Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041876.1

Orthogroup ID

OG0007494

Physical Location & Seq

Genomic Coordinates Forward (+)

160 .. 975

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggcttccaagaacattcaagtccaagacaatgacctcgaaatcgagcagcagctcatctggggcaggaagcatgtccctcgaagtgaagagagacaagctccaactacaaaatcaagggagcggtcgttctcacctgcctctgatgacaattcaagcaccggatcataccttggaagtcctgatcctgaagaaaatgacacttctgggatgcagtcagacagagcgtctcacctcttagcaatgcaagtcatgatgactggggcaaccacgcttgaagagcaagtagctaatctgatggaggcggtccaaaagcttaccaataccgtcgaagaaaatgatatgcagattgctcaactttggagtaggcttgagaaacaaaatgatgaagattctgctaggattccgtacaaggatgacaaaggcaaacaagaagaaacttcaaagacaaatgaaaaagacagtgaaagcctgcttggttctttgtccgtccagcagctgcaagacatgatcaacaactccattaaagctcaatatggaggcccctatggtgattctctcacatattccaagccatacacaaaaagagtggatagcttgaggatgccatatgggtaccagccacccaagtttcagcaattcaaggagaagggcaatccaaaacaacatattgctcattttgtcgagacttacaacaatgctggaatagagggagatcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

240

Amino Acids

27.13

Weight (kDa)

4.99

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007494)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22807 FvH4_4g22272
rosa_multiflora	Rmu_co8079694.1_g000001 Rmu_co8228495.1_g000001 Rmu_co8247513.1_g000001 Rmu_co8363681.1_g000001 Rmu_sc0000670.1_g000024 Rmu_sc0001107.1_g000006 Rmu_sc0001307.1_g000020 Rmu_sc0001438.1_g000045 Rmu_sc0001974.1_g000021 Rmu_sc0001981.1_g000010 Rmu_sc0002958.1_g000004 Rmu_sc0003069.1_g000031 Rmu_sc0003553.1_g000003 Rmu_sc0004234.1_g000005 Rmu_sc0004805.1_g000048 Rmu_sc0009186.1_g000007 Rmu_sc0009528.1_g000010 Rmu_sc0011242.1_g000005 Rmu_sc0013028.1_g000012 Rmu_sc0029038.1_g000001 Rmu_sc0041876.1_g000001 Rmu_ssc0000395.1_g000052
rosa_roxburghii	Rroxscaffold_3G00228150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
Acc65I	GGTACC	1 cut(s)	615
AccB1I	GGYRCC	1 cut(s)	615
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	2 cut(s)	124, 305
AclWI	GGATC	2 cut(s)	172, 179
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	410, 617
AgsI	TTSAA	5 cut(s)	20, 156, 278, 444, 643
AhdI	GACNNNNNGTC	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	7 cut(s)	55, 101, 290, 316, 499, 530, 597
AluI	AGCT	7 cut(s)	55, 101, 290, 316, 499, 530, 597
Alw26I	GTCTC	3 cut(s)	88, 234, 680
AlwI	GGATC	2 cut(s)	172, 179
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	4 cut(s)	49, 52, 496, 499
Asp718I	GGTACC	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	307, 542
AsuHPI	GGTGA	3 cut(s)	126, 224, 563
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	615
BbvI	GCAGC	4 cut(s)	61, 64, 486, 508
BccI	CCATC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	3 cut(s)	88, 234, 680
BfaI	CTAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	50, 53, 497, 500
BlsI	GCNGC	4 cut(s)	51, 54, 498, 501
Bme18I	GGWCC	1 cut(s)	307
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	307, 542
BmiI	GGNNCC	2 cut(s)	544, 617
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	201, 594
BmuI	ACTGGG	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpuEI	CTTGAG	2 cut(s)	392, 619
BsaJI	CCNNGG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	3 cut(s)	216, 421, 609
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	4 cut(s)	61, 64, 486, 508
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	615
BsiEI	CGRYCG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	3 cut(s)	88, 234, 680
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	164, 184, 510, 715
BspACI	CCGC	2 cut(s)	124, 305
BspANI	GGCC	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	544, 617
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	172, 179
BspQI	GCTCTTC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	615
BsrBI	CCGCTC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	4 cut(s)	164, 184, 510, 715
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	328, 464
Bst6I	CTCTTC	2 cut(s)	84, 273
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	216, 421, 609
BstKTI	GATC	4 cut(s)	167, 187, 513, 718
BstMAI	GTCTC	3 cut(s)	88, 234, 680
BstMBI	GATC	4 cut(s)	164, 184, 510, 715
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	61, 64, 486, 508
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	3 cut(s)	216, 421, 609
BtsIMutI	CAGTG	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	473
CaiI	CAGNNNCTG	1 cut(s)	499
CciI	TCATGA	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	307, 542
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	409, 616
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	3 cut(s)	74, 253, 508
CviQI	GTAC	2 cut(s)	409, 616
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	4 cut(s)	166, 186, 512, 717
DpnII	GATC	4 cut(s)	164, 184, 510, 715
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	84, 273
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	2 cut(s)	84, 273
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	3 cut(s)	77, 256, 511
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	73, 252, 507
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	4 cut(s)	50, 53, 497, 500
FokI	GGATG	3 cut(s)	223, 428, 616
Fsp4HI	GCNGC	4 cut(s)	50, 53, 497, 500
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	4 cut(s)	50, 53, 497, 500
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	77, 256, 511
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	3 cut(s)	392, 403, 554
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	126, 224, 563
Hpy188I	TCNGA	3 cut(s)	145, 220, 297
Hpy188III	TCNNGA	4 cut(s)	182, 188, 253, 685
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	2 cut(s)	328, 464
HpyCH4V	TGCA	4 cut(s)	214, 247, 346, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	77, 256, 511
KpnI	GGTACC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	164, 184, 510, 715
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	106, 121
Lsp1109I	GCAGC	4 cut(s)	61, 64, 486, 508
LweI	GCATC	2 cut(s)	201, 594
MaeI	CTAG	1 cut(s)	399
MalI	GATC	4 cut(s)	166, 186, 512, 717
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	4 cut(s)	164, 184, 510, 715
MboII	GAAGA	6 cut(s)	101, 203, 290, 344, 401, 446
MluCI	AATT	2 cut(s)	151, 638
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	47, 90, 151, 245, 295, 533, 594, 703
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	4 cut(s)	164, 184, 510, 715
NlaIII	CATG	3 cut(s)	77, 256, 511
NlaIV	GGNNCC	2 cut(s)	544, 617
NspI	RCATGY	1 cut(s)	77
PagI	TCATGA	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	392, 403, 554
PkrI	GCNGC	4 cut(s)	51, 54, 498, 501
PspN4I	GGNNCC	2 cut(s)	544, 617
PspPI	GGNCC	2 cut(s)	307, 542
PstNI	CAGNNNCTG	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	2 cut(s)	410, 617
RsaNI	GTAC	2 cut(s)	409, 616
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	4 cut(s)	50, 53, 497, 500
Sau3AI	GATC	4 cut(s)	164, 184, 510, 715
Sau96I	GGNCC	2 cut(s)	307, 542
SfaNI	GCATC	2 cut(s)	201, 594
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	371, 598
SmoI	CTYRAG	2 cut(s)	371, 598
Sse9I	AATT	2 cut(s)	151, 638
SsiI	CCGC	2 cut(s)	124, 305
SspMI	CTAG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	328, 464
TaqI	TCGA	5 cut(s)	39, 45, 82, 330, 684
TasI	AATT	2 cut(s)	151, 638
TfiI	GAWTC	3 cut(s)	392, 403, 554
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	4 cut(s)	49, 52, 496, 499
TspDTI	ATGAA	2 cut(s)	402, 468
TspGWI	ACGGA	2 cut(s)	396, 478
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	307
XceI	RCATGY	1 cut(s)	77
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.