RchiOBHm_Chr5g0054781

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002803
Physical Location & Seq
Reverse (-)
57483183 .. 57483651
469 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33187

Sequence Viewer

Length: 348 bp
ATGTGGCAGACCAGGGGCGCCTGGGGCCGAATCGATCGAGACGACGCTGTTGATGCCTGGGGAGGATGGAGTCTTTTTCAAACTCTTCTTCAGACACTCAAAAGAATTGCTTCTAAACATGGTGTCACAATCCCCAATCTTGCTGTGAAATACATACTAGATCAGCGAGGTGTGGCAGGATCGATGATAGGCGTTAGACTCGGGTTGTCAGAACATATCCAAGACTCTAATGCTGTGTTTTCACTTGCTCTTGATGAGGATGATATAAGCAGCATAGAAGAAGTCACAAAGAAAGGGAAGAATCTCCTTCAAGTTATTGGTGACTGCGGAGATGAATATAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

5.61

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 16 - 95 1.3e-13 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 18
AgsI TTSAA 2 cut(s) 80, 311
AjnI CCWGG 3 cut(s) 11, 20, 56
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 200
BanI GGYRCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 60
BciT130I CCWGG 3 cut(s) 13, 22, 58
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 158
BfoI RGCGCY 1 cut(s) 21
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 3 cut(s) 13, 22, 58
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 19, 26
BmrFI CCNGG 3 cut(s) 13, 22, 58
BmsI GCATC 1 cut(s) 43
Bsa29I ATCGAT 2 cut(s) 33, 182
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 12, 21, 57
BseBI CCWGG 3 cut(s) 13, 22, 58
BseCI ATCGAT 2 cut(s) 33, 182
BseDI CCNNGG 3 cut(s) 12, 21, 57
BseGI GGATG 2 cut(s) 71, 265
BseXI GCAGC 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 17
BshVI ATCGAT 2 cut(s) 33, 182
BsiEI CGRYCG 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 200
Bsp143I GATC 3 cut(s) 34, 160, 179
BspACI CCGC 1 cut(s) 327
BspANI GGCC 1 cut(s) 27
BspDI ATCGAT 2 cut(s) 33, 182
BspLI GGNNCC 2 cut(s) 19, 26
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 12, 21, 57
BssMI GATC 3 cut(s) 34, 160, 179
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 3 cut(s) 13, 22, 58
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 18
BstF5I GGATG 2 cut(s) 71, 265
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 37, 163, 182
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 3 cut(s) 34, 160, 179
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 24, 53
BstNI CCWGG 3 cut(s) 13, 22, 58
BstSCI CCNGG 3 cut(s) 11, 20, 56
BstV1I GCAGC 1 cut(s) 282
Bsu15I ATCGAT 2 cut(s) 33, 182
BsuRI GGCC 1 cut(s) 27
BsuTUI ATCGAT 2 cut(s) 33, 182
BtsCI GGATG 2 cut(s) 71, 265
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 25
ClaI ATCGAT 2 cut(s) 33, 182
CseI GACGC 1 cut(s) 53
CviAII CATG 1 cut(s) 119
CviJI RGCY 1 cut(s) 27
CviKI_1 RGCY 1 cut(s) 27
DinI GGCGCC 1 cut(s) 19
DpnI GATC 3 cut(s) 36, 162, 181
DpnII GATC 3 cut(s) 34, 160, 179
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 200
EcoRII CCWGG 3 cut(s) 11, 20, 56
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 1 cut(s) 122
FaiI YATR 6 cut(s) 120, 155, 216, 266, 275, 339
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 2 cut(s) 78, 272
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 1 cut(s) 27
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 5 cut(s) 30, 70, 198, 224, 301
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 93, 211
Hpy188III TCNNGA 2 cut(s) 38, 251
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 53
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 18
KasI GGCGCC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 34, 160, 179
LpnPI CCDG 6 cut(s) 7, 25, 34, 43, 70, 162
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 3 cut(s) 124, 283, 320
MalI GATC 3 cut(s) 36, 162, 181
MboI GATC 3 cut(s) 34, 160, 179
MboII GAAGA 4 cut(s) 77, 80, 290, 310
MluCI AATT 1 cut(s) 105
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 3 cut(s) 79, 192, 218
MnlI CCTC 3 cut(s) 56, 161, 250
MroXI GAANNNNTTC 1 cut(s) 109
MspR9I CCNGG 3 cut(s) 13, 22, 58
MvaI CCWGG 3 cut(s) 13, 22, 58
MwoI GCNNNNNNNGC 2 cut(s) 24, 53
NarI GGCGCC 1 cut(s) 18
NdeII GATC 3 cut(s) 34, 160, 179
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 19, 26
NmuCI GTSAC 3 cut(s) 124, 283, 320
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 30, 301
PkrI GCNGC 1 cut(s) 272
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 3 cut(s) 78, 192, 218
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 3 cut(s) 78, 192, 218
Psp6I CCWGG 3 cut(s) 11, 20, 56
PspGI CCWGG 3 cut(s) 11, 20, 56
PspN4I GGNNCC 2 cut(s) 19, 26
PspPI GGNCC 1 cut(s) 25
PvuI CGATCG 1 cut(s) 37
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 3 cut(s) 34, 160, 179
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 3 cut(s) 79, 192, 218
ScrFI CCNGG 3 cut(s) 13, 22, 58
SetI ASST 1 cut(s) 172
SfaNI GCATC 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 19
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 327
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 11, 20, 56
TaqI TCGA 3 cut(s) 33, 37, 182
TasI AATT 1 cut(s) 105
TfiI GAWTC 2 cut(s) 30, 301
TseFI GTSAC 3 cut(s) 124, 283, 320
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 3 cut(s) 124, 283, 320
TspDTI ATGAA 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.