pycom03g09470

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002803
Physical Location & Seq
Reverse (-)
8008341 .. 8008956
616 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g09470.1

Sequence Viewer

Length: 486 bp
ATGGGTGGCCTATTATCGGAAAAGTTCCTCAATACCAACGTGAACATTACTTTTGCCGGGCCTCCGTTAAATACTCCCTCCCTCCAAAAGTATAAACGGGTATGGAGTCTTGAACTCGATCAATATGTTATGCGCATTTTATCTGTTTCGATCCATTCTTACTCCATTTGTAATGTGTGGCATATGGTCGATGCCTGGGGAGGTTGGAGCCTTTTCCAAGCTCTTCTTCAGACAATCAAGGGCATTGCTACTAAACACGGGGTCTCGATCGCCAACGTTGCTGTGAAATACGTTCTAGATCAGGCAGTGACAGGATCAATGGTAGGCGTTAGACTCGGGCTGTCGGAACACATCCAAGACTGCAACGCAGTGTTTTCGCTTACTCTTGACGAGGAAGATAGAAGCAGCATAAAGGAAGTCACAAAGAAAGGGAAGAATCTCCTTCAAGTGATCGGCGACTGTGGAGATGAATACAGGCGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

162

Amino Acids

17.94

Weight (kDa)

8.44

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 26 - 140 2.1e-11 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 134
AclI AACGTT 1 cut(s) 276
AclWI GGATC 2 cut(s) 145, 322
AcuI CTGAAG 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 113, 446
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 2 cut(s) 145, 322
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 2 cut(s) 7, 59
ApeKI GCWGC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 335
BbvI GCAGC 1 cut(s) 417
BcgI CGANNNNNNTGC 2 cut(s) 357, 391
BciT130I CCWGG 1 cut(s) 196
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 406
BlsI GCNGC 1 cut(s) 407
Bme1390I CCNGG 2 cut(s) 58, 196
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 58, 196
BmsI GCATC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 2 cut(s) 9, 61
BsiEI CGRYCG 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 2 cut(s) 9, 61
Bso31I GGTCTC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 335
Bsp143I GATC 6 cut(s) 118, 150, 267, 298, 314, 450
BspANI GGCC 2 cut(s) 9, 61
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 2 cut(s) 145, 322
BspQI GCTCTTC 1 cut(s) 228
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 6 cut(s) 118, 150, 267, 298, 314, 450
BssNI GRCGYC 1 cut(s) 478
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 478
BstF5I GGATG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 6 cut(s) 121, 153, 270, 301, 317, 453
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 6 cut(s) 118, 150, 267, 298, 314, 450
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 56, 194
BstV1I GCAGC 1 cut(s) 417
BsuRI GGCC 2 cut(s) 9, 61
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 2 cut(s) 312, 375
BtsIMutI CAGTG 2 cut(s) 312, 375
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 59
CseI GACGC 1 cut(s) 467
CviJI RGCY 5 cut(s) 9, 61, 210, 221, 340
CviKI_1 RGCY 5 cut(s) 9, 61, 210, 221, 340
DpnI GATC 6 cut(s) 120, 152, 269, 300, 316, 452
DpnII GATC 6 cut(s) 118, 150, 267, 298, 314, 450
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 194
FaiI YATR 7 cut(s) 93, 103, 126, 131, 183, 185, 410
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FauNDI CATATG 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 406
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 406
FspAI RTGCGCAY 1 cut(s) 134
FspBI CTAG 1 cut(s) 296
FspI TGCGCA 1 cut(s) 134
GlaI GCGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 406
HaeIII GGCC 2 cut(s) 9, 61
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 478
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 3 cut(s) 106, 333, 436
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 19, 231, 346
Hpy188III TCNNGA 4 cut(s) 110, 265, 296, 386
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 483
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 3 cut(s) 39, 276, 291
HpyCH4V TGCA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 3 cut(s) 39, 276, 291
Hsp92I GRCGYC 1 cut(s) 478
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 6 cut(s) 118, 150, 267, 298, 314, 450
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 6 cut(s) 70, 181, 208, 287, 297, 460
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 296
MaeII ACGT 3 cut(s) 39, 276, 291
MaeIII GTNAC 2 cut(s) 307, 418
MalI GATC 6 cut(s) 120, 152, 269, 300, 316, 452
MboI GATC 6 cut(s) 118, 150, 267, 298, 314, 450
MboII GAAGA 4 cut(s) 215, 218, 407, 445
MlyI GAGTC 2 cut(s) 115, 327
MmeI TCCRAC 2 cut(s) 185, 324
MnlI CCTC 6 cut(s) 38, 72, 88, 92, 194, 385
MseI TTAA 1 cut(s) 68
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 2 cut(s) 58, 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 58
NdeI CATATG 1 cut(s) 183
NdeII GATC 6 cut(s) 118, 150, 267, 298, 314, 450
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 2 cut(s) 307, 418
NsbI TGCGCA 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 1 cut(s) 407
Ple19I CGATCG 1 cut(s) 270
PleI GAGTC 2 cut(s) 114, 327
PpsI GAGTC 2 cut(s) 114, 327
Psp1406I AACGTT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 59
PvuI CGATCG 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 406
Sau3AI GATC 6 cut(s) 118, 150, 267, 298, 314, 450
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 2 cut(s) 115, 327
ScrFI CCNGG 2 cut(s) 58, 196
SetI ASST 5 cut(s) 42, 205, 223, 279, 294
SfaNI GCATC 1 cut(s) 181
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 56, 194
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 3 cut(s) 42, 279, 294
TaqI TCGA 5 cut(s) 117, 149, 189, 266, 481
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 2 cut(s) 312, 375
TseFI GTSAC 2 cut(s) 307, 418
TseI GCWGC 1 cut(s) 405
Tsp45I GTSAC 2 cut(s) 307, 418
TspDTI ATGAA 1 cut(s) 483
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 2 cut(s) 312, 375
XbaI TCTAGA 1 cut(s) 295
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.