Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Reverse (-)

60379077 .. 60383192

Gene Structure 4116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG359100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGACAAGCAGTTTTGTGAGGGACAGTATAAATGTTTCAAGAAAGAGAATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACGCAAATTCGGGTTACCTTGATGCACTTAAACACCTTACAGATTTGAAAGACGAAGGTAAAATAAAGACCGTAGCTTTGACAAATTTTGATACCGAGAGATTACAGATAATCCTAGAAAATGAGATTCCTGTTGTAAGCAATCAGGTATATTCTTGCCCTAAGTGCATTCTAATTCTCAAGAAAATATGTTTTGCATCTCCTTATTGCTACCAATTCATATTGCAATGCAATCAGGTCCAACATTCGATTGTTGACATGCGTCCTCAACAGCAAATGGCAGAGCTTTGTCAGCTTACCGGAGTCAAACTTATAACGTATGGGACAGTAATGGGTGGTCTATTATCTGAAAAGTTCCTTGACACCAACTTGTCCATTCCGTTTGCTGGGCCTCCGTTAAACACTCCCTCCCTCCAAAAGTACAAACGGATGGTTGATGCCTGGGGAGGATGGAGTCTTTTTCAAACTCTTCTTCAGACACTCAAAAGAATTGCTTCTAAACATGGTGTCACAATCCCCAATGTTGCTGTGAAATACATACTAGATCAGCGAGGTGTGGCAGGATCGATGATAGGTGTTAGACTCGGGTTGTCAGAACATATCCAAGACTCTAATGCTGTGTTTTCACTTGCTCTTGATGAGGATGATATAAGCAGCATAGAAGAAGTCACAAAGAAAGGGAAGAATCTCCTTCAAGTTATTGGTGACTGCGGAGATGAATATAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

274

Amino Acids

30.84

Weight (kDa)

6.94

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	2 - 81	7.1e-21	Aldo/keto reductase family
Aldo_ket_red	PF00248	107 - 254	7.8e-26	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AciI	CCGC	1 cut(s)	804
AclWI	GGATC	1 cut(s)	664
AcsI	RAATTY	2 cut(s)	100, 178
AcuI	CTGAAG	2 cut(s)	59, 551
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	4 cut(s)	39, 142, 557, 788
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	3 cut(s)	170, 379, 388
AluI	AGCT	3 cut(s)	170, 379, 388
AlwI	GGATC	1 cut(s)	664
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	747
ApoI	RAATTY	2 cut(s)	100, 178
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
Asp700I	GAANNNNTTC	1 cut(s)	586
AspS9I	GGNCC	2 cut(s)	331, 482
AsuHPI	GGTGA	1 cut(s)	809
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	759
BccI	CCATC	2 cut(s)	517, 537
BciT130I	CCWGG	1 cut(s)	535
BfaI	CTAG	2 cut(s)	209, 635
BisI	GCNGC	1 cut(s)	748
BlsI	GCNGC	1 cut(s)	749
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	677
BmgT120I	GGNCC	2 cut(s)	331, 482
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	3 cut(s)	106, 299, 520
BoxI	GACNNNNGTC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	257
Bsa29I	ATCGAT	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	63, 534
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	535
BseCI	ATCGAT	1 cut(s)	659
BseDI	CCNNGG	2 cut(s)	63, 534
BseGI	GGATG	4 cut(s)	58, 528, 548, 742
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	759
BseYI	CCCAGC	1 cut(s)	479
BshFI	GGCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	659
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	35, 430
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	35, 430
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	677
Bsp143I	GATC	2 cut(s)	637, 656
BspACI	CCGC	1 cut(s)	804
BspANI	GGCC	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	659
BspPI	GGATC	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	63, 534
BssMI	GATC	2 cut(s)	637, 656
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	26, 166, 421
Bst6I	CTCTTC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	107
BstF5I	GGATG	4 cut(s)	58, 528, 548, 742
BstKTI	GATC	2 cut(s)	640, 659
BstMBI	GATC	2 cut(s)	637, 656
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 385
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	2 cut(s)	73, 355
BstPAI	GACNNNNGTC	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	533
BstV1I	GCAGC	1 cut(s)	759
Bsu15I	ATCGAT	1 cut(s)	659
BsuRI	GGCC	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	659
BtsCI	GGATG	4 cut(s)	58, 528, 548, 742
Cfr13I	GGNCC	2 cut(s)	331, 482
ClaI	ATCGAT	1 cut(s)	659
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	3 cut(s)	70, 352, 596
CviJI	RGCY	5 cut(s)	59, 170, 379, 388, 484
CviKI_1	RGCY	5 cut(s)	59, 170, 379, 388, 484
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	639, 658
DpnII	GATC	2 cut(s)	637, 656
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	59, 551
Eco88I	CYCGRG	1 cut(s)	677
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	73, 355, 599
FalI	AAGNNNNNCTT	2 cut(s)	571, 603
FaqI	GGGAC	2 cut(s)	35, 430
FatI	CATG	3 cut(s)	69, 351, 595
Fnu4HI	GCNGC	1 cut(s)	748
FokI	GGATG	4 cut(s)	65, 535, 555, 749
Fsp4HI	GCNGC	1 cut(s)	748
FspBI	CTAG	2 cut(s)	209, 635
GluI	GCNGC	1 cut(s)	748
GsaI	CCCAGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	73, 355, 599
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	6 cut(s)	220, 396, 547, 675, 701, 778
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	442, 570, 688
Hpy188III	TCNNGA	3 cut(s)	39, 274, 728
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	2 cut(s)	143, 794
HpyCH4III	ACNGT	3 cut(s)	26, 166, 421
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	5 cut(s)	119, 261, 290, 319, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 385
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	73, 355, 599
Kzo9I	GATC	2 cut(s)	637, 656
LpnPI	CCDG	8 cut(s)	224, 237, 314, 406, 465, 520, 547, 639
Lsp1109I	GCAGC	1 cut(s)	759
LweI	GCATC	3 cut(s)	106, 299, 520
MaeI	CTAG	2 cut(s)	209, 635
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	4 cut(s)	107, 601, 760, 797
MalI	GATC	2 cut(s)	639, 658
MboI	GATC	2 cut(s)	637, 656
MboII	GAAGA	4 cut(s)	554, 557, 767, 787
MluCI	AATT	5 cut(s)	100, 178, 267, 308, 582
MlyI	GAGTC	4 cut(s)	405, 556, 669, 695
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	8 cut(s)	12, 369, 495, 511, 515, 533, 638, 727
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	2 cut(s)	123, 491
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	2 cut(s)	258, 385
NdeII	GATC	2 cut(s)	637, 656
NlaIII	CATG	3 cut(s)	73, 355, 599
NmuCI	GTSAC	3 cut(s)	601, 760, 797
NspI	RCATGY	2 cut(s)	73, 355
PctI	GAATGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	220, 778
PkrI	GCNGC	1 cut(s)	749
PleI	GAGTC	4 cut(s)	404, 555, 669, 695
PpsI	GAGTC	4 cut(s)	404, 555, 669, 695
PshAI	GACNNNNGTC	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	533
PspEI	GGTNACC	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	533
PspPI	GGNCC	2 cut(s)	331, 482
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	2 cut(s)	123, 491
SatI	GCNGC	1 cut(s)	748
Sau3AI	GATC	2 cut(s)	637, 656
Sau96I	GGNCC	2 cut(s)	331, 482
SchI	GAGTC	4 cut(s)	405, 556, 669, 695
ScrFI	CCNGG	1 cut(s)	535
SfaNI	GCATC	3 cut(s)	106, 299, 520
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	5 cut(s)	100, 178, 267, 308, 582
SsiI	CCGC	1 cut(s)	804
SspMI	CTAG	2 cut(s)	209, 635
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	26, 166, 421
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	341, 659
TasI	AATT	5 cut(s)	100, 178, 267, 308, 582
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	2 cut(s)	220, 778
Tru1I	TTAA	2 cut(s)	123, 491
Tru9I	TTAA	2 cut(s)	123, 491
TseFI	GTSAC	3 cut(s)	601, 760, 797
TseI	GCWGC	1 cut(s)	747
Tsp45I	GTSAC	3 cut(s)	601, 760, 797
TspDTI	ATGAA	3 cut(s)	71, 301, 825
TspGWI	ACGGA	3 cut(s)	462, 477, 535
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	2 cut(s)	100, 178
XceI	RCATGY	2 cut(s)	73, 355
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	2 cut(s)	209, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.