FvH4_3g29620

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002803
Physical Location & Seq
Reverse (-)
22621004 .. 22625868
4865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29620.t2

Sequence Viewer

Length: 1143 bp
ATGGCAGAGTTGTTGGTCCATCACTCTCTAAGCAAATTCACTTTTGGTTCGATCACGAAGGCAAGAACAAAGAGCATTCGACACAGTTTGAGGCCTATTGAGTGTGTTGTAACTGAAGATAACCGACGAGTAGTGGTTAAGAATGGGAAGGATTCATTAGACATATGTCGAGTTGTGAATGGGATGTGGCAGACCAGCGGGGGCTGGGGTCAAATTGATAGAGACAATGCAGTTGATGCTATGCTTAAATATGCTGATGCTGGACTCACTACATTTGATATGGCAGATATATATGGACCAGCTGAGGATCTCTATGGCATCTTTATCAATCGTGTTCGTCAGGAGCGACCACCAGAATTATTGGAGAAGGTTAGAGGTCTCACAAAATGGGTGCCACCACCAGTCAAGATGACACGCAGTTTTGTGAGGGACAGTATAAATGTTTCAAGAAAGAGAATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGACTATGCAAATTCGGGTTACCTTGATGCACTTAAACACCTTACAGATTTGAAAGAAGAAGGTAAAATAAAGACTGTAGCCTTGACAAATTTTGATACTGAGAGACTACAGATAATCCTAGAAAATGAGATTCCTGTCGTAAGCAACCAGGTCCAACATTCAATTGTTGACATGCGTCCTCAACAGCAAATGGCAGACCTTTGTAAGCTTACAGGAGTCAAACTTATAACGTATGGGACAGTTATGGGTGGTCTGTTATCTGAAAAGTTCCTTGACACGAACTTGTCCATTCCGTTTGCTGGGCCTCCGTTAAACACTCCCTCCCTCCAAAAGTACAAACAGATAGTTGATGCCTGGGGAGGATGGAGTCTTTTTCAAACTCTTCTTCAGACACTTAAAAGAATTGCTTCTAAACATGGTGTAACAATCCCCAATGTTGCTGTGAAATACATCCTAGATCAGCGAGGTGTGGCAGGATCGATGATAGGTGTAAGACTTGGGTTGTCAGAACATATCCAAGACTCTAATGCTGTGTTTTCTCTTGCTCTTGATGAGGATGATATAAGCAGCATTGAAGAAGTCACAAAGAAAGGGAAGAATCTCCTTCGAGTTATTGGTGACTGCGGAGATGAATATAGGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

381

Amino Acids

42.72

Weight (kDa)

8.21

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 65 - 240 9e-45 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 391
AciI CCGC 2 cut(s) 198, 1122
AclWI GGATC 2 cut(s) 315, 982
AcsI RAATTY 3 cut(s) 35, 508, 586
AcuI CTGAAG 3 cut(s) 135, 467, 869
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 1 cut(s) 797
AgsI TTSAA 5 cut(s) 447, 550, 660, 875, 1073
AjnI CCWGG 2 cut(s) 645, 851
AluBI AGCT 2 cut(s) 302, 706
AluI AGCT 2 cut(s) 302, 706
Alw26I GTCTC 3 cut(s) 216, 383, 595
AlwI GGATC 2 cut(s) 315, 982
AoxI GGCC 2 cut(s) 92, 800
ApeKI GCWGC 1 cut(s) 1065
ApoI RAATTY 3 cut(s) 35, 508, 586
Asp700I GAANNNNTTC 1 cut(s) 904
AspLEI GCGC 1 cut(s) 1140
AspS9I GGNCC 4 cut(s) 16, 296, 649, 800
AsuHPI GGTGA 1 cut(s) 1127
AvaII GGWCC 3 cut(s) 16, 296, 649
BanI GGYRCC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 1077
BccI CCATC 2 cut(s) 27, 855
BciT130I CCWGG 2 cut(s) 647, 853
BcoDI GTCTC 3 cut(s) 216, 383, 595
BfaI CTAG 2 cut(s) 617, 953
BfmI CTRYAG 2 cut(s) 573, 605
BfoI RGCGCY 1 cut(s) 1141
BisI GCNGC 1 cut(s) 1066
BlsI GCNGC 1 cut(s) 1067
Bme1390I CCNGG 2 cut(s) 647, 853
Bme18I GGWCC 3 cut(s) 16, 296, 649
BmgT120I GGNCC 4 cut(s) 16, 296, 649, 800
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 2 cut(s) 647, 853
BmsI GCATC 5 cut(s) 226, 247, 327, 514, 838
BoxI GACNNNNGTC 2 cut(s) 165, 672
Bpu10I CCTNAGC 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 977
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 471, 852
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 1 cut(s) 797
Bse1I ACTGG 1 cut(s) 401
BseBI CCWGG 2 cut(s) 647, 853
BseCI ATCGAT 1 cut(s) 977
BseDI CCNNGG 2 cut(s) 471, 852
BseGI GGATG 5 cut(s) 189, 466, 866, 948, 1060
BseLI CCNNNNNNNGG 1 cut(s) 797
BseMII CTCAG 2 cut(s) 294, 588
BseNI ACTGG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 1077
BseYI CCCAGC 2 cut(s) 204, 797
BshFI GGCC 2 cut(s) 94, 802
BshNI GGYRCC 1 cut(s) 391
BshVI ATCGAT 1 cut(s) 977
BslFI GGGAC 3 cut(s) 443, 512, 748
BslI CCNNNNNNNGG 1 cut(s) 797
BsmAI GTCTC 3 cut(s) 216, 383, 595
BsmFI GGGAC 3 cut(s) 443, 512, 748
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 2 cut(s) 94, 802
Bso31I GGTCTC 1 cut(s) 383
Bsp143I GATC 4 cut(s) 51, 307, 955, 974
BspACI CCGC 2 cut(s) 198, 1122
BspANI GGCC 2 cut(s) 94, 802
BspCNI CTCAG 2 cut(s) 295, 589
BspDI ATCGAT 1 cut(s) 977
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 2 cut(s) 315, 982
BspT107I GGYRCC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 471, 852
BssMI GATC 4 cut(s) 51, 307, 955, 974
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 2 cut(s) 647, 853
Bst4CI ACNGT 4 cut(s) 86, 434, 574, 739
Bst6I CTCTTC 1 cut(s) 885
BstAPI GCANNNNNTGC 1 cut(s) 236
BstDEI CTNAG 3 cut(s) 29, 303, 597
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 5 cut(s) 189, 466, 866, 948, 1060
BstH2I RGCGCY 1 cut(s) 1141
BstHHI GCGC 1 cut(s) 1140
BstKTI GATC 4 cut(s) 54, 310, 958, 977
BstMAI GTCTC 3 cut(s) 216, 383, 595
BstMBI GATC 4 cut(s) 51, 307, 955, 974
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 2 cut(s) 647, 853
BstNSI RCATGY 2 cut(s) 481, 673
BstPAI GACNNNNGTC 2 cut(s) 165, 672
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 645, 851
BstSFI CTRYAG 2 cut(s) 573, 605
BstV1I GCAGC 1 cut(s) 1077
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 977
BsuRI GGCC 2 cut(s) 94, 802
BsuTUI ATCGAT 1 cut(s) 977
BtsCI GGATG 5 cut(s) 189, 466, 866, 948, 1060
CfoI GCGC 1 cut(s) 1140
Cfr13I GGNCC 4 cut(s) 16, 296, 649, 800
ClaI ATCGAT 1 cut(s) 977
CseI GACGC 1 cut(s) 662
CsiI ACCWGGT 1 cut(s) 645
Csp6I GTAC 1 cut(s) 832
CviAII CATG 3 cut(s) 478, 670, 914
CviJI RGCY 7 cut(s) 94, 204, 302, 467, 578, 706, 802
CviKI_1 RGCY 7 cut(s) 94, 204, 302, 467, 578, 706, 802
CviQI GTAC 1 cut(s) 832
DdeI CTNAG 3 cut(s) 29, 303, 597
DpnI GATC 4 cut(s) 53, 309, 957, 976
DpnII GATC 4 cut(s) 51, 307, 955, 974
Eam1104I CTCTTC 1 cut(s) 885
EarI CTCTTC 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 3 cut(s) 16, 296, 649
Eco57I CTGAAG 3 cut(s) 135, 467, 869
Eco91I GGTNACC 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 645, 851
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 3 cut(s) 481, 673, 917
FalI AAGNNNNNCTT 2 cut(s) 889, 921
FaqI GGGAC 3 cut(s) 443, 512, 748
FatI CATG 3 cut(s) 477, 669, 913
FauI CCCGC 1 cut(s) 191
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 1066
FokI GGATG 5 cut(s) 196, 473, 873, 935, 1067
Fsp4HI GCNGC 1 cut(s) 1066
FspBI CTAG 2 cut(s) 617, 953
GlaI GCGC 1 cut(s) 1139
GluI GCNGC 1 cut(s) 1066
GsaI CCCAGC 2 cut(s) 208, 801
HaeII RGCGCY 1 cut(s) 1141
HaeIII GGCC 2 cut(s) 94, 802
HgaI GACGC 1 cut(s) 662
HhaI GCGC 1 cut(s) 1140
Hin1II CATG 3 cut(s) 481, 673, 917
Hin6I GCGC 1 cut(s) 1138
HinP1I GCGC 1 cut(s) 1138
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 7 cut(s) 152, 264, 628, 714, 865, 1019, 1096
HphI GGTGA 1 cut(s) 1127
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 3 cut(s) 760, 888, 1006
Hpy188III TCNNGA 5 cut(s) 55, 341, 406, 447, 1046
Hpy8I GTNNAC 1 cut(s) 667
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 5 cut(s) 52, 142, 361, 551, 1112
HpyCH4III ACNGT 4 cut(s) 86, 434, 574, 739
HpyCH4IV ACGT 1 cut(s) 728
HpyCH4V TGCA 3 cut(s) 230, 506, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 3 cut(s) 29, 303, 597
HpySE526I ACGT 1 cut(s) 728
Hsp92II CATG 3 cut(s) 481, 673, 917
HspAI GCGC 1 cut(s) 1138
Kzo9I GATC 4 cut(s) 51, 307, 955, 974
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 1 cut(s) 1077
LweI GCATC 5 cut(s) 226, 247, 327, 514, 838
MabI ACCWGGT 1 cut(s) 645
MaeI CTAG 2 cut(s) 617, 953
MaeII ACGT 1 cut(s) 728
MaeIII GTNAC 5 cut(s) 109, 515, 919, 1078, 1115
MalI GATC 4 cut(s) 53, 309, 957, 976
MboI GATC 4 cut(s) 51, 307, 955, 974
MboII GAAGA 6 cut(s) 128, 566, 872, 875, 1085, 1105
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 307
MluCI AATT 7 cut(s) 35, 213, 356, 508, 586, 660, 900
MlyI GAGTC 4 cut(s) 258, 723, 874, 1013
MmeI TCCRAC 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 904
MseI TTAA 5 cut(s) 138, 246, 531, 809, 894
MspA1I CMGCKG 2 cut(s) 198, 302
MspR9I CCNGG 2 cut(s) 647, 853
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 2 cut(s) 647, 853
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeI CATATG 1 cut(s) 164
NdeII GATC 4 cut(s) 51, 307, 955, 974
NlaIII CATG 3 cut(s) 481, 673, 917
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 2 cut(s) 1078, 1115
NspI RCATGY 2 cut(s) 481, 673
PceI AGGCCT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PctI GAATGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 904
PfeI GAWTC 3 cut(s) 152, 628, 1096
PkrI GCNGC 1 cut(s) 1067
PleI GAGTC 4 cut(s) 258, 722, 873, 1013
PpsI GAGTC 4 cut(s) 258, 722, 873, 1013
PshAI GACNNNNGTC 2 cut(s) 165, 672
PsiI TTATAA 1 cut(s) 725
Psp6I CCWGG 2 cut(s) 645, 851
PspEI GGTNACC 1 cut(s) 515
PspFI CCCAGC 2 cut(s) 204, 797
PspGI CCWGG 2 cut(s) 645, 851
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 4 cut(s) 16, 296, 649, 800
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
SaqAI TTAA 5 cut(s) 138, 246, 531, 809, 894
SatI GCNGC 1 cut(s) 1066
Sau3AI GATC 4 cut(s) 51, 307, 955, 974
Sau96I GGNCC 4 cut(s) 16, 296, 649, 800
SchI GAGTC 4 cut(s) 258, 723, 874, 1013
ScrFI CCNGG 2 cut(s) 647, 853
SexAI ACCWGGT 1 cut(s) 645
SfaNI GCATC 5 cut(s) 226, 247, 327, 514, 838
SfcI CTRYAG 2 cut(s) 573, 605
SinI GGWCC 3 cut(s) 16, 296, 649
Sse9I AATT 7 cut(s) 35, 213, 356, 508, 586, 660, 900
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 2 cut(s) 198, 1122
SspMI CTAG 2 cut(s) 617, 953
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 2 cut(s) 645, 851
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 4 cut(s) 86, 434, 574, 739
TaiI ACGT 1 cut(s) 731
TaqI TCGA 5 cut(s) 50, 79, 169, 977, 1105
TasI AATT 7 cut(s) 35, 213, 356, 508, 586, 660, 900
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 3 cut(s) 152, 628, 1096
Tru1I TTAA 5 cut(s) 138, 246, 531, 809, 894
Tru9I TTAA 5 cut(s) 138, 246, 531, 809, 894
TseFI GTSAC 2 cut(s) 1078, 1115
TseI GCWGC 1 cut(s) 1065
Tsp45I GTSAC 2 cut(s) 1078, 1115
TspDTI ATGAA 3 cut(s) 144, 479, 1143
TspGWI ACGGA 2 cut(s) 780, 795
VpaK11BI GGWCC 3 cut(s) 16, 296, 649
XapI RAATTY 3 cut(s) 35, 508, 586
XceI RCATGY 2 cut(s) 481, 673
XmnI GAANNNNTTC 1 cut(s) 904
XspI CTAG 2 cut(s) 617, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.