FvH4_3g31460
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002258
Physical Location & Seq
Forward (+)
25700688 .. 25705480
4793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31460.t2

Sequence Viewer

Length: 1836 bp
ATGGGAAGGAAGGAGATGACATCTTTGGAGTTCAAATCAGGAAAAGAGAAGAAAAAGCACAAGAAGAAAGGGAAGGAGGAAGTGAACAAGGATGAACTTGAAAGAAATTTTTCTGTGCTTGAAGTGGGGGACAAAATGGGCACGAACGTTGTGCAGACAGAAGATGACAATAGTGGCGGAAATCATATGATTAGTGGAGAAGGAGCCAATAAGAAAAAGAAAAGGAAGAGGGAAAAGGACGGGGATGAGATGGTTATAGAGAATATGATTGATAGAAAGGAGCTCTTTAATGAAGGGGAGAAATCTGTAGGGAGAACCATGGGGAAGCTTGACTCCACAGGTCATGTAAAGAAGAGAAAGAAAATCCTTGAGGATGTCAAAAAAGCTATGGCAACTGAATATGAAGATGTTGCAAAAATAACCAACAAGGGAGGAAATAAAAAGAAGAAAGATAAGAAACAGAAGAAAGAAAAGAAAGTGAAGAAAGAGAAGAGGGAAAACGTGGATGGTGAATTGGGACAGAATATCTCAAGTGATGGAATAGAAGCTGGAGTAGCAAGTAAACGTGTAGATGGGCATATTGTGGAGAAGGGTGGTTTATCACTTGAGAAGGGGAGGAAAGAGAAAAGAAAGCATGGAAAGAAATCAGGAACTGAATTGCAGGAGTCTGTGGCTGAAGATATGGGCACTGATTGTAACAGAAAATCAGAGGCTGTTGATGTAGAAAATAGTAAGAAAGGGAAGAAGTCCAAGTCGCAGAAACATGGTATTGTTGAGGGTTGTAATGAAGACAAGAAAAAGGCCAGGTCAAGTAAAAACAGCTTAAAAGCCCAAAAAGGCATTGGGGCTCCTGACAATTCTGAAGAATCAGCACCTAAAAAAGCACTGAAAAGAGTAAGTTTTTCTGATGATGTTGAGGTCTTCTCACCGTCTGATGGCCCAAGTGATGAGCATCAAGACCTTGTAAGAGGTAAACGGTTTTCAAAAGAAGAAGATAAGATTGTGGAAGAGGCTGTTTTAAGATACATAGACGAACATGCTTTAGGTGATGATGGTCTCGATATGGTTCTGCGTTGCAAGTCCCATCCTGAAGTCAAAAACCACCCAGAGTTGAAAACCTGTTGGAAGGACATTGGGGCAGCCCTACCATGGAGACCCTTTAAAAGTGTGTATTATAGAGCCCATATTTTGTTCGAACGAGCCGAGAAACGGAAATGGAGCCCGGAAGAATATGAAGAGGTAAGAAAGTTCCATAAAGATAAGGGAGCTGATTGGAGAACTTTGGGCGATAAGCTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAAACTGCCAAACATGAAGAAAGGACAGTGGTCCCAAGAGGAGTACGAGAATTTATTCGATTTGGTGAACAAGGATCTGCGTATGAAGGTTTTCGAAGAAAAGAAAACCAAGCATGGCATGCTTCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACGTTAGGCACAAGAACCAATGCTGTTTGCAGCTTGAAGTGGTATAATCAATTAACATCACCGTTGGTAAGCCAAAAGCTGTGGTCTGATATTGATGACTATCGGCTGCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGTATCAAATGGTCAAACATATTGGTCAGCATGCGCTGAAATCCTTTCCTGAGCAAGTGGAAGTTTTATCTAAACGTTATCTTGCCGATTTAATTGAAGCTAGAGAAATATATGCTAATAAACCTGCAGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

612

Amino Acids

70.03

Weight (kDa)

9.13

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 406 - 464 3.8e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1831
AciI CCGC 1 cut(s) 177
AclI AACGTT 3 cut(s) 147, 1496, 1774
AclWI GGATC 1 cut(s) 1419
AcsI RAATTY 3 cut(s) 106, 1308, 1387
AcuI CTGAAG 3 cut(s) 696, 882, 1110
AfaI GTAC 1 cut(s) 1382
AfiI CCNNNNNNNGG 3 cut(s) 935, 1149, 1209
AflIII ACRYGT 1 cut(s) 565
AgsI TTSAA 8 cut(s) 34, 101, 122, 984, 1114, 1531, 1640, 1796
AjnI CCWGG 2 cut(s) 803, 1675
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 1061, 1147
AlwI GGATC 1 cut(s) 1419
AlwNI CAGNNNCTG 2 cut(s) 653, 713
AoxI GGCC 3 cut(s) 801, 937, 1673
ApeKI GCWGC 3 cut(s) 1139, 1524, 1600
ApoI RAATTY 3 cut(s) 106, 1308, 1387
Asp700I GAANNNNTTC 3 cut(s) 109, 1391, 1427
AspLEI GCGC 2 cut(s) 1332, 1735
AspS9I GGNCC 2 cut(s) 938, 1368
AsuC2I CCSGG 1 cut(s) 1223
AsuHPI GGTGA 5 cut(s) 521, 918, 1058, 1414, 1545
AsuII TTCGAA 2 cut(s) 1194, 1431
AvaII GGWCC 1 cut(s) 1368
BaeGI GKGCMC 2 cut(s) 143, 689
BanII GRGCYC 4 cut(s) 285, 850, 1183, 1223
BbsI GAAGAC 2 cut(s) 795, 913
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 1151, 1536, 1587
BccI CCATC 8 cut(s) 244, 500, 530, 566, 929, 1046, 1092, 1692
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 2 cut(s) 805, 1677
BcnI CCSGG 1 cut(s) 1223
BcoDI GTCTC 2 cut(s) 1061, 1147
BfaI CTAG 1 cut(s) 1800
BfmI CTRYAG 2 cut(s) 306, 1824
BfuAI ACCTGC 1 cut(s) 1831
BisI GCNGC 3 cut(s) 1140, 1525, 1601
BlsI GCNGC 3 cut(s) 1141, 1526, 1602
Bme1390I CCNGG 3 cut(s) 805, 1223, 1677
Bme18I GGWCC 1 cut(s) 1368
BmgT120I GGNCC 2 cut(s) 938, 1368
BmiI GGNNCC 4 cut(s) 205, 849, 1220, 1370
BmrFI CCNGG 3 cut(s) 805, 1223, 1677
BmsI GCATC 4 cut(s) 961, 1312, 1597, 1615
BoxI GACNNNNGTC 1 cut(s) 1366
BpiI GAAGAC 2 cut(s) 795, 913
BplI GAGNNNNNCTC 2 cut(s) 908, 940
BpmI CTGGAG 2 cut(s) 570, 1698
Bpu10I CCTNAGC 1 cut(s) 1749
Bpu14I TTCGAA 2 cut(s) 1194, 1431
BpuEI CTTGAG 4 cut(s) 389, 514, 626, 1685
BpuMI CCSGG 1 cut(s) 1223
BsaBI GATNNNNATC 2 cut(s) 951, 1593
BsaI GGTCTC 2 cut(s) 1061, 1147
BsaJI CCNNGG 2 cut(s) 318, 1148
Bsc4I CCNNNNNNNGG 3 cut(s) 935, 1149, 1209
Bse8I GATNNNNATC 2 cut(s) 951, 1593
BseBI CCWGG 2 cut(s) 805, 1677
BseDI CCNNGG 2 cut(s) 318, 1148
BseGI GGATG 8 cut(s) 97, 250, 379, 511, 1084, 1327, 1630, 1660
BseJI GATNNNNATC 2 cut(s) 951, 1593
BseLI CCNNNNNNNGG 3 cut(s) 935, 1149, 1209
BseMII CTCAG 1 cut(s) 1740
BseRI GAGGAG 1 cut(s) 1391
BseSI GKGCMC 2 cut(s) 143, 689
BseXI GCAGC 3 cut(s) 1151, 1536, 1587
BseYI CCCAGC 1 cut(s) 1476
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 3 cut(s) 803, 939, 1675
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 1223
BslFI GGGAC 4 cut(s) 143, 531, 1066, 1354
BslI CCNNNNNNNGG 3 cut(s) 935, 1149, 1209
BsmAI GTCTC 2 cut(s) 1061, 1147
BsmFI GGGAC 4 cut(s) 143, 531, 1066, 1354
BsnI GGCC 3 cut(s) 803, 939, 1675
Bso31I GGTCTC 2 cut(s) 1061, 1147
Bsp119I TTCGAA 2 cut(s) 1194, 1431
Bsp1286I GDGCHC 6 cut(s) 143, 285, 689, 850, 1183, 1223
Bsp143I GATC 2 cut(s) 1411, 1657
Bsp19I CCATGG 2 cut(s) 318, 1148
BspACI CCGC 1 cut(s) 177
BspANI GGCC 3 cut(s) 803, 939, 1675
BspCNI CTCAG 1 cut(s) 1741
BspLI GGNNCC 4 cut(s) 205, 849, 1220, 1370
BspMAI CTGCAG 1 cut(s) 1828
BspMI ACCTGC 1 cut(s) 1831
BspPI GGATC 1 cut(s) 1419
BspT104I TTCGAA 2 cut(s) 1194, 1431
BspTNI GGTCTC 2 cut(s) 1061, 1147
BssECI CCNNGG 2 cut(s) 318, 1148
BssMI GATC 2 cut(s) 1411, 1657
BssT1I CCWWGG 2 cut(s) 318, 1148
Bst2UI CCWGG 2 cut(s) 805, 1677
Bst4CI ACNGT 4 cut(s) 930, 978, 1365, 1557
Bst6I CTCTTC 5 cut(s) 221, 347, 485, 1002, 1230
BstAPI GCANNNNNTGC 1 cut(s) 1456
BstBI TTCGAA 2 cut(s) 1194, 1431
BstC8I GCNNGC 3 cut(s) 1457, 1630, 1731
BstDEI CTNAG 1 cut(s) 1749
BstDSI CCRYGG 2 cut(s) 318, 1148
BstF5I GGATG 8 cut(s) 97, 250, 379, 511, 1084, 1327, 1630, 1660
BstHHI GCGC 2 cut(s) 1332, 1735
BstKTI GATC 2 cut(s) 1414, 1660
BstMAI GTCTC 2 cut(s) 1061, 1147
BstMBI GATC 2 cut(s) 1411, 1657
BstMWI GCNNNNNNNGC 2 cut(s) 554, 1456
BstNI CCWGG 2 cut(s) 805, 1677
BstNSI RCATGY 3 cut(s) 1040, 1459, 1733
BstPAI GACNNNNGTC 1 cut(s) 1366
BstSCI CCNGG 3 cut(s) 803, 1221, 1675
BstSFI CTRYAG 2 cut(s) 306, 1824
BstSLI GKGCMC 2 cut(s) 143, 689
BstV1I GCAGC 3 cut(s) 1151, 1536, 1587
BstV2I GAAGAC 2 cut(s) 795, 913
BstX2I RGATCY 1 cut(s) 1411
BstYI RGATCY 1 cut(s) 1411
BsuRI GGCC 3 cut(s) 803, 939, 1675
BtgI CCRYGG 2 cut(s) 318, 1148
BtgZI GCGATG 1 cut(s) 1711
BtsCI GGATG 8 cut(s) 97, 250, 379, 511, 1084, 1327, 1630, 1660
BtsIMutI CAGTG 4 cut(s) 687, 884, 1370, 1495
BveI ACCTGC 1 cut(s) 1831
Cac8I GCNNGC 3 cut(s) 1457, 1630, 1731
CaiI CAGNNNCTG 2 cut(s) 653, 713
CfoI GCGC 2 cut(s) 1332, 1735
Cfr13I GGNCC 2 cut(s) 938, 1368
Csp6I GTAC 1 cut(s) 1381
CspCI CAANNNNNGTGG 2 cut(s) 1556, 1591
CviQI GTAC 1 cut(s) 1381
DdeI CTNAG 1 cut(s) 1749
DpnI GATC 2 cut(s) 1413, 1659
DpnII GATC 2 cut(s) 1411, 1657
DraI TTTAAA 1 cut(s) 1162
Eam1104I CTCTTC 5 cut(s) 221, 347, 485, 1002, 1230
EarI CTCTTC 5 cut(s) 221, 347, 485, 1002, 1230
EciI GGCGGA 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 318, 1148
Eco147I AGGCCT 1 cut(s) 1675
Eco24I GRGCYC 4 cut(s) 285, 850, 1183, 1223
Eco31I GGTCTC 2 cut(s) 1061, 1147
Eco47I GGWCC 1 cut(s) 1368
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 3 cut(s) 696, 882, 1110
EcoICRI GAGCTC 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 1308
EcoRII CCWGG 2 cut(s) 803, 1675
EcoT14I CCWWGG 2 cut(s) 318, 1148
EcoT22I ATGCAT 1 cut(s) 1327
EcoT38I GRGCYC 4 cut(s) 285, 850, 1183, 1223
ErhI CCWWGG 2 cut(s) 318, 1148
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 4 cut(s) 143, 531, 1066, 1354
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 1140, 1525, 1601
FokI GGATG 8 cut(s) 104, 257, 386, 518, 1071, 1334, 1637, 1667
FriOI GRGCYC 4 cut(s) 285, 850, 1183, 1223
Fsp4HI GCNGC 3 cut(s) 1140, 1525, 1601
FspBI CTAG 1 cut(s) 1800
GlaI GCGC 2 cut(s) 1331, 1734
GluI GCNGC 3 cut(s) 1140, 1525, 1601
GsaI CCCAGC 1 cut(s) 1480
GsuI CTGGAG 2 cut(s) 570, 1698
HaeIII GGCC 3 cut(s) 803, 939, 1675
HapII CCGG 1 cut(s) 1223
HhaI GCGC 2 cut(s) 1332, 1735
Hin6I GCGC 2 cut(s) 1330, 1733
HinP1I GCGC 2 cut(s) 1330, 1733
HindIII AAGCTT 2 cut(s) 326, 1292
HinfI GANTC 3 cut(s) 332, 665, 866
HpaII CCGG 1 cut(s) 1223
HphI GGTGA 5 cut(s) 521, 918, 1058, 1414, 1545
Hpy166II GTNNAC 4 cut(s) 85, 563, 974, 1405
Hpy188I TCNGA 5 cut(s) 709, 862, 907, 934, 1582
Hpy188III TCNNGA 8 cut(s) 39, 648, 851, 956, 1058, 1088, 1463, 1748
Hpy8I GTNNAC 4 cut(s) 85, 563, 974, 1405
HpyAV CCTTC 8 cut(s) 4, 67, 194, 287, 583, 604, 1120, 1417
HpyCH4III ACNGT 4 cut(s) 930, 978, 1365, 1557
HpyCH4IV ACGT 5 cut(s) 147, 501, 565, 1496, 1774
HpyCH4V TGCA 7 cut(s) 154, 413, 661, 1077, 1325, 1524, 1826
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 1456
HpyF3I CTNAG 1 cut(s) 1749
HpySE526I ACGT 5 cut(s) 147, 501, 565, 1496, 1774
HspAI GCGC 2 cut(s) 1330, 1733
Kzo9I GATC 2 cut(s) 1411, 1657
LmnI GCTCC 5 cut(s) 203, 280, 853, 1218, 1265
Lsp1109I GCAGC 3 cut(s) 1151, 1536, 1587
LweI GCATC 4 cut(s) 961, 1312, 1597, 1615
MaeI CTAG 1 cut(s) 1800
MaeII ACGT 5 cut(s) 147, 501, 565, 1496, 1774
MaeIII GTNAC 1 cut(s) 695
MalI GATC 2 cut(s) 1413, 1659
MboI GATC 2 cut(s) 1411, 1657
MflI RGATCY 1 cut(s) 1411
MhlI GDGCHC 6 cut(s) 143, 285, 689, 850, 1183, 1223
MluCI AATT 8 cut(s) 106, 512, 656, 856, 1308, 1387, 1544, 1791
MlyI GAGTC 2 cut(s) 326, 674
MmeI TCCRAC 1 cut(s) 1103
Mph1103I ATGCAT 1 cut(s) 1327
MroXI GAANNNNTTC 3 cut(s) 109, 1391, 1427
MseI TTAA 6 cut(s) 288, 824, 1019, 1161, 1547, 1790
MspI CCGG 1 cut(s) 1223
MspR9I CCNGG 3 cut(s) 805, 1223, 1677
MvaI CCWGG 2 cut(s) 805, 1677
MwoI GCNNNNNNNGC 2 cut(s) 554, 1456
NciI CCSGG 1 cut(s) 1223
NcoI CCATGG 2 cut(s) 318, 1148
NdeI CATATG 1 cut(s) 186
NdeII GATC 2 cut(s) 1411, 1657
NlaIV GGNNCC 4 cut(s) 205, 849, 1220, 1370
NmeAIII GCCGAG 1 cut(s) 1228
NsiI ATGCAT 1 cut(s) 1327
NspI RCATGY 3 cut(s) 1040, 1459, 1733
NspV TTCGAA 2 cut(s) 1194, 1431
PaeI GCATGC 2 cut(s) 1459, 1733
PceI AGGCCT 1 cut(s) 1675
PcsI WCGNNNNNNNCGW 1 cut(s) 1200
PdmI GAANNNNTTC 3 cut(s) 109, 1391, 1427
PfeI GAWTC 1 cut(s) 866
PkrI GCNGC 3 cut(s) 1141, 1526, 1602
PleI GAGTC 2 cut(s) 326, 673
PpsI GAGTC 2 cut(s) 326, 673
PshAI GACNNNNGTC 1 cut(s) 1366
Psp124BI GAGCTC 1 cut(s) 285
Psp1406I AACGTT 3 cut(s) 147, 1496, 1774
Psp6I CCWGG 2 cut(s) 803, 1675
PspFI CCCAGC 1 cut(s) 1476
PspGI CCWGG 2 cut(s) 803, 1675
PspN4I GGNNCC 4 cut(s) 205, 849, 1220, 1370
PspPI GGNCC 2 cut(s) 938, 1368
PstI CTGCAG 1 cut(s) 1828
PstNI CAGNNNCTG 2 cut(s) 653, 713
PsuI RGATCY 1 cut(s) 1411
RsaI GTAC 1 cut(s) 1382
RsaNI GTAC 1 cut(s) 1381
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 6 cut(s) 288, 824, 1019, 1161, 1547, 1790
SatI GCNGC 3 cut(s) 1140, 1525, 1601
Sau3AI GATC 2 cut(s) 1411, 1657
Sau96I GGNCC 2 cut(s) 938, 1368
SchI GAGTC 2 cut(s) 326, 674
ScrFI CCNGG 3 cut(s) 805, 1223, 1677
SduI GDGCHC 6 cut(s) 143, 285, 689, 850, 1183, 1223
SfaNI GCATC 4 cut(s) 961, 1312, 1597, 1615
SfcI CTRYAG 2 cut(s) 306, 1824
SfuI TTCGAA 2 cut(s) 1194, 1431
SinI GGWCC 1 cut(s) 1368
SmlI CTYRAG 4 cut(s) 368, 529, 605, 1664
SmoI CTYRAG 4 cut(s) 368, 529, 605, 1664
SphI GCATGC 2 cut(s) 1459, 1733
Sse9I AATT 8 cut(s) 106, 512, 656, 856, 1308, 1387, 1544, 1791
SseBI AGGCCT 1 cut(s) 1675
SsiI CCGC 1 cut(s) 177
SspI AATATT 1 cut(s) 1471
SspMI CTAG 1 cut(s) 1800
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 1675
StyD4I CCNGG 3 cut(s) 803, 1221, 1675
StyI CCWWGG 2 cut(s) 318, 1148
TaaI ACNGT 4 cut(s) 930, 978, 1365, 1557
TaiI ACGT 5 cut(s) 150, 504, 568, 1499, 1777
TaqI TCGA 5 cut(s) 1059, 1194, 1395, 1431, 1462
TasI AATT 8 cut(s) 106, 512, 656, 856, 1308, 1387, 1544, 1791
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 6 cut(s) 288, 824, 1019, 1161, 1547, 1790
Tru9I TTAA 6 cut(s) 288, 824, 1019, 1161, 1547, 1790
TscAI CASTG 4 cut(s) 694, 891, 1370, 1495
TseI GCWGC 3 cut(s) 1139, 1524, 1600
TspDTI ATGAA 8 cut(s) 108, 306, 417, 801, 1248, 1301, 1367, 1436
TspGWI ACGGA 1 cut(s) 1225
TspRI CASTG 4 cut(s) 694, 891, 1370, 1495
VpaK11BI GGWCC 1 cut(s) 1368
XapI RAATTY 3 cut(s) 106, 1308, 1387
XceI RCATGY 3 cut(s) 1040, 1459, 1733
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XmnI GAANNNNTTC 3 cut(s) 109, 1391, 1427
XspI CTAG 1 cut(s) 1800
Zsp2I ATGCAT 1 cut(s) 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.