RchiOBHm_Chr5g0054671

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002803
Physical Location & Seq
Reverse (-)
57306274 .. 57309719
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33178

Sequence Viewer

Length: 1155 bp
ATGGCAGGGTTGTTGGGTCATCATTCTCTAAGCAAATTCACGTTTGGTTCGATCACAAAGGCAAGAACTAAGAGGAGTCAGAAACACAGTTGGAGGCCAATTGGGTGTGTGTTAAGTGAAGATAACAGACGAGTTGTGGTTAAGAATGGGAAGGATGCATTAGACATATGTAGAGTTGTGAATGGGATGTGGCAGACCAGCGGGGGATGGGGTCGAATTGATATAGAGACAATGCTGTTGATGCTATGCTTAAATATGCTGATGCTGGACTCACTACATTTGATATGGCAGATATATTTAATCTATGGACCGGCTGAAGATCTATATGGTATCTTTATCAATCGTGTTCGTAAGGAGCGACCACCAGAATTCTTGGAGAAGGTTAGAGGTCTCACAAAATGGGTGCCGCCACCAGTTAAGATGACAAGCAGTTTTGTGAGGGACAGTATAAATGTTTCAAGAAAGAGAATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACGCAAATTCGGGTTACCTTGATGCACTTAAACACCTTACAGATTTGAAAGACGAAGGTAAAATAAAGACCGTAGCTTTGACAAATTTTGATACCGAGAGATTACAGATAATCCTAGAAAATGAGATTCCTGTTGTAAGCAATCAGGTCCAACATTCGATTGTTGACATGCGTCCTCAACAGCAAATGGCAGAGCTTTGTCAGCTTACCGGAGTCAAACTTATAACGTATGGGACAGTAATGGGTGGTTTATTATCTGAAAAGTTCCTTGACACCAACTTGTCCATTCCGTTTGCTGGGCCTCCGTTAAACACTCCCTCCCTCCAAAAGTACAAACGGATGGTTGATGCCTGGGGAGGATGGAGTCTTTTTCAAACTCTTCTTCAGACACTCAAAAGAATTGCTTCTAAACATGGTGTCACAATCCCCAATGTTGCTGTGAAATACATACTAGATCAGCGAGGTGTGGCAGGATCGATGATAGGTGTTAGACTCGGGTTGTCAGAACATATCCAAGACTCTAATGCTGTGTTTTCACTTGCTCTTGATGAGGATGATATAAGCAGCATAGAAGAAGTCACAAAGAAAGGGAAGAATCTCCTTCAAGTTATTGGTGACTGCGGAGATGAATATAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

384

Amino Acids

43.4

Weight (kDa)

8.93

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 59 - 364 7.2e-60 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 737
AccB1I GGYRCC 1 cut(s) 403
AciI CCGC 3 cut(s) 201, 407, 1134
AclWI GGATC 1 cut(s) 994
AcsI RAATTY 4 cut(s) 35, 368, 520, 598
AcuI CTGAAG 3 cut(s) 336, 479, 881
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 1 cut(s) 809
AgsI TTSAA 4 cut(s) 459, 562, 887, 1118
AjnI CCWGG 1 cut(s) 863
AluBI AGCT 3 cut(s) 590, 709, 718
AluI AGCT 3 cut(s) 590, 709, 718
Alw26I GTCTC 2 cut(s) 221, 395
AlwI GGATC 1 cut(s) 994
Ama87I CYCGRG 1 cut(s) 1007
AoxI GGCC 2 cut(s) 95, 812
ApeKI GCWGC 1 cut(s) 1077
ApoI RAATTY 4 cut(s) 35, 368, 520, 598
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
Asp700I GAANNNNTTC 1 cut(s) 916
AspS9I GGNCC 3 cut(s) 308, 661, 812
AsuHPI GGTGA 1 cut(s) 1139
AvaI CYCGRG 1 cut(s) 1007
AvaII GGWCC 2 cut(s) 308, 661
BanI GGYRCC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 1089
BccI CCATC 3 cut(s) 201, 847, 867
BciT130I CCWGG 1 cut(s) 865
BcoDI GTCTC 2 cut(s) 221, 395
BfaI CTAG 2 cut(s) 629, 965
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 407, 1078
BlsI GCNGC 2 cut(s) 408, 1079
Bme1390I CCNGG 1 cut(s) 865
Bme18I GGWCC 2 cut(s) 308, 661
BmeT110I CYCGRG 1 cut(s) 1007
BmgT120I GGNCC 3 cut(s) 308, 661, 812
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 865
BmsI GCATC 5 cut(s) 145, 231, 252, 526, 850
BoxI GACNNNNGTC 1 cut(s) 684
Bsa29I ATCGAT 1 cut(s) 989
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 483, 864
BsaWI WCCGGW 1 cut(s) 722
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 865
BseCI ATCGAT 1 cut(s) 989
BseDI CCNNGG 2 cut(s) 483, 864
BseGI GGATG 7 cut(s) 160, 192, 212, 478, 858, 878, 1072
BseLI CCNNNNNNNGG 1 cut(s) 809
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 1089
BseYI CCCAGC 1 cut(s) 809
BshFI GGCC 2 cut(s) 97, 814
BshNI GGYRCC 1 cut(s) 403
BshVI ATCGAT 1 cut(s) 989
BsiHKCI CYCGRG 1 cut(s) 1007
BsiSI CCGG 2 cut(s) 311, 723
BslFI GGGAC 2 cut(s) 455, 760
BslI CCNNNNNNNGG 1 cut(s) 809
BsmAI GTCTC 2 cut(s) 221, 395
BsmFI GGGAC 2 cut(s) 455, 760
BsnI GGCC 2 cut(s) 97, 814
Bso31I GGTCTC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 1007
Bsp143I GATC 4 cut(s) 51, 319, 967, 986
BspACI CCGC 3 cut(s) 201, 407, 1134
BspANI GGCC 2 cut(s) 97, 814
BspDI ATCGAT 1 cut(s) 989
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 1 cut(s) 994
BspT107I GGYRCC 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 483, 864
BssMI GATC 4 cut(s) 51, 319, 967, 986
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 4 cut(s) 89, 446, 586, 751
Bst6I CTCTTC 1 cut(s) 897
BstDEI CTNAG 2 cut(s) 29, 69
BstEII GGTNACC 1 cut(s) 527
BstF5I GGATG 7 cut(s) 160, 192, 212, 478, 858, 878, 1072
BstKTI GATC 4 cut(s) 54, 322, 970, 989
BstMAI GTCTC 2 cut(s) 221, 395
BstMBI GATC 4 cut(s) 51, 319, 967, 986
BstMWI GCNNNNNNNGC 2 cut(s) 241, 715
BstNI CCWGG 1 cut(s) 865
BstNSI RCATGY 2 cut(s) 493, 685
BstPAI GACNNNNGTC 1 cut(s) 684
BstPI GGTNACC 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 863
BstV1I GCAGC 1 cut(s) 1089
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 989
BsuRI GGCC 2 cut(s) 97, 814
BsuTUI ATCGAT 1 cut(s) 989
BtsCI GGATG 7 cut(s) 160, 192, 212, 478, 858, 878, 1072
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 308, 661, 812
ClaI ATCGAT 1 cut(s) 989
CseI GACGC 1 cut(s) 674
Csp6I GTAC 1 cut(s) 844
CviAII CATG 3 cut(s) 490, 682, 926
CviJI RGCY 7 cut(s) 97, 314, 479, 590, 709, 718, 814
CviKI_1 RGCY 7 cut(s) 97, 314, 479, 590, 709, 718, 814
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 2 cut(s) 29, 69
DpnI GATC 4 cut(s) 53, 321, 969, 988
DpnII GATC 4 cut(s) 51, 319, 967, 986
Eam1104I CTCTTC 1 cut(s) 897
EarI CTCTTC 1 cut(s) 897
Eco130I CCWWGG 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 308, 661
Eco57I CTGAAG 3 cut(s) 336, 479, 881
Eco88I CYCGRG 1 cut(s) 1007
Eco91I GGTNACC 1 cut(s) 527
EcoO65I GGTNACC 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 863
EcoT14I CCWWGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 3 cut(s) 493, 685, 929
FalI AAGNNNNNCTT 2 cut(s) 901, 933
FaqI GGGAC 2 cut(s) 455, 760
FatI CATG 3 cut(s) 489, 681, 925
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 407, 1078
FokI GGATG 7 cut(s) 167, 199, 219, 485, 865, 885, 1079
Fsp4HI GCNGC 2 cut(s) 407, 1078
FspBI CTAG 2 cut(s) 629, 965
GluI GCNGC 2 cut(s) 407, 1078
GsaI CCCAGC 1 cut(s) 813
HaeIII GGCC 2 cut(s) 97, 814
HapII CCGG 2 cut(s) 311, 723
HgaI GACGC 1 cut(s) 674
Hin1II CATG 3 cut(s) 493, 685, 929
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HinfI GANTC 8 cut(s) 76, 269, 640, 726, 877, 1005, 1031, 1108
HpaII CCGG 2 cut(s) 311, 723
HphI GGTGA 1 cut(s) 1139
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 4 cut(s) 81, 772, 900, 1018
Hpy188III TCNNGA 2 cut(s) 459, 1058
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 4 cut(s) 145, 373, 563, 1124
HpyCH4III ACNGT 4 cut(s) 89, 446, 586, 751
HpyCH4IV ACGT 2 cut(s) 41, 740
HpyCH4V TGCA 2 cut(s) 158, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 715
HpyF3I CTNAG 2 cut(s) 29, 69
HpySE526I ACGT 2 cut(s) 41, 740
Hsp92II CATG 3 cut(s) 493, 685, 929
Kzo9I GATC 4 cut(s) 51, 319, 967, 986
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 1 cut(s) 1089
LweI GCATC 5 cut(s) 145, 231, 252, 526, 850
MaeI CTAG 2 cut(s) 629, 965
MaeII ACGT 2 cut(s) 41, 740
MaeIII GTNAC 4 cut(s) 527, 931, 1090, 1127
MalI GATC 4 cut(s) 53, 321, 969, 988
MboI GATC 4 cut(s) 51, 319, 967, 986
MboII GAAGA 6 cut(s) 131, 329, 884, 887, 1097, 1117
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 319
MluCI AATT 7 cut(s) 35, 99, 216, 368, 520, 598, 912
MlyI GAGTC 6 cut(s) 85, 263, 735, 886, 999, 1025
MmeI TCCRAC 2 cut(s) 71, 688
Mph1103I ATGCAT 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 916
MseI TTAA 7 cut(s) 113, 141, 251, 299, 417, 543, 821
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 2 cut(s) 311, 723
MspR9I CCNGG 1 cut(s) 865
MunI CAATTG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 865
MwoI GCNNNNNNNGC 2 cut(s) 241, 715
NdeI CATATG 1 cut(s) 167
NdeII GATC 4 cut(s) 51, 319, 967, 986
NlaIII CATG 3 cut(s) 493, 685, 929
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 3 cut(s) 931, 1090, 1127
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 2 cut(s) 493, 685
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 355
PdmI GAANNNNTTC 1 cut(s) 916
PfeI GAWTC 2 cut(s) 640, 1108
PkrI GCNGC 2 cut(s) 408, 1079
PleI GAGTC 6 cut(s) 84, 263, 734, 885, 999, 1025
PpsI GAGTC 6 cut(s) 84, 263, 734, 885, 999, 1025
PshAI GACNNNNGTC 1 cut(s) 684
PsiI TTATAA 1 cut(s) 737
Psp6I CCWGG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 3 cut(s) 308, 661, 812
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
SaqAI TTAA 7 cut(s) 113, 141, 251, 299, 417, 543, 821
SatI GCNGC 2 cut(s) 407, 1078
Sau3AI GATC 4 cut(s) 51, 319, 967, 986
Sau96I GGNCC 3 cut(s) 308, 661, 812
SchI GAGTC 6 cut(s) 85, 263, 735, 886, 999, 1025
ScrFI CCNGG 1 cut(s) 865
SfaNI GCATC 5 cut(s) 145, 231, 252, 526, 850
SinI GGWCC 2 cut(s) 308, 661
Sse9I AATT 7 cut(s) 35, 99, 216, 368, 520, 598, 912
SsiI CCGC 3 cut(s) 201, 407, 1134
SspMI CTAG 2 cut(s) 629, 965
StyD4I CCNGG 1 cut(s) 863
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 4 cut(s) 89, 446, 586, 751
TaiI ACGT 2 cut(s) 44, 743
TaqI TCGA 4 cut(s) 50, 214, 671, 989
TasI AATT 7 cut(s) 35, 99, 216, 368, 520, 598, 912
TatI WGTACW 1 cut(s) 843
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 2 cut(s) 640, 1108
Tru1I TTAA 7 cut(s) 113, 141, 251, 299, 417, 543, 821
Tru9I TTAA 7 cut(s) 113, 141, 251, 299, 417, 543, 821
TseFI GTSAC 3 cut(s) 931, 1090, 1127
TseI GCWGC 1 cut(s) 1077
Tsp45I GTSAC 3 cut(s) 931, 1090, 1127
TspDTI ATGAA 2 cut(s) 491, 1155
TspGWI ACGGA 3 cut(s) 792, 807, 865
VpaK11BI GGWCC 2 cut(s) 308, 661
XapI RAATTY 4 cut(s) 35, 368, 520, 598
XceI RCATGY 2 cut(s) 493, 685
XmnI GAANNNNTTC 1 cut(s) 916
XspI CTAG 2 cut(s) 629, 965
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.