Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012706.1

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Reverse (-)

6314 .. 8564

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012706.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggtacttcatattgattgggtctctgattttgaagatggaccggccgaagatctatatggcatctttatcaatcgtgttcgtaaggagcgaccaccagaattcttggagaaggttagaggtctcacaaaatgggtgccgccaccagttaagatgacaagcagttttgtgagggacagtataaatgtttcaagaaagagaatggatgtggcttccttggacatgcttcagtttcattggtgggattacgcaaattcgggttaccttgatgcacttaaacaccttacagatttgaaagacgaaggtaaaataaagaccgtagctttgacaaattttgataccgagagattacagataatcctagaaaatgagattcctgttgtaagcaatcaggtccaacattcgattgttgacatgcgtcctcaacagcaaatggcagagctttgtgagcttaccggagtcaaacttataacgtatgggacagtaatgggtggtctattatctgaaaagttccttgacaccaacttgtccattccgtttgctgggcctccgttaaacactccctccctccaaaagtacatacgggatgatataagcagcatagaagaagtcacaaagaaagggaagaatctccttcaagttattggtgactgcggagatgaatataggcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

224

Amino Acids

25.61

Weight (kDa)

5.32

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	2 cut(s)	140, 654
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	101, 253, 331
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	2 cut(s)	6, 578
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	4 cut(s)	35, 192, 295, 638
AluBI	AGCT	3 cut(s)	323, 442, 451
AluI	AGCT	3 cut(s)	323, 442, 451
Alw26I	GTCTC	2 cut(s)	28, 128
AoxI	GGCC	2 cut(s)	45, 545
ApeKI	GCWGC	1 cut(s)	597
ApoI	RAATTY	3 cut(s)	101, 253, 331
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AspS9I	GGNCC	3 cut(s)	41, 394, 545
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	41, 394
BanI	GGYRCC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	1 cut(s)	32
BcoDI	GTCTC	2 cut(s)	28, 128
BfaI	CTAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	140, 598
BlsI	GCNGC	2 cut(s)	141, 599
Bme18I	GGWCC	2 cut(s)	41, 394
BmgT120I	GGNCC	3 cut(s)	41, 394, 545
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	2 cut(s)	72, 259
BoxI	GACNNNNGTC	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	28, 128
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	211, 592
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseNI	ACTGG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	609
BseYI	CCCAGC	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	47, 547
BshNI	GGYRCC	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	44, 456
BslFI	GGGAC	2 cut(s)	188, 493
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmAI	GTCTC	2 cut(s)	28, 128
BsmFI	GGGAC	2 cut(s)	188, 493
BsnI	GGCC	2 cut(s)	47, 547
Bso31I	GGTCTC	2 cut(s)	28, 128
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	2 cut(s)	140, 654
BspANI	GGCC	2 cut(s)	47, 547
BspLI	GGNNCC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	136
BspTNI	GGTCTC	2 cut(s)	28, 128
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	3 cut(s)	179, 319, 484
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	211, 592
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	2 cut(s)	28, 128
BstMBI	GATC	1 cut(s)	52
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNSI	RCATGY	2 cut(s)	226, 418
BstPAI	GACNNNNGTC	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	47, 547
BtsCI	GGATG	2 cut(s)	211, 592
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	41, 394, 545
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	5, 577
CviAII	CATG	2 cut(s)	223, 415
CviJI	RGCY	6 cut(s)	47, 212, 323, 442, 451, 547
CviKI_1	RGCY	6 cut(s)	47, 212, 323, 442, 451, 547
CviQI	GTAC	2 cut(s)	5, 577
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	28, 128
Eco47I	GGWCC	2 cut(s)	41, 394
Eco52I	CGGCCG	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	226, 418
FaqI	GGGAC	2 cut(s)	188, 493
FatI	CATG	2 cut(s)	222, 414
Fnu4HI	GCNGC	2 cut(s)	140, 598
FokI	GGATG	2 cut(s)	218, 599
Fsp4HI	GCNGC	2 cut(s)	140, 598
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	2 cut(s)	140, 598
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	47, 547
HapII	CCGG	2 cut(s)	44, 456
HgaI	GACGC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	226, 418
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	373, 459, 628
HpaII	CCGG	2 cut(s)	44, 456
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	28, 505
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	3 cut(s)	106, 296, 644
HpyCH4III	ACNGT	3 cut(s)	179, 319, 484
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpySE526I	ACGT	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	226, 418
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	57, 111, 159, 377, 390, 469, 528
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	2 cut(s)	72, 259
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	3 cut(s)	260, 610, 647
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	4 cut(s)	47, 62, 617, 637
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	101, 253, 331
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	6 cut(s)	113, 165, 432, 558, 574, 578
MseI	TTAA	3 cut(s)	150, 276, 554
MspI	CCGG	2 cut(s)	44, 456
MwoI	GCNNNNNNNGC	1 cut(s)	448
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	226, 418
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	610, 647
NspI	RCATGY	2 cut(s)	226, 418
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	373, 628
PkrI	GCNGC	2 cut(s)	141, 599
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PshAI	GACNNNNGTC	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	470
PspEI	GGTNACC	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	3 cut(s)	41, 394, 545
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	6, 578
RsaNI	GTAC	2 cut(s)	5, 577
SaqAI	TTAA	3 cut(s)	150, 276, 554
SatI	GCNGC	2 cut(s)	140, 598
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	3 cut(s)	41, 394, 545
SchI	GAGTC	1 cut(s)	468
SfaNI	GCATC	2 cut(s)	72, 259
SinI	GGWCC	2 cut(s)	41, 394
Sse9I	AATT	3 cut(s)	101, 253, 331
SsiI	CCGC	2 cut(s)	140, 654
SspMI	CTAG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	179, 319, 484
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	404
TasI	AATT	3 cut(s)	101, 253, 331
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	373, 628
Tru1I	TTAA	3 cut(s)	150, 276, 554
Tru9I	TTAA	3 cut(s)	150, 276, 554
TseFI	GTSAC	2 cut(s)	610, 647
TseI	GCWGC	1 cut(s)	597
Tsp45I	GTSAC	2 cut(s)	610, 647
TspDTI	ATGAA	2 cut(s)	224, 675
TspGWI	ACGGA	2 cut(s)	525, 540
VpaK11BI	GGWCC	2 cut(s)	41, 394
XapI	RAATTY	3 cut(s)	101, 253, 331
XceI	RCATGY	2 cut(s)	226, 418
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.