Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Forward (+)

33076876 .. 33080054

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0288300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGATGCTGAAGATCAAGAGGGTTCCTACTGTGGTTTCGAATTACCAGAAAGATGAGGCCGACGAGGGTCGCCGAGCTGGGGGCTGTGGCCGCAACTGCCTCAACAAATGTTGCATTTCAGGAGCAAAACTTCCATTGTATGCTTTCAAGAAGCAAAACAACTCATCTGGTGACAAGGGATTTTCCGGACATGAGAAGCAAGAGGCTCCCGTCGCTTTTCTTGACTCATTGCTTCTTGGAGAGTGGGAGGATCGCATGCAGAAGGGGCTATTTCGATATGATGTCACTGCCTGCGAAACCAAGGTGATCCCCGGCCAGTTTGGCTTCATTGCCCAGCTCAATGAGGGCCGCCACCTTAAGAAGCGACCAACCGAGTTTCGAGTTGACAAGGTTCTCCAACCTTTTGATGGTAGCAAGTTCAACTTCACTAAAGTTGGCCAAGAGGAGGTTCTGTTCCAGTTTGAAGCGAGTGAAGATGGTGAAGTTCAGTTTCACCCTAATGCACCTATTGATGTTGAAAATTCTCCGAGCGTTGTTGCCATCAATGTCAGTCCAATTGAATATGGGCATGTGCTGTTGATTCCTCGTATTCTTGAGTCTTTGCCACAAAGGATTGATCGTGAAAGCTTCTTGCTTGCACTTCACATGGCGGCAGAAGCAGGGAATCCATACTTCCGGTTGGGTTACAACAGCTTGGGTGCATTTGCTACCATCAATCACCTTCACTTCCAGGCTTACTACTTGGCCGTAACCTTTCCCATTGAAAAGGCTCCTACTAAGAAAATAACCACCTCGGATGTTGGGGTGAAGATCTCTGAGCTTCTGAACTATCCTGTTAGAGGTCTAGTTTTTGAGGGTGGAAATACTCTGGAAGATTTGTCAAACTCTGTCTCTGATGCCTGCATTTGCCTTCAAGAGAACAACATTCCTTACAATGTCCTCATATCCGACTGTGGAAAGCGGATCTTTCTCTTGCCACAGTGTTATGCTGAGAAACAAGCTCTTGGGGAAGTTAGGGCAGAGCTTCTGGATACTCAGGTGAATCCAGCTGTGTGGGAAATTAGTGGACATATGGTGCTAAAGAGGAGGGAGGACTATGATGAGGCTTCTGATGAAAATGCTTGGAAGCTCCTGGCTGAGGTCTCTCTTTCTGAAGAGAGGTTCCAAGAGGTGAACGCTCTTATATTTGGAGCCATTGCTTGCGGTGGCGATAATGGGAATGCAAATTTACTAGAGGATCCAGATGTGAAGCCTCGCTCTCATGAAGAAGTCAATGTCATTAACAAAAGCTCCCGTCATGCTATAGTGTCCGGGACACAGGAATGCCTCGTTCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

446

Amino Acids

49.66

Weight (kDa)

5.32

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	74 - 246	4.2e-78	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	253 - 400	9.4e-71	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	185
AciI	CCGC	5 cut(s)	91, 349, 650, 961, 1203
AclWI	GGATC	5 cut(s)	258, 301, 971, 1232, 1245
AcoI	YGGCCR	4 cut(s)	88, 313, 436, 744
AcsI	RAATTY	2 cut(s)	520, 1225
AcuI	CTGAAG	2 cut(s)	29, 1173
AfiI	CCNNNNNNNGG	5 cut(s)	79, 407, 445, 839, 1138
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	7 cut(s)	148, 421, 464, 518, 560, 764, 914
AjnI	CCWGG	2 cut(s)	729, 1131
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AloI	GAACNNNNNNTCC	2 cut(s)	437, 469
Alw26I	GTCTC	2 cut(s)	895, 1147
AlwI	GGATC	5 cut(s)	258, 301, 971, 1232, 1245
Aor13HI	TCCGGA	1 cut(s)	185
AoxI	GGCC	6 cut(s)	57, 88, 313, 346, 436, 744
ApoI	RAATTY	2 cut(s)	520, 1225
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	2 cut(s)	312, 1312
AsuHPI	GGTGA	8 cut(s)	182, 316, 485, 491, 710, 817, 1051, 1183
AsuII	TTCGAA	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	1023, 1056
BalI	TGGCCA	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	1237
BbvCI	CCTCAGC	1 cut(s)	1137
BccI	CCATC	4 cut(s)	401, 470, 548, 719
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	2 cut(s)	731, 1133
BciVI	GTATCC	1 cut(s)	1024
BcnI	CCSGG	2 cut(s)	312, 1312
BcoDI	GTCTC	2 cut(s)	895, 1147
BfaI	CTAG	2 cut(s)	845, 1232
BfmI	CTRYAG	2 cut(s)	1302, 1334
BfrI	CTTAAG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	1024
BglI	GCCNNNNNGGC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	810
BisI	GCNGC	3 cut(s)	91, 349, 651
BlsI	GCNGC	3 cut(s)	92, 350, 652
Bme1390I	CCNGG	4 cut(s)	312, 731, 1133, 1312
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	6 cut(s)	24, 207, 771, 1163, 1192, 1239
BmrFI	CCNGG	4 cut(s)	312, 731, 1133, 1312
BmsI	GCATC	1 cut(s)	886
BoxI	GACNNNNGTC	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	1137
Bpu14I	TTCGAA	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	2 cut(s)	312, 1312
BsaI	GGTCTC	1 cut(s)	1147
BsaJI	CCNNGG	3 cut(s)	300, 310, 792
BsaWI	WCCGGW	2 cut(s)	185, 675
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 1274, 1304
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 407, 445, 839, 1138
Bse1I	ACTGG	2 cut(s)	316, 457
Bse3DI	GCAATG	3 cut(s)	227, 327, 1194
BseAI	TCCGGA	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	731, 1133
BseDI	CCNNGG	3 cut(s)	300, 310, 792
BseGI	GGATG	1 cut(s)	802
BseLI	CCNNNNNNNGG	5 cut(s)	79, 407, 445, 839, 1138
BseMI	GCAATG	3 cut(s)	227, 327, 1194
BseMII	CTCAG	4 cut(s)	807, 981, 1049, 1128
BseNI	ACTGG	2 cut(s)	316, 457
BseRI	GAGGAG	2 cut(s)	458, 1099
BseYI	CCCAGC	2 cut(s)	77, 333
BshFI	GGCC	6 cut(s)	59, 90, 315, 348, 438, 746
BsiSI	CCGG	4 cut(s)	186, 312, 676, 1311
BslFI	GGGAC	1 cut(s)	1327
BslI	CCNNNNNNNGG	5 cut(s)	79, 407, 445, 839, 1138
BsmAI	GTCTC	2 cut(s)	895, 1147
BsmFI	GGGAC	1 cut(s)	1327
BsmI	GAATGC	2 cut(s)	1225, 1328
BsnI	GGCC	6 cut(s)	59, 90, 315, 348, 438, 746
Bso31I	GGTCTC	1 cut(s)	1147
Bsp119I	TTCGAA	1 cut(s)	38
Bsp13I	TCCGGA	1 cut(s)	185
Bsp143I	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
BspACI	CCGC	5 cut(s)	91, 349, 650, 961, 1203
BspANI	GGCC	6 cut(s)	59, 90, 315, 348, 438, 746
BspCNI	CTCAG	4 cut(s)	808, 982, 1048, 1129
BspEI	TCCGGA	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	1261
BspLI	GGNNCC	6 cut(s)	24, 207, 771, 1163, 1192, 1239
BspMAI	CTGCAG	1 cut(s)	1338
BspPI	GGATC	5 cut(s)	258, 301, 971, 1232, 1245
BspT104I	TTCGAA	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	1147
BsrDI	GCAATG	3 cut(s)	227, 327, 1194
BsrI	ACTGG	2 cut(s)	316, 457
BssECI	CCNNGG	3 cut(s)	300, 310, 792
BssMI	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	731, 1133
Bst4CI	ACNGT	3 cut(s)	31, 953, 981
Bst6I	CTCTTC	1 cut(s)	1149
BstAFI	CTTAAG	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	5 cut(s)	257, 292, 636, 901, 1201
BstDEI	CTNAG	5 cut(s)	777, 816, 990, 1035, 1137
BstENI	CCTNNNNNAGG	2 cut(s)	837, 1136
BstF5I	GGATG	1 cut(s)	802
BstKTI	GATC	7 cut(s)	15, 253, 309, 619, 813, 966, 1240
BstMAI	GTCTC	2 cut(s)	895, 1147
BstMBI	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 96, 212, 265, 321, 656
BstNI	CCWGG	2 cut(s)	731, 1133
BstNSI	RCATGY	2 cut(s)	259, 572
BstPAI	GACNNNNGTC	1 cut(s)	66
BstSCI	CCNGG	4 cut(s)	310, 729, 1131, 1310
BstSFI	CTRYAG	2 cut(s)	1302, 1334
BstX2I	RGATCY	3 cut(s)	810, 963, 1237
BstXI	CCANNNNNNTGG	1 cut(s)	1053
BstYI	RGATCY	3 cut(s)	810, 963, 1237
BsuI	GTATCC	1 cut(s)	1024
BsuRI	GGCC	6 cut(s)	59, 90, 315, 348, 438, 746
BtsCI	GGATG	1 cut(s)	802
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	285, 986
Cac8I	GCNNGC	5 cut(s)	257, 292, 636, 901, 1201
CciI	TCATGA	1 cut(s)	1261
Cfr13I	GGNCC	1 cut(s)	346
CviAII	CATG	6 cut(s)	191, 256, 569, 646, 1262, 1298
DdeI	CTNAG	5 cut(s)	777, 816, 990, 1035, 1137
DpnI	GATC	7 cut(s)	14, 252, 308, 618, 812, 965, 1239
DpnII	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
EaeI	YGGCCR	4 cut(s)	88, 313, 436, 744
Eam1104I	CTCTTC	1 cut(s)	1149
EarI	CTCTTC	1 cut(s)	1149
Eco130I	CCWWGG	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	1147
Eco57I	CTGAAG	2 cut(s)	29, 1173
EcoNI	CCTNNNNNAGG	2 cut(s)	837, 1136
EcoRII	CCWGG	2 cut(s)	729, 1131
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	6 cut(s)	194, 259, 572, 649, 1265, 1301
FalI	AAGNNNNNCTT	4 cut(s)	407, 439, 950, 982
FaqI	GGGAC	1 cut(s)	1327
FatI	CATG	6 cut(s)	190, 255, 568, 645, 1261, 1297
FauNDI	CATATG	1 cut(s)	1071
Fnu4HI	GCNGC	3 cut(s)	91, 349, 651
FokI	GGATG	1 cut(s)	809
Fsp4HI	GCNGC	3 cut(s)	91, 349, 651
FspBI	CTAG	2 cut(s)	845, 1232
GluI	GCNGC	3 cut(s)	91, 349, 651
GsaI	CCCAGC	2 cut(s)	81, 337
HaeIII	GGCC	6 cut(s)	59, 90, 315, 348, 438, 746
HapII	CCGG	4 cut(s)	186, 312, 676, 1311
Hin1II	CATG	6 cut(s)	194, 259, 572, 649, 1265, 1301
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	5 cut(s)	224, 580, 596, 664, 1042
HpaII	CCGG	4 cut(s)	186, 312, 676, 1311
HphI	GGTGA	8 cut(s)	182, 316, 485, 491, 710, 817, 1051, 1183
Hpy166II	GTNNAC	3 cut(s)	385, 1067, 1174
Hpy188I	TCNGA	8 cut(s)	528, 796, 817, 825, 895, 949, 1111, 1153
Hpy8I	GTNNAC	3 cut(s)	385, 1067, 1174
Hpy99I	CGWCG	2 cut(s)	65, 215
HpyAV	CCTTC	3 cut(s)	256, 731, 920
HpyCH4III	ACNGT	3 cut(s)	31, 953, 981
HpyCH4V	TGCA	8 cut(s)	114, 259, 503, 638, 701, 903, 1223, 1336
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 96, 212, 265, 321, 656
HpyF3I	CTNAG	5 cut(s)	777, 816, 990, 1035, 1137
Hsp92II	CATG	6 cut(s)	194, 259, 572, 649, 1265, 1301
Kpn2I	TCCGGA	1 cut(s)	185
Kzo9I	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
LmnI	GCTCC	6 cut(s)	122, 211, 775, 1134, 1190, 1295
LweI	GCATC	1 cut(s)	886
MaeI	CTAG	2 cut(s)	845, 1232
MaeIII	GTNAC	4 cut(s)	170, 283, 683, 748
MalI	GATC	7 cut(s)	14, 252, 308, 618, 812, 965, 1239
MboI	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
MboII	GAAGA	6 cut(s)	22, 485, 820, 884, 1166, 1277
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	3 cut(s)	810, 963, 1237
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	5 cut(s)	40, 520, 555, 1059, 1225
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	218, 605
MmeI	TCCRAC	2 cut(s)	421, 972
Mox20I	TGGCCA	1 cut(s)	438
MroI	TCCGGA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	2 cut(s)	357, 1281
MslI	CAYNNNNRTG	2 cut(s)	498, 1321
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	1049
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	4 cut(s)	186, 312, 676, 1311
MspR9I	CCNGG	4 cut(s)	312, 731, 1133, 1312
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	1225, 1328
MvaI	CCWGG	2 cut(s)	731, 1133
MwoI	GCNNNNNNNGC	6 cut(s)	90, 96, 212, 265, 321, 656
NciI	CCSGG	2 cut(s)	312, 1312
NdeI	CATATG	1 cut(s)	1071
NdeII	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
NlaIII	CATG	6 cut(s)	194, 259, 572, 649, 1265, 1301
NlaIV	GGNNCC	6 cut(s)	24, 207, 771, 1163, 1192, 1239
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	2 cut(s)	170, 283
NspI	RCATGY	2 cut(s)	259, 572
NspV	TTCGAA	1 cut(s)	38
PaeI	GCATGC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	1261
PctI	GAATGC	2 cut(s)	1225, 1328
PfeI	GAWTC	3 cut(s)	580, 664, 1042
PfoI	TCCNGGA	1 cut(s)	1310
PkrI	GCNGC	3 cut(s)	92, 350, 652
PleI	GAGTC	2 cut(s)	218, 604
PpsI	GAGTC	2 cut(s)	218, 604
PshAI	GACNNNNGTC	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	729, 1131
PspFI	CCCAGC	2 cut(s)	77, 333
PspGI	CCWGG	2 cut(s)	729, 1131
PspN4I	GGNNCC	6 cut(s)	24, 207, 771, 1163, 1192, 1239
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	1338
PsuI	RGATCY	3 cut(s)	810, 963, 1237
PvuII	CAGCTG	1 cut(s)	1049
RseI	CAYNNNNRTG	2 cut(s)	498, 1321
SaqAI	TTAA	2 cut(s)	357, 1281
SatI	GCNGC	3 cut(s)	91, 349, 651
Sau3AI	GATC	7 cut(s)	12, 250, 306, 616, 810, 963, 1237
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	2 cut(s)	218, 605
ScrFI	CCNGG	4 cut(s)	312, 731, 1133, 1312
SfaNI	GCATC	1 cut(s)	886
SfcI	CTRYAG	2 cut(s)	1302, 1334
SfuI	TTCGAA	1 cut(s)	38
SmiMI	CAYNNNNRTG	2 cut(s)	498, 1321
SmlI	CTYRAG	2 cut(s)	356, 593
SmoI	CTYRAG	2 cut(s)	356, 593
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	5 cut(s)	40, 520, 555, 1059, 1225
SsiI	CCGC	5 cut(s)	91, 349, 650, 961, 1203
SspMI	CTAG	2 cut(s)	845, 1232
StyD4I	CCNGG	4 cut(s)	310, 729, 1131, 1310
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	3 cut(s)	31, 953, 981
TaqI	TCGA	3 cut(s)	38, 274, 379
TasI	AATT	5 cut(s)	40, 520, 555, 1059, 1225
TauI	GCSGC	3 cut(s)	93, 351, 653
TfiI	GAWTC	3 cut(s)	580, 664, 1042
Tru1I	TTAA	2 cut(s)	357, 1281
Tru9I	TTAA	2 cut(s)	357, 1281
TscAI	CASTG	2 cut(s)	292, 986
TseFI	GTSAC	2 cut(s)	170, 283
Tsp45I	GTSAC	2 cut(s)	170, 283
TspDTI	ATGAA	3 cut(s)	316, 1128, 1278
TspRI	CASTG	2 cut(s)	292, 986
Vha464I	CTTAAG	1 cut(s)	356
XagI	CCTNNNNNAGG	2 cut(s)	837, 1136
XapI	RAATTY	2 cut(s)	520, 1225
XceI	RCATGY	2 cut(s)	259, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XspI	CTAG	2 cut(s)	845, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.