Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003553.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

15947 .. 16594

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003553.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggcttgcaagaacattcaagtcatctcgaagaacaagtccaagacaacgaccacaaaatcgagcagcagctcatctggtcatgtcactcgaagcatggcaaaggttcagccaacaacatttgtggctttgtcttctaagcctcgccaaccaatcatcaccgtagaaagtttgggggcagggaagcatgtccctcgaagtgaagagaaacaagctccaaataaaaaatcaagggagcgatcgttctcacctgcctctgatgacaattcaagcaccggatcataccatggaagtcctgatcctgaagaaaataacacttctggggtgcggtcagatagcgcgtctttcctctcagcaatgcaagtcatgatgactgggacaaccacgatcgaagagcaggtagctaatctgatggaggcggttcaaaagctcaccaataccgtcgaagaaaaggatatgcagattgctcaactttggagtaggcttgagaaacaaaatgatgaggattctgctaggattctgtatacggatgacaaagacaaacaagaagaaacatcaaaggaaaatgacaaggacagtgaaggccaacttggttctttgtccgtccagcagctgcaagacatgatcaacaactccattagagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

215

Amino Acids

23.59

Weight (kDa)

5.73

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	259, 388
AccI	GTMKAC	1 cut(s)	524
AccII	CGCG	1 cut(s)	341
AciI	CCGC	2 cut(s)	328, 419
AclWI	GGATC	2 cut(s)	286, 293
AcuI	CTGAAG	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	20, 270, 425
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	6 cut(s)	72, 215, 404, 430, 613, 644
AluI	AGCT	6 cut(s)	72, 215, 404, 430, 613, 644
AlwI	GGATC	2 cut(s)	286, 293
AlwNI	CAGNNNCTG	1 cut(s)	613
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	4 cut(s)	66, 69, 610, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	3 cut(s)	151, 240, 424
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	78, 81, 600, 622
BccI	CCATC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BclI	TGATCA	1 cut(s)	624
BfaI	CTAG	1 cut(s)	513
BfuAI	ACCTGC	2 cut(s)	259, 388
BisI	GCNGC	4 cut(s)	67, 70, 611, 614
BlsI	GCNGC	4 cut(s)	68, 71, 612, 615
BmrI	ACTGGG	1 cut(s)	384
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	4 cut(s)	78, 81, 600, 622
Bsh1236I	CGCG	1 cut(s)	341
Bsh1285I	CGRYCG	2 cut(s)	242, 390
BshFI	GGCC	1 cut(s)	585
BsiEI	CGRYCG	2 cut(s)	242, 390
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	176, 391
BsmFI	GGGAC	2 cut(s)	176, 391
BsnI	GGCC	1 cut(s)	585
Bsp143I	GATC	5 cut(s)	239, 278, 298, 387, 624
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	2 cut(s)	328, 419
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	366
BspMI	ACCTGC	2 cut(s)	259, 388
BspPI	GGATC	2 cut(s)	286, 293
BspQI	GCTCTTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	5 cut(s)	239, 278, 298, 387, 624
BssNAI	GTATAC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	286
Bst1107I	GTATAC	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	163, 442, 578
Bst6I	CTCTTC	2 cut(s)	198, 387
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	138, 352, 645
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	5 cut(s)	242, 281, 301, 390, 627
BstMBI	GATC	5 cut(s)	239, 278, 298, 387, 624
BstMCI	CGRYCG	2 cut(s)	242, 390
BstNSI	RCATGY	1 cut(s)	191
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	4 cut(s)	78, 81, 600, 622
BstV2I	GAAGAC	1 cut(s)	126
BstZ17I	GTATAC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	585
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	583
BveI	ACCTGC	2 cut(s)	259, 388
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	613
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	341
CseI	GACGC	1 cut(s)	330
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	6 cut(s)	83, 97, 188, 287, 367, 622
DdeI	CTNAG	3 cut(s)	138, 352, 645
DpnI	GATC	5 cut(s)	241, 280, 300, 389, 626
DpnII	GATC	5 cut(s)	239, 278, 298, 387, 624
Eam1104I	CTCTTC	2 cut(s)	198, 387
EarI	CTCTTC	2 cut(s)	198, 387
Eco130I	CCWWGG	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	6 cut(s)	86, 100, 191, 290, 370, 625
FaiI	YATR	9 cut(s)	84, 98, 189, 283, 288, 368, 458, 525, 623
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	2 cut(s)	176, 391
FatI	CATG	6 cut(s)	82, 96, 187, 286, 366, 621
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	4 cut(s)	67, 70, 611, 614
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	67, 70, 611, 614
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	4 cut(s)	67, 70, 611, 614
HaeIII	GGCC	1 cut(s)	585
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	6 cut(s)	86, 100, 191, 290, 370, 625
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	506, 517
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	151, 240, 424
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	3 cut(s)	259, 334, 411
Hpy188III	TCNNGA	4 cut(s)	28, 296, 302, 367
Hpy8I	GTNNAC	1 cut(s)	525
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	3 cut(s)	163, 442, 578
HpyCH4V	TGCA	4 cut(s)	9, 361, 460, 616
HpyF3I	CTNAG	3 cut(s)	138, 352, 645
Hsp92II	CATG	6 cut(s)	86, 100, 191, 290, 370, 625
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	5 cut(s)	239, 278, 298, 387, 624
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	220, 235
Lsp1109I	GCAGC	4 cut(s)	78, 81, 600, 622
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	5 cut(s)	241, 280, 300, 389, 626
MboI	GATC	5 cut(s)	239, 278, 298, 387, 624
MboII	GAAGA	7 cut(s)	43, 126, 215, 317, 404, 458, 560
MluCI	AATT	1 cut(s)	265
MnlI	CCTC	6 cut(s)	153, 204, 265, 359, 409, 496
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	341
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	5 cut(s)	239, 278, 298, 387, 624
NlaIII	CATG	6 cut(s)	86, 100, 191, 290, 370, 625
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	191
PagI	TCATGA	1 cut(s)	366
PaqCI	CACCTGC	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	506, 517
PkrI	GCNGC	4 cut(s)	68, 71, 612, 615
Ple19I	CGATCG	2 cut(s)	242, 390
PstNI	CAGNNNCTG	1 cut(s)	613
PvuI	CGATCG	2 cut(s)	242, 390
PvuII	CAGCTG	1 cut(s)	613
SapI	GCTCTTC	1 cut(s)	387
SatI	GCNGC	4 cut(s)	67, 70, 611, 614
Sau3AI	GATC	5 cut(s)	239, 278, 298, 387, 624
SetI	ASST	9 cut(s)	74, 108, 217, 253, 402, 406, 432, 615, 646
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	328, 419
SspMI	CTAG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	163, 442, 578
TaqI	TCGA	6 cut(s)	29, 62, 91, 196, 390, 444
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	506, 517
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	4 cut(s)	66, 69, 610, 613
Tsp45I	GTSAC	1 cut(s)	85
TspGWI	ACGGA	2 cut(s)	542, 592
TspRI	CASTG	1 cut(s)	583
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.