Rroxscaffold_1G00025800

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002803
Physical Location & Seq
Forward (+)
32412286 .. 32416310
4025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025800.1

Sequence Viewer

Length: 474 bp
ATGCGTCCTCAACAGCAAATGGCAGAGCTTTGTCAGCTTACCGGAGTCAAACTTATAACCTATGGGACAGTAATGGGTGGTCTATTATCTGAAAAGTTCCTTGACACCAACTTGTCCATTCCGTTTGCTGGGCCTCCGTTAAACACTCCCTCCCTCCAAAAGTACAAACGGATGGTTGATGCCTGGGGAGGATGGAGTCTTTTTCAAACTCTTCTTCAGACACTCAAAAGAATTGCTTCTAAACATGGTGTCACAATCCCCAATGTTGCTGTGAAATACATACTAGATCAGCAAGGTGTGGCAGGATCGATGATAGGTGTTAGACTCGGGTTGTCAGAACATATCCAAGACTCTAATGCTGTGTTTTCACTTGCTCTTGATGAGGATGATATAAGCAGCATAGAAGGAGTCACAAAGAAAGGGAAGAATCTCCTTCAAGTTATTGGTGACTGCGGAGATGAATATAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

157

Amino Acids

17.19

Weight (kDa)

7.76

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 2 - 137 2.7e-22 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AciI CCGC 1 cut(s) 453
AclWI GGATC 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 2 cut(s) 206, 437
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 2 cut(s) 28, 37
AluI AGCT 2 cut(s) 28, 37
AlwI GGATC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 326
BbvI GCAGC 1 cut(s) 408
BccI CCATC 2 cut(s) 166, 186
BciT130I CCWGG 1 cut(s) 184
BfaI CTAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 3 cut(s) 177, 197, 391
BseLI CCNNNNNNNGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 408
BseYI CCCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 133
BsoBI CYCGRG 1 cut(s) 326
Bsp143I GATC 2 cut(s) 286, 305
BspACI CCGC 1 cut(s) 453
BspANI GGCC 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 308
BspPI GGATC 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 2 cut(s) 286, 305
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 216
BstF5I GGATG 3 cut(s) 177, 197, 391
BstKTI GATC 2 cut(s) 289, 308
BstMBI GATC 2 cut(s) 286, 305
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 408
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 1 cut(s) 133
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 3 cut(s) 177, 197, 391
Cfr13I GGNCC 1 cut(s) 131
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 245
CviJI RGCY 3 cut(s) 28, 37, 133
CviKI_1 RGCY 3 cut(s) 28, 37, 133
CviQI GTAC 1 cut(s) 163
DpnI GATC 2 cut(s) 288, 307
DpnII GATC 2 cut(s) 286, 305
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 182
FaeI CATG 1 cut(s) 248
FaiI YATR 8 cut(s) 56, 63, 246, 281, 342, 392, 401, 465
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 3 cut(s) 184, 204, 398
Fsp4HI GCNGC 1 cut(s) 397
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 397
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 42
Hin1II CATG 1 cut(s) 248
HinfI GANTC 6 cut(s) 45, 196, 324, 350, 408, 427
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 458
Hpy188I TCNGA 3 cut(s) 91, 219, 337
Hpy188III TCNNGA 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 398, 443
HpyCH4III ACNGT 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 2 cut(s) 286, 305
LpnPI CCDG 5 cut(s) 55, 114, 169, 196, 288
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 3 cut(s) 250, 409, 446
MalI GATC 2 cut(s) 288, 307
MboI GATC 2 cut(s) 286, 305
MboII GAAGA 3 cut(s) 203, 206, 436
MluCI AATT 1 cut(s) 231
MlyI GAGTC 5 cut(s) 54, 205, 318, 344, 417
MnlI CCTC 6 cut(s) 18, 144, 160, 164, 182, 376
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 1 cut(s) 140
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 2 cut(s) 286, 305
NlaIII CATG 1 cut(s) 248
NmuCI GTSAC 3 cut(s) 250, 409, 446
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 427
PkrI GCNGC 1 cut(s) 398
PleI GAGTC 5 cut(s) 53, 204, 318, 344, 416
PpsI GAGTC 5 cut(s) 53, 204, 318, 344, 416
PsiI TTATAA 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 182
PspPI GGNCC 1 cut(s) 131
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 2 cut(s) 286, 305
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 5 cut(s) 54, 205, 318, 344, 417
ScrFI CCNGG 1 cut(s) 184
SetI ASST 5 cut(s) 30, 39, 62, 298, 319
SfaNI GCATC 1 cut(s) 169
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 453
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 308
TasI AATT 1 cut(s) 231
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 3 cut(s) 250, 409, 446
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 3 cut(s) 250, 409, 446
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 3 cut(s) 111, 126, 184
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.