
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	2 cut(s)	144, 488
HpyCH4III	ACNGT	3 cut(s)	240, 338, 491
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	328, 361, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	4 cut(s)	138, 352, 426, 626
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	6 cut(s)	100, 191, 290, 370, 538, 581
KpnI	GGTACC	1 cut(s)	646
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	2 cut(s)	278, 537
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	377
Lsp1109I	GCAGC	4 cut(s)	78, 392, 513, 535
LweI	GCATC	3 cut(s)	289, 315, 621
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	5 cut(s)	80, 85, 311, 370, 719
MalI	GATC	2 cut(s)	280, 539
MboI	GATC	2 cut(s)	278, 537
MboII	GAAGA	3 cut(s)	317, 404, 473
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	2 cut(s)	665, 703
MluNI	TGGCCA	1 cut(s)	147
MnlI	CCTC	8 cut(s)	64, 204, 361, 409, 560, 583, 664, 730
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	526
MspR9I	CCNGG	2 cut(s)	144, 164
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	2 cut(s)	144, 164
MwoI	GCNNNNNNNGC	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	2 cut(s)	278, 537
NlaIII	CATG	6 cut(s)	100, 191, 290, 370, 538, 581
NlaIV	GGNNCC	3 cut(s)	432, 571, 644
NmuCI	GTSAC	3 cut(s)	80, 85, 370
NspI	RCATGY	1 cut(s)	191
PagI	TCATGA	1 cut(s)	577
PaqCI	CACCTGC	1 cut(s)	259
PciI	ACATGT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	2 cut(s)	419, 581
PkrI	GCNGC	5 cut(s)	68, 382, 525, 528, 651
PscI	ACATGT	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	142, 162
PspGI	CCWGG	2 cut(s)	142, 162
PspN4I	GGNNCC	3 cut(s)	432, 571, 644
PspPI	GGNCC	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	644, 765
RsaNI	GTAC	2 cut(s)	643, 764
SacI	GAGCTC	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	5 cut(s)	67, 381, 524, 527, 650
Sau3AI	GATC	2 cut(s)	278, 537
Sau96I	GGNCC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	144, 164
SduI	GDGCHC	1 cut(s)	559
SetI	ASST	9 cut(s)	56, 87, 108, 253, 406, 432, 499, 528, 559
SfaNI	GCATC	3 cut(s)	289, 315, 621
SmlI	CTYRAG	2 cut(s)	18, 268
SmoI	CTYRAG	2 cut(s)	18, 268
Sse9I	AATT	2 cut(s)	665, 703
SsiI	CCGC	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	142, 162
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	240, 338, 491
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	4 cut(s)	56, 196, 390, 669
TasI	AATT	2 cut(s)	665, 703
TatI	WGTACW	1 cut(s)	763
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	419, 581
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TscAI	CASTG	2 cut(s)	280, 496
TseFI	GTSAC	3 cut(s)	80, 85, 370
TseI	GCWGC	4 cut(s)	66, 380, 523, 526
Tsp45I	GTSAC	3 cut(s)	80, 85, 370
TspGWI	ACGGA	2 cut(s)	505, 749
TspRI	CASTG	2 cut(s)	280, 496
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.