Rh5DG383500

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002803
Physical Location & Seq
Reverse (-)
58900391 .. 58904343
3953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG383500.1

Sequence Viewer

Length: 870 bp
ATGGCAACTCTTCACTTACACAATCTCCTGCCCAATTCGACGTCGTTCAACTCCAAAAACGCCCCATTTTCAACTCGGCGCAGACTGCGGTCCAACTCAGTCATGTGCGGCGGCGAGGCAACTCAGGTGAGCAGCAGCGAGACCAACCGAGTCACAGTGAGTAACGGCAACGATTCCTTGGACATATGCCGAGTCCTGAACGGAATGTGGCAGACCAGCGGCGCCTGGGGCCGAATCGACCGAGACGACGCCGTTGAGGCCATGCTCCGCTACGCCGACGCCGGCCTCTCCACCTTCGACATGGCCGACCACTATGGACCGGCTGAAGATCTATATGGTATCTTTATCAATCGTGTTCGTAAGGAGCGACCACCAGAATTCTTGGAGAAGGTTAGAGGTCTCACAAAATGGGTGCCGCCACCAGTTAAGATGACAAGCAGTTTTGTGAGGGACAGTATAAATGTTTCAAGAAAGAGAATGGATGTGGCTTCCTTGGACATGCTTCAGTTTCATTGGTGGGATTACGCAAATTCGGGTTACCTTGATGCACTTAAACACCTTACAGATTTGAAAAACGAAGGTAAAATAAAGACCGTAGCTTTGACAAATTTTGATACCGAGAGATTACAGATAATCCTAGAAAATGAGATTCCTGTTGTAAGCAATCAGGTCCAACATTCGATTGTTGACATGCGTCCTCAACAGCAAATGGCAGAGCTTTGTCAGCTTACCGGAGTCAAACTTATAACGTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCACACACACACACACCCAAACAGTTTCTAAAGTTATTAGCTCATTTGCATCCTTGGAAAGAATCTACGTGTCCCGAAAAGCTATCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

289

Amino Acids

32.55

Weight (kDa)

8.73

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 66 - 253 4.6e-48 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AatII GACGTC 1 cut(s) 44
AccB1I GGYRCC 2 cut(s) 221, 412
AciI CCGC 6 cut(s) 88, 108, 111, 219, 268, 416
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 3 cut(s) 377, 529, 607
AcuI CTGAAG 2 cut(s) 345, 488
AcyI GRCGYC 4 cut(s) 41, 222, 249, 279
AflIII ACRYGT 1 cut(s) 846
AgsI TTSAA 4 cut(s) 49, 72, 468, 571
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 5 cut(s) 599, 718, 727, 819, 860
AluI AGCT 5 cut(s) 599, 718, 727, 819, 860
Alw26I GTCTC 4 cut(s) 134, 237, 404, 756
AoxI GGCC 4 cut(s) 229, 258, 283, 303
ApeKI GCWGC 2 cut(s) 132, 135
ApoI RAATTY 3 cut(s) 377, 529, 607
ArsI GACNNNNNNTTYG 2 cut(s) 583, 615
AspLEI GCGC 2 cut(s) 81, 224
AspS9I GGNCC 4 cut(s) 90, 229, 317, 670
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 3 cut(s) 90, 317, 670
BanI GGYRCC 2 cut(s) 221, 412
BbvI GCAGC 2 cut(s) 144, 147
BceAI ACGGC 2 cut(s) 181, 236
BciT130I CCWGG 1 cut(s) 226
BcoDI GTCTC 4 cut(s) 134, 237, 404, 756
BfaI CTAG 1 cut(s) 638
BfoI RGCGCY 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 257
BglII AGATCT 1 cut(s) 328
BisI GCNGC 6 cut(s) 109, 112, 133, 136, 220, 416
BlsI GCNGC 6 cut(s) 110, 113, 134, 137, 221, 417
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 3 cut(s) 90, 317, 670
BmgT120I GGNCC 4 cut(s) 90, 229, 317, 670
BmiI GGNNCC 3 cut(s) 223, 230, 414
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 535, 836
BoxI GACNNNNGTC 2 cut(s) 88, 693
BsaAI YACGTR 1 cut(s) 847
BsaHI GRCGYC 4 cut(s) 41, 222, 249, 279
BsaI GGTCTC 2 cut(s) 134, 404
BsaJI CCNNGG 4 cut(s) 177, 225, 492, 831
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bse118I RCCGGY 2 cut(s) 281, 319
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 4 cut(s) 177, 225, 492, 831
BseGI GGATG 2 cut(s) 487, 827
BseMII CTCAG 2 cut(s) 111, 137
BseNI ACTGG 1 cut(s) 422
BseXI GCAGC 2 cut(s) 144, 147
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 4 cut(s) 231, 260, 285, 305
BshNI GGYRCC 2 cut(s) 221, 412
BsiEI CGRYCG 1 cut(s) 241
BsiSI CCGG 3 cut(s) 282, 320, 732
BslFI GGGAC 2 cut(s) 464, 835
BsmAI GTCTC 4 cut(s) 134, 237, 404, 756
BsmBI CGTCTC 2 cut(s) 237, 756
BsmFI GGGAC 2 cut(s) 464, 835
BsnI GGCC 4 cut(s) 231, 260, 285, 305
Bso31I GGTCTC 2 cut(s) 134, 404
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 6 cut(s) 88, 108, 111, 219, 268, 416
BspANI GGCC 4 cut(s) 231, 260, 285, 305
BspCNI CTCAG 2 cut(s) 110, 136
BspLI GGNNCC 3 cut(s) 223, 230, 414
BspT107I GGYRCC 2 cut(s) 221, 412
BspTNI GGTCTC 2 cut(s) 134, 404
BsrFI RCCGGY 2 cut(s) 281, 319
BsrI ACTGG 1 cut(s) 422
BssAI RCCGGY 2 cut(s) 281, 319
BssECI CCNNGG 4 cut(s) 177, 225, 492, 831
BssMI GATC 1 cut(s) 328
BssNI GRCGYC 4 cut(s) 41, 222, 249, 279
BssT1I CCWWGG 3 cut(s) 177, 492, 831
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 4 cut(s) 157, 455, 595, 802
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 4 cut(s) 41, 222, 249, 279
BstBAI YACGTR 1 cut(s) 847
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 97, 123
BstEII GGTNACC 1 cut(s) 536
BstF5I GGATG 2 cut(s) 487, 827
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 81, 224
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 4 cut(s) 134, 237, 404, 756
BstMBI GATC 1 cut(s) 328
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 4 cut(s) 85, 228, 257, 724
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 502, 694
BstPAI GACNNNNGTC 2 cut(s) 88, 693
BstPI GGTNACC 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 144, 147
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 4 cut(s) 231, 260, 285, 305
BtsCI GGATG 2 cut(s) 487, 827
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 283
CfoI GCGC 2 cut(s) 81, 224
Cfr10I RCCGGY 2 cut(s) 281, 319
Cfr13I GGNCC 4 cut(s) 90, 229, 317, 670
CseI GACGC 3 cut(s) 257, 287, 683
CviAII CATG 5 cut(s) 103, 262, 301, 499, 691
DdeI CTNAG 2 cut(s) 97, 123
DinI GGCGCC 1 cut(s) 223
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 3 cut(s) 177, 492, 831
Eco31I GGTCTC 2 cut(s) 134, 404
Eco47I GGWCC 3 cut(s) 90, 317, 670
Eco57I CTGAAG 2 cut(s) 345, 488
Eco91I GGTNACC 1 cut(s) 536
EcoO65I GGTNACC 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 3 cut(s) 177, 492, 831
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 3 cut(s) 177, 492, 831
Esp3I CGTCTC 2 cut(s) 237, 756
FaeI CATG 5 cut(s) 106, 265, 304, 502, 694
FaqI GGGAC 2 cut(s) 464, 835
FatI CATG 5 cut(s) 102, 261, 300, 498, 690
FauNDI CATATG 1 cut(s) 185
Fnu4HI GCNGC 6 cut(s) 109, 112, 133, 136, 220, 416
FokI GGATG 2 cut(s) 494, 814
Fsp4HI GCNGC 6 cut(s) 109, 112, 133, 136, 220, 416
FspBI CTAG 1 cut(s) 638
GlaI GCGC 2 cut(s) 80, 223
GluI GCNGC 6 cut(s) 109, 112, 133, 136, 220, 416
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 4 cut(s) 231, 260, 285, 305
HapII CCGG 3 cut(s) 282, 320, 732
HgaI GACGC 3 cut(s) 257, 287, 683
HhaI GCGC 2 cut(s) 81, 224
Hin1I GRCGYC 4 cut(s) 41, 222, 249, 279
Hin1II CATG 5 cut(s) 106, 265, 304, 502, 694
Hin6I GCGC 2 cut(s) 79, 222
HinP1I GCGC 2 cut(s) 79, 222
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 7 cut(s) 150, 173, 192, 234, 649, 735, 840
HpaII CCGG 3 cut(s) 282, 320, 732
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 1 cut(s) 869
Hpy188III TCNNGA 3 cut(s) 196, 468, 852
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 4 cut(s) 43, 46, 251, 281
HpyAV CCTTC 3 cut(s) 304, 382, 572
HpyCH4III ACNGT 4 cut(s) 157, 455, 595, 802
HpyCH4IV ACGT 3 cut(s) 41, 749, 846
HpyCH4V TGCA 2 cut(s) 548, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 228, 257, 724
HpyF3I CTNAG 2 cut(s) 97, 123
HpySE526I ACGT 3 cut(s) 41, 749, 846
Hsp92I GRCGYC 4 cut(s) 41, 222, 249, 279
Hsp92II CATG 5 cut(s) 106, 265, 304, 502, 694
HspAI GCGC 2 cut(s) 79, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 270, 364
Lsp1109I GCAGC 2 cut(s) 144, 147
LweI GCATC 2 cut(s) 535, 836
MaeI CTAG 1 cut(s) 638
MaeII ACGT 3 cut(s) 41, 749, 846
MaeIII GTNAC 3 cut(s) 151, 161, 536
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 1 cut(s) 338
MflI RGATCY 1 cut(s) 328
MluCI AATT 4 cut(s) 34, 377, 529, 607
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 3 cut(s) 159, 201, 744
MmeI TCCRAC 2 cut(s) 117, 697
MnlI CCTC 7 cut(s) 109, 250, 296, 389, 441, 708, 788
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 2 cut(s) 426, 552
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 3 cut(s) 282, 320, 732
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 85, 228, 257, 724
NaeI GCCGGC 1 cut(s) 283
NarI GGCGCC 1 cut(s) 222
NdeI CATATG 1 cut(s) 185
NdeII GATC 1 cut(s) 328
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 5 cut(s) 106, 265, 304, 502, 694
NlaIV GGNNCC 3 cut(s) 223, 230, 414
NmeAIII GCCGAG 2 cut(s) 55, 215
NmuCI GTSAC 1 cut(s) 151
NspI RCATGY 2 cut(s) 502, 694
PcsI WCGNNNNNNNCGW 3 cut(s) 243, 303, 364
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 4 cut(s) 173, 234, 649, 840
PkrI GCNGC 6 cut(s) 110, 113, 134, 137, 221, 417
PleI GAGTC 3 cut(s) 158, 200, 743
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 3 cut(s) 158, 200, 743
Ppu21I YACGTR 1 cut(s) 847
PshAI GACNNNNGTC 2 cut(s) 88, 693
PsiI TTATAA 1 cut(s) 746
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 1 cut(s) 536
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 223, 230, 414
PspPI GGNCC 4 cut(s) 90, 229, 317, 670
PsuI RGATCY 1 cut(s) 328
SaqAI TTAA 2 cut(s) 426, 552
SatI GCNGC 6 cut(s) 109, 112, 133, 136, 220, 416
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 4 cut(s) 90, 229, 317, 670
SchI GAGTC 3 cut(s) 159, 201, 744
ScrFI CCNGG 1 cut(s) 226
SfaNI GCATC 2 cut(s) 535, 836
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 3 cut(s) 90, 317, 670
Sse9I AATT 4 cut(s) 34, 377, 529, 607
SsiI CCGC 6 cut(s) 88, 108, 111, 219, 268, 416
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 3 cut(s) 177, 492, 831
TaaI ACNGT 4 cut(s) 157, 455, 595, 802
TaiI ACGT 3 cut(s) 44, 752, 849
TaqI TCGA 4 cut(s) 38, 237, 297, 680
TaqII GACCGA 1 cut(s) 255
TasI AATT 4 cut(s) 34, 377, 529, 607
TauI GCSGC 4 cut(s) 111, 114, 222, 418
TfiI GAWTC 4 cut(s) 173, 234, 649, 840
Tru1I TTAA 2 cut(s) 426, 552
Tru9I TTAA 2 cut(s) 426, 552
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 132, 135
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 500
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 162
VpaK11BI GGWCC 3 cut(s) 90, 317, 670
XapI RAATTY 3 cut(s) 377, 529, 607
XceI RCATGY 2 cut(s) 502, 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 638
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.