Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001552.1

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Reverse (-)

168921 .. 171902

Gene Structure 2982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001552.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggttgatgcctggggaggatggagtctttttcaaactcttcttcagacactcaaaagaattgcttctaaacatggtgtcacaatccccaatgttgctgtgaaatacatactagatcagcgaggtgtggcagaatcgatgataggtgttagactcgggttgtcagaacatatccaagactctaatgctgtgttttcacttgctcttgatgaggatgatataagcagcatagaagaagtcacaaagagagggaagaatctccttcaactcttcaagttattggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaacccggatcttgtgttcgtgcgaacacctacaaagcatgctcaagcagttatcttgatgcgacgccatatgaacaaggcactcagattggagtatatgtcgatcaagaatgcaagagagctatgggtagcgctggaagagcgctttggcgatgtccaagatttcctcctccctgacttgaaggttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

6.98

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	406
AfeI	AGCGCT	2 cut(s)	474, 485
AgsI	TTSAA	6 cut(s)	35, 266, 274, 312, 523, 530
AjnI	CCWGG	2 cut(s)	11, 333
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
AlwI	GGATC	1 cut(s)	357
Ama87I	CYCGRG	1 cut(s)	155
Aor51HI	AGCGCT	2 cut(s)	474, 485
ApeKI	GCWGC	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	475, 486
AsuC2I	CCSGG	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	2 cut(s)	15, 309
BciT130I	CCWGG	2 cut(s)	13, 335
BcnI	CCSGG	1 cut(s)	347
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	2 cut(s)	476, 487
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	3 cut(s)	13, 335, 347
BmeT110I	CYCGRG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	13, 335, 347
BmsI	GCATC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
BseBI	CCWGG	2 cut(s)	13, 335
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	26, 220
BseMII	CTCAG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	115, 349, 444
BspCNI	CTCAG	1 cut(s)	438
BspDI	ATCGAT	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	115, 349, 444
BssNI	GRCGYC	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	13, 335
Bst6I	CTCTTC	3 cut(s)	45, 275, 474
BstACI	GRCGYC	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	425
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	26, 220
BstH2I	RGCGCY	2 cut(s)	476, 487
BstHHI	GCGC	2 cut(s)	475, 486
BstKTI	GATC	3 cut(s)	118, 352, 447
BstMBI	GATC	3 cut(s)	115, 349, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	2 cut(s)	13, 335
BstNSI	RCATGY	1 cut(s)	383
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	11, 333, 345
BstV1I	GCAGC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	26, 220
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	2 cut(s)	475, 486
ClaI	ATCGAT	1 cut(s)	137
CseI	GACGC	1 cut(s)	414
CviAII	CATG	2 cut(s)	74, 380
CviJI	RGCY	1 cut(s)	463
CviKI_1	RGCY	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	3 cut(s)	117, 351, 446
DpnII	GATC	3 cut(s)	115, 349, 444
Eam1104I	CTCTTC	3 cut(s)	45, 275, 474
EarI	CTCTTC	3 cut(s)	45, 275, 474
Eco47III	AGCGCT	2 cut(s)	474, 485
Eco57I	CTGAAG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	11, 333
FaeI	CATG	2 cut(s)	77, 383
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	2 cut(s)	73, 379
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	33, 227
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	2 cut(s)	474, 485
GluI	GCNGC	1 cut(s)	226
HaeII	RGCGCY	2 cut(s)	476, 487
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	2 cut(s)	475, 486
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	2 cut(s)	77, 383
Hin6I	GCGC	2 cut(s)	473, 484
HinP1I	GCGC	2 cut(s)	473, 484
HinfI	GANTC	5 cut(s)	25, 134, 153, 179, 256
HpaII	CCGG	1 cut(s)	347
Hpy188I	TCNGA	3 cut(s)	48, 166, 428
Hpy188III	TCNNGA	3 cut(s)	206, 397, 448
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	2 cut(s)	272, 517
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	1 cut(s)	425
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	77, 383
HspAI	GCGC	2 cut(s)	473, 484
Kzo9I	GATC	3 cut(s)	115, 349, 444
LguI	GCTCTTC	1 cut(s)	474
LpnPI	CCDG	6 cut(s)	25, 320, 347, 360, 461, 528
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	79, 238, 283
MalI	GATC	3 cut(s)	117, 351, 446
MboI	GATC	3 cut(s)	115, 349, 444
MboII	GAAGA	6 cut(s)	32, 35, 245, 262, 265, 491
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	3 cut(s)	34, 147, 173
MnlI	CCTC	6 cut(s)	11, 116, 205, 242, 518, 521
MroXI	GAANNNNTTC	1 cut(s)	64
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	3 cut(s)	13, 335, 347
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	13, 335
MwoI	GCNNNNNNNGC	1 cut(s)	481
NciI	CCSGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	3 cut(s)	115, 349, 444
NlaIII	CATG	2 cut(s)	77, 383
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	79, 238
NspI	RCATGY	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	134, 256
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	3 cut(s)	33, 147, 173
PpsI	GAGTC	3 cut(s)	33, 147, 173
Psp6I	CCWGG	2 cut(s)	11, 333
PspEI	GGTNACC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	11, 333
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	474
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	3 cut(s)	115, 349, 444
SchI	GAGTC	3 cut(s)	34, 147, 173
ScrFI	CCNGG	3 cut(s)	13, 335, 347
SetI	ASST	6 cut(s)	127, 148, 343, 373, 465, 528
SfaNI	GCATC	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	1 cut(s)	60
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	3 cut(s)	11, 333, 345
TaqI	TCGA	2 cut(s)	137, 443
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	134, 256
TseFI	GTSAC	2 cut(s)	79, 238
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	2 cut(s)	79, 238
TspDTI	ATGAA	1 cut(s)	428
XceI	RCATGY	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.