Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Reverse (-)

57309820 .. 57310263

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAACTCTCCATTTAAACAACCTCCTACCCAATCCGACGTCGTTCAAATCAACATTTTCAACTCGGCCCAGACCGCGGTCCAACTCGGTCAGGTGCGGTGGCGGCGAGGCAACTCAGGTGAGCAGCAGCAGCGAGACCAACCGAGTCACAGTGAGTAACGGCAACGATTCGTTGGACATATGCCGAGTCCTGAACGGAATGTGGCAGACCAGCGGCGCCTGGGGCCGAATCGACCGAGACGACGCCGTTGAGGCCATGCTCCGCTACGCCGACGCCGGCCTCTCCACCTTCGACATGGCCGACCACTGTAAGACTGTAAGTCTCTCAATTTCTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

114

Amino Acids

12.37

Weight (kDa)

6.04

Isoelectric Point (pI)

23.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	79
AciI	CCGC	6 cut(s)	77, 79, 99, 105, 216, 265
AcoI	YGGCCR	1 cut(s)	300
AcyI	GRCGYC	4 cut(s)	41, 219, 246, 276
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	49, 63
AhdI	GACNNNNNGTC	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	221
Alw26I	GTCTC	3 cut(s)	131, 234, 329
AoxI	GGCC	5 cut(s)	68, 226, 255, 280, 300
ApeKI	GCWGC	3 cut(s)	126, 129, 132
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	69, 81, 226
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	138, 141, 144
BceAI	ACGGC	2 cut(s)	178, 233
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	3 cut(s)	131, 234, 329
BfaI	CTAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	222
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	5 cut(s)	106, 127, 130, 133, 217
BlsI	GCNGC	5 cut(s)	107, 128, 131, 134, 218
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	81
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmgT120I	GGNCC	3 cut(s)	69, 81, 226
BmiI	GGNNCC	2 cut(s)	220, 227
BmrFI	CCNGG	1 cut(s)	223
BoxI	GACNNNNGTC	1 cut(s)	79
BsaHI	GRCGYC	4 cut(s)	41, 219, 246, 276
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	77, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	77, 222
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	138, 141, 144
Bsh1236I	CGCG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	5 cut(s)	70, 228, 257, 282, 302
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	3 cut(s)	131, 234, 329
BsmBI	CGTCTC	1 cut(s)	234
BsnI	GGCC	5 cut(s)	70, 228, 257, 282, 302
Bso31I	GGTCTC	1 cut(s)	131
BspACI	CCGC	6 cut(s)	77, 79, 99, 105, 216, 265
BspANI	GGCC	5 cut(s)	70, 228, 257, 282, 302
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	220, 227
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	77, 222
BssNI	GRCGYC	4 cut(s)	41, 219, 246, 276
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	3 cut(s)	154, 311, 319
BstACI	GRCGYC	4 cut(s)	41, 219, 246, 276
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstMAI	GTCTC	3 cut(s)	131, 234, 329
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 105, 132, 225, 254
BstNI	CCWGG	1 cut(s)	223
BstPAI	GACNNNNGTC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	138, 141, 144
BsuRI	GGCC	5 cut(s)	70, 228, 257, 282, 302
BtgI	CCRYGG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	159, 307
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	3 cut(s)	69, 81, 226
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	2 cut(s)	254, 284
CviAII	CATG	2 cut(s)	259, 298
CviJI	RGCY	5 cut(s)	70, 228, 257, 282, 302
CviKI_1	RGCY	5 cut(s)	70, 228, 257, 282, 302
DdeI	CTNAG	1 cut(s)	117
DinI	GGCGCC	1 cut(s)	220
DraI	TTTAAA	1 cut(s)	18
DriI	GACNNNNNGTC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	300
Eam1105I	GACNNNNNGTC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	221
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	2 cut(s)	262, 301
FaiI	YATR	4 cut(s)	182, 184, 260, 299
FatI	CATG	2 cut(s)	258, 297
FauNDI	CATATG	1 cut(s)	182
Fnu4HI	GCNGC	5 cut(s)	106, 127, 130, 133, 217
Fsp4HI	GCNGC	5 cut(s)	106, 127, 130, 133, 217
FspBI	CTAG	1 cut(s)	343
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	5 cut(s)	106, 127, 130, 133, 217
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	5 cut(s)	70, 228, 257, 282, 302
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	2 cut(s)	254, 284
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	4 cut(s)	41, 219, 246, 276
Hin1II	CATG	2 cut(s)	262, 301
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	4 cut(s)	147, 170, 189, 231
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	39, 337
Hpy188III	TCNNGA	1 cut(s)	193
Hpy99I	CGWCG	4 cut(s)	43, 46, 248, 278
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	3 cut(s)	154, 311, 319
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 105, 132, 225, 254
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	4 cut(s)	41, 219, 246, 276
Hsp92II	CATG	2 cut(s)	262, 301
HspAI	GCGC	1 cut(s)	219
KasI	GGCGCC	1 cut(s)	218
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
KspI	CCGCGG	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	8 cut(s)	79, 85, 104, 206, 208, 226, 235, 292
Lsp1109I	GCAGC	3 cut(s)	138, 141, 144
MaeI	CTAG	1 cut(s)	343
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	148, 158
MluCI	AATT	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	156, 198
MmeI	TCCRAC	3 cut(s)	62, 108, 156
MnlI	CCTC	4 cut(s)	35, 103, 247, 293
MroNI	GCCGGC	1 cut(s)	278
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	79, 216
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	5 cut(s)	76, 105, 132, 225, 254
NaeI	GCCGGC	1 cut(s)	280
NarI	GGCGCC	1 cut(s)	219
NdeI	CATATG	1 cut(s)	182
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	262, 301
NlaIV	GGNNCC	2 cut(s)	220, 227
NmeAIII	GCCGAG	2 cut(s)	46, 212
NmuCI	GTSAC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 300
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	170, 231
PkrI	GCNGC	5 cut(s)	107, 128, 131, 134, 218
PleI	GAGTC	2 cut(s)	155, 197
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	2 cut(s)	155, 197
PshAI	GACNNNNGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	220, 227
PspPI	GGNCC	3 cut(s)	69, 81, 226
SacII	CCGCGG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	5 cut(s)	106, 127, 130, 133, 217
Sau96I	GGNCC	3 cut(s)	69, 81, 226
SchI	GAGTC	2 cut(s)	156, 198
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	5 cut(s)	27, 44, 98, 123, 293
SfoI	GGCGCC	1 cut(s)	220
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	81
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	6 cut(s)	77, 79, 99, 105, 216, 265
SspDI	GGCGCC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	3 cut(s)	154, 311, 319
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	234, 294
TaqII	GACCGA	2 cut(s)	79, 252
TasI	AATT	1 cut(s)	330
TauI	GCSGC	2 cut(s)	108, 219
TfiI	GAWTC	2 cut(s)	170, 231
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	2 cut(s)	159, 314
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	3 cut(s)	126, 129, 132
Tsp45I	GTSAC	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	159, 314
VpaK11BI	GGWCC	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XspI	CTAG	1 cut(s)	343
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.