Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002371.1

Orthogroup ID

OG0002803

Physical Location & Seq

Genomic Coordinates Forward (+)

59930 .. 60782

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002371.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggcaactctccatttacacaacctcctgcccaatccgacgtcgttcaaatcaccaatttcaaatcggcccagaccgcggtccaactctgtcaggttcggcggcgaggcaactcaggtgagcagcagcagcgagaccaaccgagtcacagtaagtaacggcaacgattccttggacatatgccgagtcctgaatggaatgtggcagaccagcggcgcctgggccgcatcgaccgagacgacgccgttgaggccatgctccgctacgccgacgccggcccctccaccttcgacatggccgaccactgtaactctctcaatttctgatttctacgttttactgtgccacgtggcacttctgttagataaacgtccacgtggagaagaagaagaagagggcattgtgtgtgttgtattatttggaatggcagggttgttgggtcttcattctctaagcaaattcacgtttggttcgatcacaaaggcaagaactaagaggagtcagaaacacagttggaggccaattgggtgtgtgttaactgaagataacagacgagttgtggttaagaatgggaaggatgcattagacatatgtagagttgtgaatgggatgtggcagaccagcgggggatggggtcgaattgatagagacaatgctgttgatgctatgcttaaatatgctgatgctggactcactacatttgatatggcagatatatgtatagcactcgattttcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

246

Amino Acids

26.86

Weight (kDa)

8.51

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27680
fragaria_vesca	FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620 FvH4_3g29620
malus_domestica	MD03G1139700.v1.1 MD11G1162100.v1.1
prunus_persica	Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1 Prupe.6G124700_v2.0.a1
pyrus_communis	pycom03g09470 pycom11g13190
rosa_chinensis	RchiOBHm_Chr5g0054671 RchiOBHm_Chr5g0054681 RchiOBHm_Chr5g0054781 RchiOBHm_Chr5g0054911
rosa_laevigata	RLG00000034944
rosa_multiflora	Rmu_sc0001552.1_g000054 Rmu_sc0002028.1_g000015 Rmu_sc0002371.1_g000026 Rmu_sc0004018.1_g000009 Rmu_sc0012706.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025640 Rroxscaffold_1G00025800 Rroxscaffold_1G00026090 Rroxscaffold_1G00026220
rosa_rugosa	Rorug05G0287800 Rorug05G0288300 Rorug05G0289300 Rorug05G0289400
rosa_samantha	Rh5AG358700 Rh5AG359100 Rh5BG369900 Rh5CG392500 Rh5DG383500
rosa_wichuraiana	Rw5G033810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	215
AccII	CGCG	1 cut(s)	79
AciI	CCGC	7 cut(s)	77, 79, 102, 213, 225, 261, 624
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	561
AcvI	CACGTG	2 cut(s)	349, 377
AcyI	GRCGYC	4 cut(s)	41, 216, 242, 272
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	49, 63
AjnI	CCWGG	1 cut(s)	218
Alw26I	GTCTC	3 cut(s)	128, 230, 642
AoxI	GGCC	6 cut(s)	68, 222, 251, 276, 296, 518
ApeKI	GCWGC	3 cut(s)	123, 126, 129
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	4 cut(s)	69, 81, 222, 277
AsuHPI	GGTGA	2 cut(s)	45, 130
AvaII	GGWCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	215
BbrPI	CACGTG	2 cut(s)	349, 377
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	3 cut(s)	135, 138, 141
BccI	CCATC	1 cut(s)	624
BceAI	ACGGC	2 cut(s)	175, 229
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	128, 230, 642
BfoI	RGCGCY	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	6 cut(s)	103, 124, 127, 130, 214, 225
BlsI	GCNGC	6 cut(s)	104, 125, 128, 131, 215, 226
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	4 cut(s)	69, 81, 222, 277
BmiI	GGNNCC	2 cut(s)	217, 279
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	4 cut(s)	236, 568, 652, 673
BoxI	GACNNNNGTC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	434
BsaAI	YACGTR	2 cut(s)	349, 377
BsaHI	GRCGYC	4 cut(s)	41, 216, 242, 272
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	77, 171, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	77, 171, 219
BseGI	GGATG	3 cut(s)	583, 615, 635
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	3 cut(s)	135, 138, 141
Bsh1236I	CGCG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	6 cut(s)	70, 224, 253, 278, 298, 520
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	3 cut(s)	128, 230, 642
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	6 cut(s)	70, 224, 253, 278, 298, 520
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	474
BspACI	CCGC	7 cut(s)	77, 79, 102, 213, 225, 261, 624
BspANI	GGCC	6 cut(s)	70, 224, 253, 278, 298, 520
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	217, 279
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	77, 171, 219
BssMI	GATC	1 cut(s)	474
BssNI	GRCGYC	4 cut(s)	41, 216, 242, 272
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	151, 307, 342, 512
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	4 cut(s)	41, 216, 242, 272
BstBAI	YACGTR	2 cut(s)	349, 377
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	114, 452, 492
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	583, 615, 635
BstFNI	CGCG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	477
BstMAI	GTCTC	3 cut(s)	128, 230, 642
BstMBI	GATC	1 cut(s)	474
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 129, 224, 250, 662
BstNI	CCWGG	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	135, 138, 141
BstV2I	GAAGAC	1 cut(s)	434
BsuRI	GGCC	6 cut(s)	70, 224, 253, 278, 298, 520
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	583, 615, 635
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	4 cut(s)	69, 81, 222, 277
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	2 cut(s)	250, 280
CviAII	CATG	2 cut(s)	255, 294
CviJI	RGCY	6 cut(s)	70, 224, 253, 278, 298, 520
CviKI_1	RGCY	6 cut(s)	70, 224, 253, 278, 298, 520
DdeI	CTNAG	3 cut(s)	114, 452, 492
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	561
Eco72I	CACGTG	2 cut(s)	349, 377
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	583
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	258, 297
FatI	CATG	2 cut(s)	254, 293
FauI	CCCGC	1 cut(s)	617
FauNDI	CATATG	2 cut(s)	179, 590
Fnu4HI	GCNGC	6 cut(s)	103, 124, 127, 130, 214, 225
FokI	GGATG	3 cut(s)	590, 622, 642
Fsp4HI	GCNGC	6 cut(s)	103, 124, 127, 130, 214, 225
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	6 cut(s)	103, 124, 127, 130, 214, 225
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	6 cut(s)	70, 224, 253, 278, 298, 520
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	2 cut(s)	250, 280
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	4 cut(s)	41, 216, 242, 272
Hin1II	CATG	2 cut(s)	258, 297
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	5 cut(s)	144, 167, 186, 499, 690
HpaI	GTTAAC	1 cut(s)	537
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	45, 130
Hpy166II	GTNNAC	2 cut(s)	374, 537
Hpy188I	TCNGA	3 cut(s)	39, 325, 504
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	374, 537
Hpy99I	CGWCG	4 cut(s)	43, 46, 244, 274
HpyAV	CCTTC	2 cut(s)	297, 568
HpyCH4III	ACNGT	4 cut(s)	151, 307, 342, 512
HpyCH4IV	ACGT	6 cut(s)	41, 333, 348, 370, 376, 464
HpyCH4V	TGCA	1 cut(s)	581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 129, 224, 250, 662
HpyF3I	CTNAG	3 cut(s)	114, 452, 492
HpySE526I	ACGT	6 cut(s)	41, 333, 348, 370, 376, 464
Hsp92I	GRCGYC	4 cut(s)	41, 216, 242, 272
Hsp92II	CATG	2 cut(s)	258, 297
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
KspAI	GTTAAC	1 cut(s)	537
KspI	CCGCGG	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	3 cut(s)	135, 138, 141
LweI	GCATC	4 cut(s)	236, 568, 652, 673
MaeII	ACGT	6 cut(s)	41, 333, 348, 370, 376, 464
MaeIII	GTNAC	3 cut(s)	145, 155, 307
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	6 cut(s)	395, 398, 401, 404, 434, 554
MfeI	CAATTG	1 cut(s)	522
MluCI	AATT	5 cut(s)	57, 318, 458, 522, 639
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	4 cut(s)	153, 195, 508, 684
MmeI	TCCRAC	3 cut(s)	62, 108, 494
MnlI	CCTC	7 cut(s)	35, 100, 243, 291, 388, 489, 510
Mph1103I	ATGCAT	1 cut(s)	583
MroNI	GCCGGC	1 cut(s)	274
MseI	TTAA	3 cut(s)	536, 564, 672
MspA1I	CMGCKG	3 cut(s)	79, 213, 624
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	5 cut(s)	76, 129, 224, 250, 662
NaeI	GCCGGC	1 cut(s)	276
NarI	GGCGCC	1 cut(s)	216
NdeI	CATATG	2 cut(s)	179, 590
NdeII	GATC	1 cut(s)	474
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	258, 297
NlaIV	GGNNCC	2 cut(s)	217, 279
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	3 cut(s)	236, 296, 470
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	104, 125, 128, 131, 215, 226
PleI	GAGTC	4 cut(s)	152, 194, 507, 684
PluTI	GGCGCC	1 cut(s)	219
PmaCI	CACGTG	2 cut(s)	349, 377
PmlI	CACGTG	2 cut(s)	349, 377
PpsI	GAGTC	4 cut(s)	152, 194, 507, 684
Ppu21I	YACGTR	2 cut(s)	349, 377
PshAI	GACNNNNGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	218
PspCI	CACGTG	2 cut(s)	349, 377
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	217, 279
PspPI	GGNCC	4 cut(s)	69, 81, 222, 277
SacII	CCGCGG	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	536, 564, 672
SatI	GCNGC	6 cut(s)	103, 124, 127, 130, 214, 225
Sau3AI	GATC	1 cut(s)	474
Sau96I	GGNCC	4 cut(s)	69, 81, 222, 277
SchI	GAGTC	4 cut(s)	153, 195, 508, 684
ScrFI	CCNGG	1 cut(s)	220
SfaNI	GCATC	4 cut(s)	236, 568, 652, 673
SfoI	GGCGCC	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	81
Sse9I	AATT	5 cut(s)	57, 318, 458, 522, 639
SsiI	CCGC	7 cut(s)	77, 79, 102, 213, 225, 261, 624
SspDI	GGCGCC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	4 cut(s)	151, 307, 342, 512
TaiI	ACGT	6 cut(s)	44, 336, 351, 373, 379, 467
TaqI	TCGA	5 cut(s)	230, 290, 473, 637, 729
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	5 cut(s)	57, 318, 458, 522, 639
TauI	GCSGC	3 cut(s)	105, 216, 227
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	536, 564, 672
Tru9I	TTAA	3 cut(s)	536, 564, 672
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	123, 126, 129
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.