Rroxscaffold_1G00025640

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002803
Physical Location & Seq
Forward (+)
32145992 .. 32151699
5708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025640.1

Sequence Viewer

Length: 759 bp
ATGGCAACTCTCCATTTACACAACCTCCTGCCCAATACGACGTCGTTCAAATCACCATTTTCAACTCGGCCCAGACTGCGGTCCAACTCGGTCAGGTGCGGCGGCGAGGCAACTCGGGTGAGCAGCAGCTGCAGCGAGACCAACCGAGTCACAGTGAGTAACGGCAGCGATTCCTTGGACATATGCCGAGTCCTGAAGAACGGAATGTGGCAGACCAGCTGCGCCAGGGGCCGCATCGACCGAGACGACGCCGTTGAGGCCATGCTCCGCTACGCCGACGCCGGGCTCTCCACCTTCGACATGGCCGACCACTATGGACCGGCTGAGGATCTATATGGCATCTTTATCAACCGTGTTCGTCAGGAGCGACCACCAGAACTCTTGGAGAAAGTTAGAGGTCTCACGAAATGGGTGCCACCACCTGTTGAGATGACAAGCAGTTTTGTGAGGGACAGTATAAATGTTTCAAGAAAGAGAATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACGCAAATTCGGGTTACCTTGATGCACTTAAACACCTTACAGATTTGAAAGACGAAGGTAAAATAAAGACCGTAGCTTTTACAAATTTTGATACCGAGAGATTACAGATAATCCTAGAAAATGAGATTCCTGTTGTAAGCAATCAGGTCCAACATTCGATTGTTGACATGCGTCCTCAACAGCAAAATTTAATATCTTTGTTAGCTTACCGGAGTCAAACTTGTATGGGACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

252

Amino Acids

28.59

Weight (kDa)

7.01

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 67 - 239 2.5e-41 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 412
AciI CCGC 5 cut(s) 79, 99, 102, 232, 268
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 3 cut(s) 529, 607, 709
AcuI CTGAAG 2 cut(s) 215, 488
AcyI GRCGYC 3 cut(s) 41, 249, 279
AfiI CCNNNNNNNGG 2 cut(s) 78, 282
AgsI TTSAA 4 cut(s) 49, 63, 468, 571
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 129, 219, 599, 728
AluI AGCT 4 cut(s) 129, 219, 599, 728
Alw26I GTCTC 3 cut(s) 131, 237, 404
AlwI GGATC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 114
AoxI GGCC 4 cut(s) 68, 229, 258, 303
ApeKI GCWGC 6 cut(s) 123, 126, 129, 132, 165, 219
ApoI RAATTY 3 cut(s) 529, 607, 709
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 5 cut(s) 69, 81, 229, 317, 670
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 45, 130
AvaI CYCGRG 1 cut(s) 114
AvaII GGWCC 3 cut(s) 81, 317, 670
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 6 cut(s) 116, 135, 138, 144, 177, 206
BceAI ACGGC 2 cut(s) 178, 236
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 3 cut(s) 131, 237, 404
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 130
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 9 cut(s) 100, 103, 124, 127, 130, 133, 166, 220, 232
BlsI GCNGC 9 cut(s) 101, 104, 125, 128, 131, 134, 167, 221, 233
Bme1390I CCNGG 2 cut(s) 226, 283
Bme18I GGWCC 3 cut(s) 81, 317, 670
BmeT110I CYCGRG 1 cut(s) 114
BmgT120I GGNCC 5 cut(s) 69, 81, 229, 317, 670
BmiI GGNNCC 2 cut(s) 230, 414
BmrFI CCNGG 2 cut(s) 226, 283
BmsI GCATC 3 cut(s) 243, 348, 535
BoxI GACNNNNGTC 2 cut(s) 79, 693
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 283
BsaHI GRCGYC 3 cut(s) 41, 249, 279
BsaI GGTCTC 2 cut(s) 131, 404
BsaJI CCNNGG 3 cut(s) 174, 225, 492
BsaWI WCCGGW 1 cut(s) 732
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 282
Bse118I RCCGGY 1 cut(s) 319
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 3 cut(s) 174, 225, 492
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 78, 282
BseMII CTCAG 1 cut(s) 315
BseXI GCAGC 6 cut(s) 116, 135, 138, 144, 177, 206
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 70, 231, 260, 305
BshNI GGYRCC 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 114
BsiSI CCGG 3 cut(s) 282, 320, 733
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 2 cut(s) 78, 282
BsmAI GTCTC 3 cut(s) 131, 237, 404
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 4 cut(s) 70, 231, 260, 305
Bso31I GGTCTC 2 cut(s) 131, 404
BsoBI CYCGRG 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 5 cut(s) 79, 99, 102, 232, 268
BspANI GGCC 4 cut(s) 70, 231, 260, 305
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 230, 414
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 412
BspTNI GGTCTC 2 cut(s) 131, 404
BsrFI RCCGGY 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 174, 225, 492
BssMI GATC 1 cut(s) 328
BssNI GRCGYC 3 cut(s) 41, 249, 279
BssT1I CCWWGG 2 cut(s) 174, 492
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 5 cut(s) 154, 353, 455, 595, 756
BstACI GRCGYC 3 cut(s) 41, 249, 279
BstAPI GCANNNNNTGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 324
BstEII GGTNACC 1 cut(s) 536
BstF5I GGATG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 3 cut(s) 131, 237, 404
BstMBI GATC 1 cut(s) 328
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 5 cut(s) 76, 129, 132, 228, 257
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 502, 694
BstPAI GACNNNNGTC 2 cut(s) 79, 693
BstPI GGTNACC 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 224, 281
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 6 cut(s) 116, 135, 138, 144, 177, 206
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 4 cut(s) 70, 231, 260, 305
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 129
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 5 cut(s) 69, 81, 229, 317, 670
CseI GACGC 3 cut(s) 257, 287, 683
CviAII CATG 4 cut(s) 262, 301, 499, 691
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 174, 492
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 2 cut(s) 131, 404
Eco47I GGWCC 3 cut(s) 81, 317, 670
Eco57I CTGAAG 2 cut(s) 215, 488
Eco88I CYCGRG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 536
EcoO65I GGTNACC 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 174, 492
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 2 cut(s) 174, 492
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 4 cut(s) 265, 304, 502, 694
FaqI GGGAC 1 cut(s) 464
FatI CATG 4 cut(s) 261, 300, 498, 690
FauNDI CATATG 1 cut(s) 182
Fnu4HI GCNGC 9 cut(s) 100, 103, 124, 127, 130, 133, 166, 220, 232
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 9 cut(s) 100, 103, 124, 127, 130, 133, 166, 220, 232
FspBI CTAG 1 cut(s) 638
GlaI GCGC 1 cut(s) 223
GluI GCNGC 9 cut(s) 100, 103, 124, 127, 130, 133, 166, 220, 232
HaeIII GGCC 4 cut(s) 70, 231, 260, 305
HapII CCGG 3 cut(s) 282, 320, 733
HgaI GACGC 3 cut(s) 257, 287, 683
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 3 cut(s) 41, 249, 279
Hin1II CATG 4 cut(s) 265, 304, 502, 694
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 5 cut(s) 147, 170, 189, 649, 736
HpaII CCGG 3 cut(s) 282, 320, 733
HphI GGTGA 2 cut(s) 45, 130
Hpy166II GTNNAC 1 cut(s) 688
Hpy188III TCNNGA 4 cut(s) 193, 362, 403, 468
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 4 cut(s) 43, 46, 251, 281
HpyAV CCTTC 2 cut(s) 304, 572
HpyCH4III ACNGT 5 cut(s) 154, 353, 455, 595, 756
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 132, 548
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 129, 132, 228, 257
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 3 cut(s) 41, 249, 279
Hsp92II CATG 4 cut(s) 265, 304, 502, 694
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 270, 364
Lsp1109I GCAGC 6 cut(s) 116, 135, 138, 144, 177, 206
LweI GCATC 3 cut(s) 243, 348, 535
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 3 cut(s) 148, 158, 536
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 1 cut(s) 208
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 3 cut(s) 529, 607, 709
MlyI GAGTC 3 cut(s) 156, 198, 745
MmeI TCCRAC 2 cut(s) 108, 697
MnlI CCTC 7 cut(s) 35, 100, 250, 319, 389, 441, 708
MseI TTAA 2 cut(s) 552, 713
MspA1I CMGCKG 2 cut(s) 129, 219
MspI CCGG 3 cut(s) 282, 320, 733
MspR9I CCNGG 2 cut(s) 226, 283
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 76, 129, 132, 228, 257
NciI CCSGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 182
NdeII GATC 1 cut(s) 328
NlaIII CATG 4 cut(s) 265, 304, 502, 694
NlaIV GGNNCC 2 cut(s) 230, 414
NmeAIII GCCGAG 2 cut(s) 46, 212
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 2 cut(s) 502, 694
PcsI WCGNNNNNNNCGW 3 cut(s) 243, 303, 364
PfeI GAWTC 2 cut(s) 170, 649
PkrI GCNGC 9 cut(s) 101, 104, 125, 128, 131, 134, 167, 221, 233
PleI GAGTC 3 cut(s) 155, 197, 744
PpsI GAGTC 3 cut(s) 155, 197, 744
PshAI GACNNNNGTC 2 cut(s) 79, 693
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 536
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 230, 414
PspPI GGNCC 5 cut(s) 69, 81, 229, 317, 670
PstI CTGCAG 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 2 cut(s) 129, 219
SaqAI TTAA 2 cut(s) 552, 713
SatI GCNGC 9 cut(s) 100, 103, 124, 127, 130, 133, 166, 220, 232
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 5 cut(s) 69, 81, 229, 317, 670
SchI GAGTC 3 cut(s) 156, 198, 745
ScrFI CCNGG 2 cut(s) 226, 283
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 3 cut(s) 243, 348, 535
SfcI CTRYAG 1 cut(s) 130
SinI GGWCC 3 cut(s) 81, 317, 670
Sse9I AATT 3 cut(s) 529, 607, 709
SsiI CCGC 5 cut(s) 79, 99, 102, 232, 268
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 2 cut(s) 224, 281
StyI CCWWGG 2 cut(s) 174, 492
TaaI ACNGT 5 cut(s) 154, 353, 455, 595, 756
TaiI ACGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 237, 297, 680
TaqII GACCGA 2 cut(s) 79, 255
TasI AATT 3 cut(s) 529, 607, 709
TauI GCSGC 3 cut(s) 102, 105, 234
TfiI GAWTC 2 cut(s) 170, 649
Tru1I TTAA 2 cut(s) 552, 713
Tru9I TTAA 2 cut(s) 552, 713
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 6 cut(s) 123, 126, 129, 132, 165, 219
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 500
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 3 cut(s) 81, 317, 670
XapI RAATTY 3 cut(s) 529, 607, 709
XceI RCATGY 2 cut(s) 502, 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 638
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.