Rroxscaffold_1G00026220

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002803
Physical Location & Seq
Forward (+)
33001719 .. 33004208
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026220.1

Sequence Viewer

Length: 645 bp
ATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGATTATGCAAATTCGGGTTATCTTGATGCACTAAAACACCTTACAGATTTGAAAGACGAAGGTAAAATAAAGACCATAGCTTTGACAAATTTTGATACCGAGAGATTACAGGTAATCCTAGAAAATGAGATTCCTGTTGTAAGCAATCAGGTCCAACATTCGATTGTTGACATGCGTCCTGAACAGCAAATGGCAGAGCTTTCCAATAGGCTTTCAAGCATTTCCAGAACTCCTTATGAAAGTAATAGTTTCATTTGCAGGTATGGGACAGTAATGGGTGGTCTATTATCTGAAAAGTTCCTTGACACCAACTTGTCCATTCCGTTTGCTGGGCCTCCGTTAAACACTCCCTCCCTCCAAAAGTACAAACGGATGGTTGATGCCTGGGGAGGATGGAGTCTTTTTCAAACTCTTCTTCAGACACTCAAAAGAATTGCTTCTAAACATGGTGTCACAATCCCCAATGTTGCTGTGAAATACATACTAGATCAGCGAGGTGTGGCAGGATCGATGATAGGTGTTAGACTCTGGTTGTCAGAACATATCCAAGACTCTAATGCTGTGTTTTCACTTGCTCTTGATGAGGATGATATACATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

214

Amino Acids

24.17

Weight (kDa)

5.47

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 212 1.5e-37 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 291
AclWI GGATC 1 cut(s) 556
AcsI RAATTY 2 cut(s) 52, 130
AcuI CTGAAG 2 cut(s) 11, 443
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 94, 258, 449
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 2 cut(s) 122, 241
AluI AGCT 2 cut(s) 122, 241
AlwI GGATC 1 cut(s) 556
AoxI GGCC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 52, 130
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
Asp700I GAANNNNTTC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 193, 374
AvaII GGWCC 1 cut(s) 193
BccI CCATC 2 cut(s) 409, 429
BciT130I CCWGG 1 cut(s) 427
BfaI CTAG 2 cut(s) 161, 527
BfuAI ACCTGC 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 427
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 193, 374
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 2 cut(s) 58, 412
BoxI GACNNNNGTC 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 15, 426
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 427
BseCI ATCGAT 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 15, 426
BseGI GGATG 4 cut(s) 10, 420, 440, 634
BseLI CCNNNNNNNGG 1 cut(s) 371
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 1 cut(s) 376
BshVI ATCGAT 1 cut(s) 551
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 322
BsnI GGCC 1 cut(s) 376
Bsp143I GATC 2 cut(s) 529, 548
BspANI GGCC 1 cut(s) 376
BspDI ATCGAT 1 cut(s) 551
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 1 cut(s) 556
BssECI CCNNGG 2 cut(s) 15, 426
BssMI GATC 2 cut(s) 529, 548
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 459
BstF5I GGATG 4 cut(s) 10, 420, 440, 634
BstKTI GATC 2 cut(s) 532, 551
BstMBI GATC 2 cut(s) 529, 548
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 2 cut(s) 25, 217
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 425
Bsu15I ATCGAT 1 cut(s) 551
BsuRI GGCC 1 cut(s) 376
BsuTUI ATCGAT 1 cut(s) 551
BtsCI GGATG 4 cut(s) 10, 420, 440, 634
BveI ACCTGC 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 193, 374
ClaI ATCGAT 1 cut(s) 551
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 406
CviAII CATG 3 cut(s) 22, 214, 488
CviJI RGCY 5 cut(s) 11, 122, 241, 253, 376
CviKI_1 RGCY 5 cut(s) 11, 122, 241, 253, 376
CviQI GTAC 1 cut(s) 406
DpnI GATC 2 cut(s) 531, 550
DpnII GATC 2 cut(s) 529, 548
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 11, 443
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 3 cut(s) 25, 217, 491
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 21, 213, 487
FokI GGATG 4 cut(s) 17, 427, 447, 641
FspBI CTAG 2 cut(s) 161, 527
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 376
HgaI GACGC 1 cut(s) 206
Hin1II CATG 3 cut(s) 25, 217, 491
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 4 cut(s) 172, 439, 567, 593
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 334, 462, 580
Hpy188III TCNNGA 4 cut(s) 65, 221, 267, 620
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 50, 71, 300
Hsp92II CATG 3 cut(s) 25, 217, 491
Kzo9I GATC 2 cut(s) 529, 548
LweI GCATC 2 cut(s) 58, 412
MaeI CTAG 2 cut(s) 161, 527
MaeIII GTNAC 1 cut(s) 493
MalI GATC 2 cut(s) 531, 550
MboI GATC 2 cut(s) 529, 548
MboII GAAGA 2 cut(s) 446, 449
MluCI AATT 3 cut(s) 52, 130, 474
MlyI GAGTC 3 cut(s) 448, 561, 587
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 6 cut(s) 387, 403, 407, 425, 530, 619
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 427
NdeII GATC 2 cut(s) 529, 548
NlaIII CATG 3 cut(s) 25, 217, 491
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 2 cut(s) 25, 217
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 1 cut(s) 172
PleI GAGTC 3 cut(s) 447, 561, 587
PpsI GAGTC 3 cut(s) 447, 561, 587
PshAI GACNNNNGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 425
PspPI GGNCC 2 cut(s) 193, 374
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SaqAI TTAA 1 cut(s) 383
Sau3AI GATC 2 cut(s) 529, 548
Sau96I GGNCC 2 cut(s) 193, 374
SchI GAGTC 3 cut(s) 448, 561, 587
ScrFI CCNGG 1 cut(s) 427
SetI ASST 9 cut(s) 84, 106, 124, 156, 195, 243, 305, 541, 562
SfaNI GCATC 2 cut(s) 58, 412
SinI GGWCC 1 cut(s) 193
Sse9I AATT 3 cut(s) 52, 130, 474
SspMI CTAG 2 cut(s) 161, 527
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 2 cut(s) 203, 551
TasI AATT 3 cut(s) 52, 130, 474
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TseFI GTSAC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 23, 283, 294
TspGWI ACGGA 3 cut(s) 354, 369, 427
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 2 cut(s) 52, 130
XceI RCATGY 2 cut(s) 25, 217
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 2 cut(s) 161, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.