Rw5G033810

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002803
Physical Location & Seq
Reverse (-)
57618155 .. 57621571
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033810.1

Sequence Viewer

Length: 960 bp
ATGTGGCAAACCAGCGGTGCCTGGGGCCGCATCGACCTAGACGACACCGTTGAGGCCATGCTCCGCTACGCCGACACCGGCCTCTCCACCTTTGACATGACCGACCACTATGGACCGGCCGAAGATCTATATGGCATCTTTATCAATCGTGTTCGTAAGGAGCGACCACCAGAATTCTTGGAGAAGGTTAGAGGTCTCACAAAATGGGTGCCGCCACCAGTTAAGATGACAAGCAGTTTTGTGAGGGACAGTATAAATGTTTCAAGAAAGAGAATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACGCAAATTCGGGTTACCTTGATGCACTTAAACACCTTACAGATTTGAAAGACGAAGGTAAAATAAAGACCGTAGCTTTGACAAATTTTGATACCGAGAGATTACAGATAATCCTAGAAAATGAGATTCCTGTTGTAAGCAATCAGGTCCAACATTCGATTGTTGACATGCGTCCTCAACAGCAAATGACAGAGCTTTGTGAGCTTACCGGAGTCAAACTTATAACGTATGGGACAGTAATGGGTGGTCTATTATCTGAAAAGTTCCTTGACACCAACTTGTCCATTCCGTTTGCTGGGCCTCCGTTAAACACTCCCTCCCTCCAAAAGTACATACGGATGGTTGATGCCTGGGGAGGATGGAATCTTTTTCAAACTCTTCTTCAGGCACTCAAAAGAATTGCTTCTAAACATGGTATCACAATCCCCAATGTTGCTGTGAAATACATACTAGATCAGCGGGGTGTGGCAGGATCGATGATAGGTGTTAGACTCGGGTTGTCAGAACATATCCAAGACTCTAATGCTGTGTTTTCACTTGCTCTTGATGAGGATGATATAAGCAGCATAGAAGAAGTCACAAAGAAAGGGAAGAATCTCCTTCAAGTTATTGGTGACTGCGGAGATGAATATAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

319

Amino Acids

36.02

Weight (kDa)

5.47

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 299 2.3e-66 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccB1I GGYRCC 2 cut(s) 17, 208
AciI CCGC 6 cut(s) 15, 28, 64, 212, 778, 939
AclWI GGATC 1 cut(s) 799
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 3 cut(s) 173, 325, 403
AcuI CTGAAG 2 cut(s) 284, 686
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 1 cut(s) 614
AgsI TTSAA 4 cut(s) 264, 367, 692, 923
AjnI CCWGG 2 cut(s) 20, 668
AluBI AGCT 3 cut(s) 395, 514, 523
AluI AGCT 3 cut(s) 395, 514, 523
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 799
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 5 cut(s) 25, 54, 79, 117, 617
ApeKI GCWGC 1 cut(s) 882
ApoI RAATTY 3 cut(s) 173, 325, 403
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
Asp700I GAANNNNTTC 1 cut(s) 721
AspS9I GGNCC 4 cut(s) 25, 113, 466, 617
AsuHPI GGTGA 1 cut(s) 944
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 2 cut(s) 113, 466
BanI GGYRCC 2 cut(s) 17, 208
BbvI GCAGC 1 cut(s) 894
BccI CCATC 2 cut(s) 652, 672
BciT130I CCWGG 2 cut(s) 22, 670
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 3 cut(s) 38, 434, 770
BglII AGATCT 1 cut(s) 124
BisI GCNGC 3 cut(s) 28, 212, 883
BlsI GCNGC 3 cut(s) 29, 213, 884
Bme1390I CCNGG 2 cut(s) 22, 670
Bme18I GGWCC 2 cut(s) 113, 466
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 4 cut(s) 25, 113, 466, 617
BmiI GGNNCC 3 cut(s) 19, 26, 210
BmrFI CCNGG 2 cut(s) 22, 670
BmsI GCATC 4 cut(s) 39, 144, 331, 655
BoxI GACNNNNGTC 1 cut(s) 489
Bsa29I ATCGAT 1 cut(s) 794
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 21, 288, 669
BsaWI WCCGGW 1 cut(s) 527
BsaXI ACNNNNNCTCC 2 cut(s) 620, 650
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse118I RCCGGY 2 cut(s) 77, 115
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 2 cut(s) 22, 670
BseCI ATCGAT 1 cut(s) 794
BseDI CCNNGG 3 cut(s) 21, 288, 669
BseGI GGATG 4 cut(s) 283, 663, 683, 877
BseLI CCNNNNNNNGG 1 cut(s) 614
BseNI ACTGG 1 cut(s) 218
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 894
BseYI CCCAGC 1 cut(s) 614
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 5 cut(s) 27, 56, 81, 119, 619
BshNI GGYRCC 2 cut(s) 17, 208
BshVI ATCGAT 1 cut(s) 794
BsiEI CGRYCG 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 3 cut(s) 78, 116, 528
BslFI GGGAC 2 cut(s) 260, 565
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 2 cut(s) 260, 565
BsnI GGCC 5 cut(s) 27, 56, 81, 119, 619
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 812
Bsp143I GATC 3 cut(s) 124, 772, 791
BspACI CCGC 6 cut(s) 15, 28, 64, 212, 778, 939
BspANI GGCC 5 cut(s) 27, 56, 81, 119, 619
BspDI ATCGAT 1 cut(s) 794
BspLI GGNNCC 3 cut(s) 19, 26, 210
BspPI GGATC 1 cut(s) 799
BspT107I GGYRCC 2 cut(s) 17, 208
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 2 cut(s) 77, 115
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 2 cut(s) 77, 115
BssECI CCNNGG 3 cut(s) 21, 288, 669
BssMI GATC 3 cut(s) 124, 772, 791
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 22, 670
Bst4CI ACNGT 4 cut(s) 49, 251, 391, 556
Bst6I CTCTTC 1 cut(s) 702
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 4 cut(s) 283, 663, 683, 877
BstKTI GATC 3 cut(s) 127, 775, 794
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 3 cut(s) 124, 772, 791
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 2 cut(s) 22, 670
BstNSI RCATGY 2 cut(s) 298, 490
BstPAI GACNNNNGTC 1 cut(s) 489
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 20, 668
BstV1I GCAGC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 794
BsuRI GGCC 5 cut(s) 27, 56, 81, 119, 619
BsuTUI ATCGAT 1 cut(s) 794
BtsCI GGATG 4 cut(s) 283, 663, 683, 877
Cfr10I RCCGGY 2 cut(s) 77, 115
Cfr13I GGNCC 4 cut(s) 25, 113, 466, 617
ClaI ATCGAT 1 cut(s) 794
CseI GACGC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 649
CviAII CATG 5 cut(s) 58, 97, 295, 487, 731
CviJI RGCY 9 cut(s) 27, 56, 81, 119, 284, 395, 514, 523, 619
CviKI_1 RGCY 9 cut(s) 27, 56, 81, 119, 284, 395, 514, 523, 619
CviQI GTAC 1 cut(s) 649
DpnI GATC 3 cut(s) 126, 774, 793
DpnII GATC 3 cut(s) 124, 772, 791
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 113, 466
Eco52I CGGCCG 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 284, 686
Eco88I CYCGRG 1 cut(s) 812
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 20, 668
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 5 cut(s) 61, 100, 298, 490, 734
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 2 cut(s) 260, 565
FatI CATG 5 cut(s) 57, 96, 294, 486, 730
FauI CCCGC 1 cut(s) 771
Fnu4HI GCNGC 3 cut(s) 28, 212, 883
FokI GGATG 4 cut(s) 290, 670, 690, 884
Fsp4HI GCNGC 3 cut(s) 28, 212, 883
FspBI CTAG 3 cut(s) 38, 434, 770
GluI GCNGC 3 cut(s) 28, 212, 883
GsaI CCCAGC 1 cut(s) 618
HaeIII GGCC 5 cut(s) 27, 56, 81, 119, 619
HapII CCGG 3 cut(s) 78, 116, 528
HgaI GACGC 1 cut(s) 479
Hin1II CATG 5 cut(s) 61, 100, 298, 490, 734
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 6 cut(s) 445, 531, 682, 810, 836, 913
HpaII CCGG 3 cut(s) 78, 116, 528
HphI GGTGA 1 cut(s) 944
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 2 cut(s) 577, 823
Hpy188III TCNNGA 2 cut(s) 264, 863
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 3 cut(s) 178, 368, 929
HpyCH4III ACNGT 4 cut(s) 49, 251, 391, 556
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 5 cut(s) 61, 100, 298, 490, 734
Kzo9I GATC 3 cut(s) 124, 772, 791
LmnI GCTCC 2 cut(s) 66, 160
Lsp1109I GCAGC 1 cut(s) 894
LweI GCATC 4 cut(s) 39, 144, 331, 655
MaeI CTAG 3 cut(s) 38, 434, 770
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 3 cut(s) 332, 895, 932
MalI GATC 3 cut(s) 126, 774, 793
MboI GATC 3 cut(s) 124, 772, 791
MboII GAAGA 5 cut(s) 134, 689, 692, 902, 922
MflI RGATCY 1 cut(s) 124
MluCI AATT 4 cut(s) 173, 325, 403, 717
MlyI GAGTC 3 cut(s) 540, 804, 830
MmeI TCCRAC 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 721
MseI TTAA 3 cut(s) 222, 348, 626
MslI CAYNNNNRTG 1 cut(s) 656
MspA1I CMGCKG 2 cut(s) 15, 778
MspI CCGG 3 cut(s) 78, 116, 528
MspR9I CCNGG 2 cut(s) 22, 670
MvaI CCWGG 2 cut(s) 22, 670
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 3 cut(s) 124, 772, 791
NlaIII CATG 5 cut(s) 61, 100, 298, 490, 734
NlaIV GGNNCC 3 cut(s) 19, 26, 210
NmuCI GTSAC 2 cut(s) 895, 932
NspI RCATGY 2 cut(s) 298, 490
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 160
PdmI GAANNNNTTC 1 cut(s) 721
PfeI GAWTC 3 cut(s) 445, 682, 913
PkrI GCNGC 3 cut(s) 29, 213, 884
PleI GAGTC 3 cut(s) 539, 804, 830
PpsI GAGTC 3 cut(s) 539, 804, 830
PshAI GACNNNNGTC 1 cut(s) 489
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 20, 668
PspEI GGTNACC 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 614
PspGI CCWGG 2 cut(s) 20, 668
PspN4I GGNNCC 3 cut(s) 19, 26, 210
PspPI GGNCC 4 cut(s) 25, 113, 466, 617
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
RseI CAYNNNNRTG 1 cut(s) 656
SaqAI TTAA 3 cut(s) 222, 348, 626
SatI GCNGC 3 cut(s) 28, 212, 883
Sau3AI GATC 3 cut(s) 124, 772, 791
Sau96I GGNCC 4 cut(s) 25, 113, 466, 617
SchI GAGTC 3 cut(s) 540, 804, 830
ScrFI CCNGG 2 cut(s) 22, 670
SfaNI GCATC 4 cut(s) 39, 144, 331, 655
SinI GGWCC 2 cut(s) 113, 466
SmiMI CAYNNNNRTG 1 cut(s) 656
Sse9I AATT 4 cut(s) 173, 325, 403, 717
SsiI CCGC 6 cut(s) 15, 28, 64, 212, 778, 939
SspMI CTAG 3 cut(s) 38, 434, 770
StyD4I CCNGG 2 cut(s) 20, 668
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 4 cut(s) 49, 251, 391, 556
TaiI ACGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 33, 476, 794
TaqII GACCGA 1 cut(s) 116
TasI AATT 4 cut(s) 173, 325, 403, 717
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 30, 214
TfiI GAWTC 3 cut(s) 445, 682, 913
Tru1I TTAA 3 cut(s) 222, 348, 626
Tru9I TTAA 3 cut(s) 222, 348, 626
TseFI GTSAC 2 cut(s) 895, 932
TseI GCWGC 1 cut(s) 882
Tsp45I GTSAC 2 cut(s) 895, 932
TspDTI ATGAA 2 cut(s) 296, 960
TspGWI ACGGA 3 cut(s) 597, 612, 670
VpaK11BI GGWCC 2 cut(s) 113, 466
XapI RAATTY 3 cut(s) 173, 325, 403
XceI RCATGY 2 cut(s) 298, 490
XmnI GAANNNNTTC 1 cut(s) 721
XspI CTAG 3 cut(s) 38, 434, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.