Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002028.1

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Reverse (-)

67913 .. 70789

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002028.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atggttgagaactttgcgctagataagataaaatttgttgcatgtcaaattgatataggagaagaagaagaagagggcattgtgtgtgttgtattatttggaatggcagggttgttgggtcttcattctctaagcaaattcacgttttgttcgatcacaaaggcaagaactaagaggagtcagaaacacagttggaggccaattgggtgtgtgttaactgaagctaacagacgagttgtggttaagaatgggaaggatgcattagacatatgtagagttgtgaatgggatgtggcagaccagcgggggatggggccgaattgatagagacaatgctgttgatgctatgcttaaatatgctgatgctggactcactacatttgatatggcagatatatatggaccggctgaagatctatatggtatctttatcaatcgtgttcgtaaggagcgaccaccagaattcttggagaaggttagagggtgggattacgcaaattcgggttaccttgatgcacttaaacaccttacagatttgaaagacgaaggtaaaataaagaccgtagctttgacaaattttgataccgagagattacagataatcctagaaaatgagattcctgttgtaagcaatcaggtatattcttgccctaagtgcattctaattctcaagaaaatatgttttgcatctccttattgctaccaattcatagaaaagttccttgacaccaacttgtccattccgtttgctgggcctcctttaaacactccctccctccaaaagtacaaacggatggttgatgcctggggaggatggagtctttttcaaactcttcttcagacactcaaaagaattgcttctaaacatggtgtcacaatccccaatgttgctgtgaaatacatactagatcagcgaggtgtggcaggatcgatgataggtgttagactcgggttgtcagaacatatccaagactctaatgctgtgttttcacttgcgcttgatgaggatgatataagcagcatagaagaagtcacaaagaaagggaagaatctccttcaagttattggtgactgcggagatgaatataggcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

364

Amino Acids

40.82

Weight (kDa)

6.94

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	303, 1074
AclWI	GGATC	1 cut(s)	934
AcsI	RAATTY	5 cut(s)	32, 137, 461, 496, 574
AcuI	CTGAAG	3 cut(s)	240, 429, 821
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	1 cut(s)	749
AgsI	TTSAA	3 cut(s)	538, 827, 1058
AjnI	CCWGG	1 cut(s)	803
AluBI	AGCT	2 cut(s)	224, 566
AluI	AGCT	2 cut(s)	224, 566
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	934
Ama87I	CYCGRG	1 cut(s)	947
AoxI	GGCC	3 cut(s)	197, 313, 752
ApeKI	GCWGC	1 cut(s)	1017
ApoI	RAATTY	5 cut(s)	32, 137, 461, 496, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
Asp700I	GAANNNNTTC	1 cut(s)	856
AspLEI	GCGC	2 cut(s)	19, 997
AspS9I	GGNCC	3 cut(s)	313, 401, 752
AsuHPI	GGTGA	1 cut(s)	1079
AvaI	CYCGRG	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	1029
BccI	CCATC	3 cut(s)	303, 787, 807
BciT130I	CCWGG	1 cut(s)	805
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	3 cut(s)	20, 605, 905
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	1 cut(s)	1018
BlsI	GCNGC	1 cut(s)	1019
Bme1390I	CCNGG	1 cut(s)	805
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	947
BmgT120I	GGNCC	3 cut(s)	313, 401, 752
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	805
BmsI	GCATC	6 cut(s)	247, 331, 352, 502, 695, 790
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	653
Bsa29I	ATCGAT	1 cut(s)	929
BsaJI	CCNNGG	1 cut(s)	804
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
Bse118I	RCCGGY	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	805
BseCI	ATCGAT	1 cut(s)	929
BseDI	CCNNGG	1 cut(s)	804
BseGI	GGATG	6 cut(s)	262, 294, 314, 798, 818, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	1029
BseYI	CCCAGC	1 cut(s)	749
BshFI	GGCC	3 cut(s)	199, 315, 754
BshVI	ATCGAT	1 cut(s)	929
BsiHKCI	CYCGRG	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	657
BsnI	GGCC	3 cut(s)	199, 315, 754
BsoBI	CYCGRG	1 cut(s)	947
Bsp143I	GATC	4 cut(s)	153, 412, 907, 926
BspACI	CCGC	2 cut(s)	303, 1074
BspANI	GGCC	3 cut(s)	199, 315, 754
BspDI	ATCGAT	1 cut(s)	929
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	934
BsrFI	RCCGGY	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	804
BssMI	GATC	4 cut(s)	153, 412, 907, 926
Bst2UI	CCWGG	1 cut(s)	805
Bst4CI	ACNGT	2 cut(s)	191, 562
Bst6I	CTCTTC	2 cut(s)	66, 837
BstDEI	CTNAG	3 cut(s)	131, 171, 651
BstEII	GGTNACC	1 cut(s)	503
BstF5I	GGATG	6 cut(s)	262, 294, 314, 798, 818, 1012
BstHHI	GCGC	2 cut(s)	19, 997
BstKTI	GATC	4 cut(s)	156, 415, 910, 929
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	4 cut(s)	153, 412, 907, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 654
BstNI	CCWGG	1 cut(s)	805
BstNSI	RCATGY	1 cut(s)	45
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	803
BstV1I	GCAGC	1 cut(s)	1029
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
Bsu15I	ATCGAT	1 cut(s)	929
BsuRI	GGCC	3 cut(s)	199, 315, 754
BsuTUI	ATCGAT	1 cut(s)	929
BtsCI	GGATG	6 cut(s)	262, 294, 314, 798, 818, 1012
CfoI	GCGC	2 cut(s)	19, 997
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	3 cut(s)	313, 401, 752
ClaI	ATCGAT	1 cut(s)	929
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	2 cut(s)	42, 866
CviJI	RGCY	6 cut(s)	199, 224, 315, 407, 566, 754
CviKI_1	RGCY	6 cut(s)	199, 224, 315, 407, 566, 754
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	3 cut(s)	131, 171, 651
DpnI	GATC	4 cut(s)	155, 414, 909, 928
DpnII	GATC	4 cut(s)	153, 412, 907, 926
DraI	TTTAAA	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	66, 837
EarI	CTCTTC	2 cut(s)	66, 837
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	3 cut(s)	240, 429, 821
Eco88I	CYCGRG	1 cut(s)	947
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	803
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	2 cut(s)	45, 869
FalI	AAGNNNNNCTT	2 cut(s)	841, 873
FatI	CATG	2 cut(s)	41, 865
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	1018
FokI	GGATG	6 cut(s)	269, 301, 321, 805, 825, 1019
Fsp4HI	GCNGC	1 cut(s)	1018
FspBI	CTAG	3 cut(s)	20, 605, 905
GlaI	GCGC	2 cut(s)	18, 996
GluI	GCNGC	1 cut(s)	1018
GsaI	CCCAGC	1 cut(s)	753
HaeIII	GGCC	3 cut(s)	199, 315, 754
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	2 cut(s)	19, 997
Hin1II	CATG	2 cut(s)	45, 869
Hin6I	GCGC	2 cut(s)	17, 995
HinP1I	GCGC	2 cut(s)	17, 995
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	7 cut(s)	178, 369, 616, 817, 945, 971, 1048
HpaI	GTTAAC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	1079
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	183, 840, 958
Hpy188III	TCNNGA	1 cut(s)	670
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	4 cut(s)	247, 466, 539, 1064
HpyCH4III	ACNGT	2 cut(s)	191, 562
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	5 cut(s)	41, 260, 515, 657, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 654
HpyF3I	CTNAG	3 cut(s)	131, 171, 651
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	45, 869
HspAI	GCGC	2 cut(s)	17, 995
KspAI	GTTAAC	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	153, 412, 907, 926
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	1 cut(s)	1029
LweI	GCATC	6 cut(s)	247, 331, 352, 502, 695, 790
MaeI	CTAG	3 cut(s)	20, 605, 905
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	4 cut(s)	503, 871, 1030, 1067
MalI	GATC	4 cut(s)	155, 414, 909, 928
MboI	GATC	4 cut(s)	153, 412, 907, 926
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	412
MlyI	GAGTC	5 cut(s)	187, 363, 826, 939, 965
MmeI	TCCRAC	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	856
MseI	TTAA	5 cut(s)	215, 243, 351, 519, 761
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	805
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	805
MwoI	GCNNNNNNNGC	2 cut(s)	341, 654
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	4 cut(s)	153, 412, 907, 926
NlaIII	CATG	2 cut(s)	45, 869
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	3 cut(s)	871, 1030, 1067
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 448
PctI	GAATGC	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	856
PfeI	GAWTC	2 cut(s)	616, 1048
PkrI	GCNGC	1 cut(s)	1019
PleI	GAGTC	5 cut(s)	186, 363, 825, 939, 965
PpsI	GAGTC	5 cut(s)	186, 363, 825, 939, 965
Psp6I	CCWGG	1 cut(s)	803
PspEI	GGTNACC	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	1 cut(s)	803
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	3 cut(s)	313, 401, 752
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
SaqAI	TTAA	5 cut(s)	215, 243, 351, 519, 761
SatI	GCNGC	1 cut(s)	1018
Sau3AI	GATC	4 cut(s)	153, 412, 907, 926
Sau96I	GGNCC	3 cut(s)	313, 401, 752
SchI	GAGTC	5 cut(s)	187, 363, 826, 939, 965
ScrFI	CCNGG	1 cut(s)	805
SfaNI	GCATC	6 cut(s)	247, 331, 352, 502, 695, 790
SinI	GGWCC	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SsiI	CCGC	2 cut(s)	303, 1074
SspMI	CTAG	3 cut(s)	20, 605, 905
StyD4I	CCNGG	1 cut(s)	803
TaaI	ACNGT	2 cut(s)	191, 562
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	152, 929
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	2 cut(s)	616, 1048
Tru1I	TTAA	5 cut(s)	215, 243, 351, 519, 761
Tru9I	TTAA	5 cut(s)	215, 243, 351, 519, 761
TseFI	GTSAC	3 cut(s)	871, 1030, 1067
TseI	GCWGC	1 cut(s)	1017
Tsp45I	GTSAC	3 cut(s)	871, 1030, 1067
TspDTI	ATGAA	3 cut(s)	113, 697, 1095
TspGWI	ACGGA	2 cut(s)	732, 805
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	5 cut(s)	32, 137, 461, 496, 574
XceI	RCATGY	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	856
XspI	CTAG	3 cut(s)	20, 605, 905
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.