Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Reverse (-)

14461059 .. 14463075

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1139700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCAACTTGTCATTTACACAGCGGCTTAGGTAACCTGACATCATTCAAATCCACAAACACCCAGGCTTCCACTCGGCGAGAGCTACCCAGACCCAGGCTCCGAGCCAACTCTGTGAGGTGCGGCGAGGCAACTCAGGTCACCTGCGAGACCCACCGAATCACGGTGAAGAACGGGAACGATTCCCAGGACATATGCCGAGTCCTTAACGGAATGTGGCAGACGAGCGGTGGCTGGGGAAGAATCGATCGAGACGACGCCGTGGAGGCCATGCTCCGCTACGCCGACGCTGGCCTTTCCACCTTCGACATGGTCGACCACTTTGTGGTTAAGAATGGCAAGGATTCGTTACACATTTGTCTGGTTGTTAATGGGATGTGGCAGACGAGCGGTAGCTGGGATCGAATTGATAGAGACAATGGAGTTGATGCTATGCTTAAATATGCTGATGCTGGAGTCACCACTTTCTTTTTGGACCAGCTGAAGAGCTATATGGAATCTTTATCAATCGTGTTCGTCAAGAGCGTCCACCAGAGTACTTGGAAAAGGTTAGAGGGTGAGTTGCTTCCACTTAATCACGTGAACATTCCTTTTGCCGGGCCTCCGTTAAATACTCCCTCCCTCCAAAAGTATAAACGGATGGTCGATGCCTGGAGAGGTTGGAGCCTTTTCCAAGCTCTTCTTCAGACACTCAAGGGCATTGCTACTAAACATGGGGTCTCGATCGCCAACGTTGCTGTGAAATACGTTCTAGATCAGGTAAAGTTCGACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

259

Amino Acids

28.92

Weight (kDa)

8.95

Isoelectric Point (pI)

24.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccBSI	CCGCTC	2 cut(s)	228, 390
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	5 cut(s)	24, 123, 228, 277, 390
AclI	AACGTT	1 cut(s)	732
AclWI	GGATC	1 cut(s)	408
AcuI	CTGAAG	2 cut(s)	503, 668
AcvI	CACGTG	1 cut(s)	580
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	4 cut(s)	96, 163, 325, 596
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	4 cut(s)	63, 95, 186, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	5 cut(s)	85, 396, 481, 489, 677
AluI	AGCT	5 cut(s)	85, 396, 481, 489, 677
Alw26I	GTCTC	4 cut(s)	143, 246, 408, 724
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	3 cut(s)	267, 292, 599
AspS9I	GGNCC	2 cut(s)	475, 599
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	4 cut(s)	133, 178, 451, 569
AvaII	GGWCC	1 cut(s)	475
BbrPI	CACGTG	1 cut(s)	580
BccI	CCATC	1 cut(s)	634
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	4 cut(s)	65, 97, 188, 652
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	4 cut(s)	143, 246, 408, 724
BfaI	CTAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	25, 124
BlsI	GCNGC	2 cut(s)	26, 125
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	5 cut(s)	65, 97, 188, 598, 652
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	475, 599
BmiI	GGNNCC	2 cut(s)	101, 665
BmrFI	CCNGG	5 cut(s)	65, 97, 188, 598, 652
BmsI	GCATC	3 cut(s)	418, 439, 637
BpmI	CTGGAG	2 cut(s)	474, 673
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	677
BpuMI	CCSGG	1 cut(s)	598
Bsa29I	ATCGAT	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	580
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	2 cut(s)	143, 724
BsaJI	CCNNGG	4 cut(s)	63, 95, 186, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 163, 325, 596
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	4 cut(s)	65, 97, 188, 652
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	4 cut(s)	63, 95, 186, 261
BseGI	GGATG	2 cut(s)	381, 645
BseLI	CCNNNNNNNGG	4 cut(s)	96, 163, 325, 596
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	1 cut(s)	149
BseYI	CCCAGC	2 cut(s)	234, 396
Bsh1285I	CGRYCG	2 cut(s)	250, 726
BshFI	GGCC	3 cut(s)	269, 294, 601
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	2 cut(s)	250, 726
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	4 cut(s)	96, 163, 325, 596
BsmAI	GTCTC	4 cut(s)	143, 246, 408, 724
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	3 cut(s)	269, 294, 601
Bso31I	GGTCTC	2 cut(s)	143, 724
Bsp143I	GATC	4 cut(s)	247, 400, 723, 754
BspACI	CCGC	5 cut(s)	24, 123, 228, 277, 390
BspANI	GGCC	3 cut(s)	269, 294, 601
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	101, 665
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	408
BspQI	GCTCTTC	2 cut(s)	479, 684
BspTNI	GGTCTC	2 cut(s)	143, 724
BsrBI	CCGCTC	2 cut(s)	228, 390
BsrDI	GCAATG	1 cut(s)	699
BssECI	CCNNGG	4 cut(s)	63, 95, 186, 261
BssMI	GATC	4 cut(s)	247, 400, 723, 754
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	4 cut(s)	65, 97, 188, 652
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	479, 684
BstACI	GRCGYC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	28, 135
BstDSI	CCRYGG	1 cut(s)	261
BstEII	GGTNACC	2 cut(s)	32, 139
BstF5I	GGATG	2 cut(s)	381, 645
BstKTI	GATC	4 cut(s)	250, 403, 726, 757
BstMAI	GTCTC	4 cut(s)	143, 246, 408, 724
BstMBI	GATC	4 cut(s)	247, 400, 723, 754
BstMCI	CGRYCG	2 cut(s)	250, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 734
BstNI	CCWGG	4 cut(s)	65, 97, 188, 652
BstPI	GGTNACC	2 cut(s)	32, 139
BstSCI	CCNGG	5 cut(s)	63, 95, 186, 596, 650
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	269, 294, 601
BsuTUI	ATCGAT	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	381, 645
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	475, 599
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	3 cut(s)	266, 296, 514
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	3 cut(s)	271, 310, 713
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	2 cut(s)	28, 135
DpnI	GATC	4 cut(s)	249, 402, 725, 756
DpnII	GATC	4 cut(s)	247, 400, 723, 754
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	479, 684
EarI	CTCTTC	2 cut(s)	479, 684
Eco31I	GGTCTC	2 cut(s)	143, 724
Eco47I	GGWCC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	503, 668
Eco72I	CACGTG	1 cut(s)	580
Eco91I	GGTNACC	2 cut(s)	32, 139
EcoO65I	GGTNACC	2 cut(s)	32, 139
EcoRII	CCWGG	4 cut(s)	63, 95, 186, 650
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	3 cut(s)	274, 313, 716
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FatI	CATG	3 cut(s)	270, 309, 712
FauNDI	CATATG	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	25, 124
FokI	GGATG	2 cut(s)	388, 652
Fsp4HI	GCNGC	2 cut(s)	25, 124
FspBI	CTAG	1 cut(s)	752
GluI	GCNGC	2 cut(s)	25, 124
GsaI	CCCAGC	2 cut(s)	238, 400
GsuI	CTGGAG	2 cut(s)	474, 673
HaeIII	GGCC	3 cut(s)	269, 294, 601
HapII	CCGG	1 cut(s)	597
HgaI	GACGC	3 cut(s)	266, 296, 514
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	274, 313, 716
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	7 cut(s)	159, 182, 201, 243, 344, 456, 497
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	4 cut(s)	133, 178, 451, 569
Hpy166II	GTNNAC	3 cut(s)	316, 529, 583
Hpy188I	TCNGA	2 cut(s)	104, 687
Hpy188III	TCNNGA	4 cut(s)	251, 520, 721, 752
Hpy8I	GTNNAC	3 cut(s)	316, 529, 583
Hpy99I	CGWCG	2 cut(s)	260, 290
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	3 cut(s)	579, 732, 747
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 734
HpyF3I	CTNAG	2 cut(s)	28, 135
HpySE526I	ACGT	3 cut(s)	579, 732, 747
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	274, 313, 716
Kzo9I	GATC	4 cut(s)	247, 400, 723, 754
LguI	GCTCTTC	2 cut(s)	479, 684
LmnI	GCTCC	3 cut(s)	105, 279, 663
LweI	GCATC	3 cut(s)	418, 439, 637
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	3 cut(s)	579, 732, 747
MaeIII	GTNAC	4 cut(s)	32, 139, 348, 457
MalI	GATC	4 cut(s)	249, 402, 725, 756
MbiI	CCGCTC	2 cut(s)	228, 390
MboI	GATC	4 cut(s)	247, 400, 723, 754
MboII	GAAGA	5 cut(s)	181, 252, 496, 671, 674
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	210, 465
MmeI	TCCRAC	1 cut(s)	641
MnlI	CCTC	8 cut(s)	111, 121, 259, 547, 612, 628, 632, 650
MseI	TTAA	6 cut(s)	207, 330, 369, 438, 573, 608
MspA1I	CMGCKG	2 cut(s)	24, 481
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	5 cut(s)	65, 97, 188, 598, 652
MvaI	CCWGG	4 cut(s)	65, 97, 188, 652
MwoI	GCNNNNNNNGC	2 cut(s)	266, 734
NciI	CCSGG	1 cut(s)	598
NdeI	CATATG	1 cut(s)	194
NdeII	GATC	4 cut(s)	247, 400, 723, 754
NlaIII	CATG	3 cut(s)	274, 313, 716
NlaIV	GGNNCC	2 cut(s)	101, 665
NmeAIII	GCCGAG	2 cut(s)	55, 224
NmuCI	GTSAC	2 cut(s)	139, 457
PaqCI	CACCTGC	1 cut(s)	152
PciSI	GCTCTTC	2 cut(s)	479, 684
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 312, 522
PfeI	GAWTC	5 cut(s)	159, 182, 243, 344, 497
PflFI	GACNNNGTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	26, 125
Ple19I	CGATCG	2 cut(s)	250, 726
PleI	GAGTC	2 cut(s)	209, 464
PmaCI	CACGTG	1 cut(s)	580
PmlI	CACGTG	1 cut(s)	580
PpsI	GAGTC	2 cut(s)	209, 464
Ppu21I	YACGTR	1 cut(s)	580
Psp1406I	AACGTT	1 cut(s)	732
Psp6I	CCWGG	4 cut(s)	63, 95, 186, 650
PspCI	CACGTG	1 cut(s)	580
PspEI	GGTNACC	2 cut(s)	32, 139
PspFI	CCCAGC	2 cut(s)	234, 396
PspGI	CCWGG	4 cut(s)	63, 95, 186, 650
PspN4I	GGNNCC	2 cut(s)	101, 665
PspPI	GGNCC	2 cut(s)	475, 599
PsyI	GACNNNGTC	1 cut(s)	311
PvuI	CGATCG	2 cut(s)	250, 726
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
SalI	GTCGAC	1 cut(s)	314
SapI	GCTCTTC	2 cut(s)	479, 684
SaqAI	TTAA	6 cut(s)	207, 330, 369, 438, 573, 608
SatI	GCNGC	2 cut(s)	25, 124
Sau3AI	GATC	4 cut(s)	247, 400, 723, 754
Sau96I	GGNCC	2 cut(s)	475, 599
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	2 cut(s)	210, 465
ScrFI	CCNGG	5 cut(s)	65, 97, 188, 598, 652
SfaNI	GCATC	3 cut(s)	418, 439, 637
SinI	GGWCC	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	5 cut(s)	24, 123, 228, 277, 390
SspMI	CTAG	1 cut(s)	752
StyD4I	CCNGG	5 cut(s)	63, 95, 186, 596, 650
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	3 cut(s)	582, 735, 750
TaqI	TCGA	8 cut(s)	246, 250, 306, 315, 403, 645, 722, 768
TasI	AATT	1 cut(s)	405
TatI	WGTACW	1 cut(s)	536
TauI	GCSGC	2 cut(s)	27, 126
TfiI	GAWTC	5 cut(s)	159, 182, 243, 344, 497
Tru1I	TTAA	6 cut(s)	207, 330, 369, 438, 573, 608
Tru9I	TTAA	6 cut(s)	207, 330, 369, 438, 573, 608
TseFI	GTSAC	2 cut(s)	139, 457
Tsp45I	GTSAC	2 cut(s)	139, 457
TspGWI	ACGGA	3 cut(s)	225, 594, 652
Tth111I	GACNNNGTC	1 cut(s)	311
Van91I	CCANNNNNTGG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	475
XbaI	TCTAGA	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 469
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	752
ZrmI	AGTACT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.