Rroxscaffold_1G00026090

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002803
Physical Location & Seq
Forward (+)
32806010 .. 32812112
6103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026090.1

Sequence Viewer

Length: 1035 bp
ATGCTCCGCTACGCCGATGCTGGCCTCTCCACCTTCGACATGGCCGACCACTATAAACAAGTTGTGGTTAAGAATGGGAAGGATGCATTAGACATATGTAGAGTTGTGAATGGGATGTGGCAGACGAGCGGGGGCTGGGGTCGAATTGATAGAGACAATGCTGTTGATGCTATGCTTAATTATGCTGATGCTGGACTCGCTACGTTTGATATGGCAGATATATGTGTAGCACTCGATTTTCATTGGATGCTACTTCATATTGATTGGGTCTCTGATTTTGAAGATGGACCGGCCGAAGATCTGTATGGCATCTTTATCAATCGTGTTCGTAAGGAGCGACCACCAGAATTCTTGGAGAAGGTTAGAGGTCTCACAAAATGGGTGACGCCACCAGTTAAGATGACAAGCAGTTTTGTGAGGGACAGTATAAATGTTTCAAGAAAGAGAATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACGCAAATTCGGGTTACCTTGATGCACTTAAACACCTTACAGATTTGAAAGACGAAGGTAAAATAACAACCATAGCTTTGACAAATTTTGATACCGAGAGATTACAGATAATCCTAGAAAATGAGATTCCTGTTGTAAGCAATCAGGTCCAACATTCGATTGTTGACATGCGTCCTCAACAGCAAATGGCAGAGCTTTCTGCCAATAGGCTTTCAAGCATTTCCAGAATTCCTTATGAAAGTAATAGTTTCATTTGCAGGATGGAGTCTTTTCAAACTCTTCTTCAGACACTCAAAAGAATTGCTTCTAAACATGGTGTCACAATCCCCAATGTTGCTGTGAAATACATACTAGATCAGCGAGGTGTGGCAGGATCGATGATAGGTGTTAGACTCGGGTTGTCAAAACATATCCAAGACTCTAATGCTGTGTTTTCACTTGCTCTTGATGAGGATGATATAGGCAGCATTGAAGAAGTCACAAAGAAAGGGAAGAATCTCCTTCAAGTTATTGGTGACTGCGGAGATGAATATAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

344

Amino Acids

38.94

Weight (kDa)

5.43

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 35 - 324 1.1e-52 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AciI CCGC 3 cut(s) 7, 129, 1014
AclWI GGATC 1 cut(s) 874
AcoI YGGCCR 2 cut(s) 42, 291
AcsI RAATTY 4 cut(s) 347, 499, 577, 720
AcuI CTGAAG 2 cut(s) 458, 761
AcyI GRCGYC 1 cut(s) 386
AgsI TTSAA 7 cut(s) 281, 438, 541, 708, 767, 965, 998
AluBI AGCT 2 cut(s) 569, 688
AluI AGCT 2 cut(s) 569, 688
Alw26I GTCTC 3 cut(s) 147, 274, 374
AlwI GGATC 1 cut(s) 874
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 3 cut(s) 22, 42, 291
ApeKI GCWGC 1 cut(s) 957
ApoI RAATTY 4 cut(s) 347, 499, 577, 720
Asp700I GAANNNNTTC 1 cut(s) 796
AspS9I GGNCC 2 cut(s) 287, 640
AsuHPI GGTGA 2 cut(s) 394, 1019
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 2 cut(s) 287, 640
BbvI GCAGC 1 cut(s) 969
BccI CCATC 2 cut(s) 278, 748
BcoDI GTCTC 3 cut(s) 147, 274, 374
BfaI CTAG 2 cut(s) 608, 845
BglII AGATCT 1 cut(s) 298
BisI GCNGC 1 cut(s) 958
BlsI GCNGC 1 cut(s) 959
Bme18I GGWCC 2 cut(s) 287, 640
BmeT110I CYCGRG 1 cut(s) 887
BmgT120I GGNCC 2 cut(s) 287, 640
BmsI GCATC 7 cut(s) 7, 73, 157, 178, 237, 318, 505
BoxI GACNNNNGTC 1 cut(s) 663
Bsa29I ATCGAT 1 cut(s) 869
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 2 cut(s) 274, 374
BsaJI CCNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 392
BseCI ATCGAT 1 cut(s) 869
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 6 cut(s) 88, 120, 252, 457, 759, 952
BseNI ACTGG 1 cut(s) 392
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 969
BseYI CCCAGC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 3 cut(s) 24, 44, 293
BshVI ATCGAT 1 cut(s) 869
BsiEI CGRYCG 1 cut(s) 294
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 434
BsmAI GTCTC 3 cut(s) 147, 274, 374
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 24, 44, 293
Bso31I GGTCTC 2 cut(s) 274, 374
BsoBI CYCGRG 1 cut(s) 887
Bsp143I GATC 3 cut(s) 298, 847, 866
BspACI CCGC 3 cut(s) 7, 129, 1014
BspANI GGCC 3 cut(s) 24, 44, 293
BspDI ATCGAT 1 cut(s) 869
BspPI GGATC 1 cut(s) 874
BspTNI GGTCTC 2 cut(s) 274, 374
BsrBI CCGCTC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 3 cut(s) 298, 847, 866
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 777
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 22
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 6 cut(s) 88, 120, 252, 457, 759, 952
BstKTI GATC 3 cut(s) 301, 850, 869
BstMAI GTCTC 3 cut(s) 147, 274, 374
BstMBI GATC 3 cut(s) 298, 847, 866
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 167, 197
BstNSI RCATGY 2 cut(s) 472, 664
BstPAI GACNNNNGTC 1 cut(s) 663
BstPI GGTNACC 1 cut(s) 506
BstV1I GCAGC 1 cut(s) 969
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZI CGGCCG 1 cut(s) 291
Bsu15I ATCGAT 1 cut(s) 869
BsuRI GGCC 3 cut(s) 24, 44, 293
BsuTUI ATCGAT 1 cut(s) 869
BtsCI GGATG 6 cut(s) 88, 120, 252, 457, 759, 952
Cac8I GCNNGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 287, 640
ClaI ATCGAT 1 cut(s) 869
CseI GACGC 2 cut(s) 394, 653
CviAII CATG 4 cut(s) 40, 469, 661, 806
CviJI RGCY 8 cut(s) 24, 44, 135, 293, 458, 569, 688, 703
CviKI_1 RGCY 8 cut(s) 24, 44, 135, 293, 458, 569, 688, 703
DpnI GATC 3 cut(s) 300, 849, 868
DpnII GATC 3 cut(s) 298, 847, 866
EaeI YGGCCR 2 cut(s) 42, 291
EagI CGGCCG 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
EclXI CGGCCG 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 462
Eco31I GGTCTC 2 cut(s) 274, 374
Eco47I GGWCC 2 cut(s) 287, 640
Eco52I CGGCCG 1 cut(s) 291
Eco57I CTGAAG 2 cut(s) 458, 761
Eco88I CYCGRG 1 cut(s) 887
Eco91I GGTNACC 1 cut(s) 506
EcoO65I GGTNACC 1 cut(s) 506
EcoRI GAATTC 2 cut(s) 347, 720
EcoT14I CCWWGG 1 cut(s) 462
EcoT22I ATGCAT 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 4 cut(s) 43, 472, 664, 809
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 39, 468, 660, 805
FauI CCCGC 1 cut(s) 122
FauNDI CATATG 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 958
FokI GGATG 6 cut(s) 95, 127, 259, 464, 766, 959
Fsp4HI GCNGC 1 cut(s) 958
FspBI CTAG 2 cut(s) 608, 845
GluI GCNGC 1 cut(s) 958
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 3 cut(s) 24, 44, 293
HapII CCGG 1 cut(s) 290
HgaI GACGC 2 cut(s) 394, 653
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 4 cut(s) 43, 472, 664, 809
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 6 cut(s) 195, 619, 758, 885, 911, 988
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 394, 1019
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 2 cut(s) 274, 780
Hpy188III TCNNGA 3 cut(s) 438, 717, 938
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 5 cut(s) 43, 73, 352, 542, 1004
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 86, 518, 750
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 197
HpySE526I ACGT 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 4 cut(s) 43, 472, 664, 809
Kzo9I GATC 3 cut(s) 298, 847, 866
LmnI GCTCC 2 cut(s) 9, 334
Lsp1109I GCAGC 1 cut(s) 969
LweI GCATC 7 cut(s) 7, 73, 157, 178, 237, 318, 505
MaeI CTAG 2 cut(s) 608, 845
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 5 cut(s) 382, 506, 811, 970, 1007
MalI GATC 3 cut(s) 300, 849, 868
MbiI CCGCTC 1 cut(s) 129
MboI GATC 3 cut(s) 298, 847, 866
MboII GAAGA 6 cut(s) 293, 308, 764, 767, 977, 997
MflI RGATCY 1 cut(s) 298
MluCI AATT 7 cut(s) 144, 178, 347, 499, 577, 720, 792
MlyI GAGTC 4 cut(s) 189, 767, 879, 905
MmeI TCCRAC 1 cut(s) 667
MnlI CCTC 6 cut(s) 35, 359, 411, 678, 848, 937
Mph1103I ATGCAT 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 4 cut(s) 69, 177, 396, 522
MspI CCGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 167, 197
NdeI CATATG 1 cut(s) 95
NdeII GATC 3 cut(s) 298, 847, 866
NlaIII CATG 4 cut(s) 43, 472, 664, 809
NmuCI GTSAC 4 cut(s) 382, 811, 970, 1007
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 2 cut(s) 472, 664
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 334
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 2 cut(s) 619, 988
PkrI GCNGC 1 cut(s) 959
PleI GAGTC 4 cut(s) 189, 766, 879, 905
PpsI GAGTC 4 cut(s) 189, 766, 879, 905
PshAI GACNNNNGTC 1 cut(s) 663
PspEI GGTNACC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 287, 640
PsuI RGATCY 1 cut(s) 298
SaqAI TTAA 4 cut(s) 69, 177, 396, 522
SatI GCNGC 1 cut(s) 958
Sau3AI GATC 3 cut(s) 298, 847, 866
Sau96I GGNCC 2 cut(s) 287, 640
SchI GAGTC 4 cut(s) 189, 767, 879, 905
SfaNI GCATC 7 cut(s) 7, 73, 157, 178, 237, 318, 505
SinI GGWCC 2 cut(s) 287, 640
Sse9I AATT 7 cut(s) 144, 178, 347, 499, 577, 720, 792
SsiI CCGC 3 cut(s) 7, 129, 1014
SspMI CTAG 2 cut(s) 608, 845
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 425
TaiI ACGT 1 cut(s) 206
TaqI TCGA 5 cut(s) 36, 142, 234, 650, 869
TasI AATT 7 cut(s) 144, 178, 347, 499, 577, 720, 792
TfiI GAWTC 2 cut(s) 619, 988
Tru1I TTAA 4 cut(s) 69, 177, 396, 522
Tru9I TTAA 4 cut(s) 69, 177, 396, 522
TseFI GTSAC 4 cut(s) 382, 811, 970, 1007
TseI GCWGC 1 cut(s) 957
Tsp45I GTSAC 4 cut(s) 382, 811, 970, 1007
TspDTI ATGAA 6 cut(s) 230, 245, 470, 733, 744, 1035
VpaK11BI GGWCC 2 cut(s) 287, 640
XapI RAATTY 4 cut(s) 347, 499, 577, 720
XceI RCATGY 2 cut(s) 472, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 2 cut(s) 608, 845
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.