Rh5DG405800
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002258
Physical Location & Seq
Forward (+)
64164965 .. 64168407
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG405800.1

Sequence Viewer

Length: 1908 bp
ATGGGAAGGAAGGAGAGGACACCGTTGGAGTTTGAATCAGGAAAAGAGAAGAAAAAGAACAAGGAGAAAAGGAAGGAGAAAGCGAAGAAGGATGAACTTGAAAGAAATTCTTCCGTGCTTGAAGTCTGTAGGGACAAAATGGGCAAGGAAGTTGAGGGGCTGAAATATGACAAGACTGGAAATCATATGAATAGTGGAGAAGAAGCCAATAAGAAAAAGAAAAGGAGGAGGGAAAAGGAGGGGGATGATATGGTAATAGATATGATTAATAAAAAGGAGCTCATAAATGATGGGGAGAAATCCGTTGGGAAAACTGTGGAGAAAGTTGACTCTACAGGTAGTGTAAAGAAGACACAAAAAATTCTTGAGGATGGAAAAGTAGGTGTGGCAACTGAGTATGGAGATGTTGCACAAATAAACAACAAGGGAGGAAATAAAAAGAAAAAAGAGAAGAAACGGAAGAGGGAAAAAGCGGGTGGTGAATTGGTACAGAATATCACAAGTGATGGAATGGAGGCTGGAGTCGCAAGTAAGCATTTAGATGGGCATATTGTGTCTGAAAATCGTACTGGGAGCAGTGAAACGTGCATCAGAAACATAAAGGCTGTTGATGTAGATGGTGAGAAAACGAGGAAGAAGAAGGCCAAGGCCAAGGCAGAGACCCTTGTTAATGGAGAAGTTAGCAGCAAAAATGTGGAGGTTGTTAATGTAGAAGATGGTAAAAAAAGAAAGAAGGCCAAGTCAGAGAAACATGTTGTAGAAGATTGCAACAGAAAATCAGAGGCTGTTAATGTAGGAAATAGTAAGAAAAGGAAGAAGTCCAAGTCGGAGAAACGTGGTATTGCGGAGGTTTGCAATGAAGACAAGAAAAAGGCCAGTTCAAGTAAAGGCAGCTTAATAGCCCCAAAAAGCATTGGAGCTCCTGACAATTCTGAAAAATCAACCCCTAAAAAAGCATCAAAAAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACCGTCTGATGGCCCAAATGATGAGCATGAAGACCTTGTAAGAGGTAAGCGGTTTTCAGAAGAAGAAGACAAGATTGTGAAAGAGGCTGTTTTAAGATACATAGAGGAACATGCTTTAGGGGACGATGGCCTCAACATGGTTCTGCGTTGTAAGTCCCACCCTGAAGTCAAAAACCACCCAGAATTGAAAAATTGTTGGAAGGATATTGGGGCAGCCTTACCATGGAGGCCCTTTAAGAGTGTATATTATAGAGCCCATATTTTGTTTGAACGAGCCGAGAAACGTATTTGGACCCCGGAAGAGTACGAAGAGGTAAAGAAGTTCCATAAAGATCGGGGAGCTGATTGGAGAACTTTGGGCGATAAGCTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAGGCTGCCAAATCAGAAGAAAGGACGCTGGTCCCAAGAGGAGTACGAGACTTTATTTGATTTAGTGAACATGGATCTGCGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACGTTGGGCACTAGAACCAATGCTGTTTGCAGCATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGGCTGCTTGATTCTCTTAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCATCATGGGATCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACGTTATCTTGCCGATTTAATTGAAGCAAGGGAAATCTATGCTAGTAAACCTGCAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

635

Amino Acids

72.56

Weight (kDa)

9.24

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 430 - 488 1.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1903
AciI CCGC 3 cut(s) 473, 845, 1048
AclI AACGTT 2 cut(s) 1568, 1846
AclWI GGATC 2 cut(s) 1491, 1814
AcsI RAATTY 3 cut(s) 106, 360, 1380
AcuI CTGAAG 1 cut(s) 1182
AfaI GTAC 4 cut(s) 489, 568, 1304, 1454
AfiI CCNNNNNNNGG 3 cut(s) 1007, 1135, 1221
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 9 cut(s) 35, 101, 122, 882, 1186, 1268, 1505, 1712, 1868
AjnI CCWGG 1 cut(s) 1747
AluBI AGCT 7 cut(s) 280, 894, 920, 1340, 1366, 1645, 1692
AluI AGCT 7 cut(s) 280, 894, 920, 1340, 1366, 1645, 1692
Alw21I GWGCWC 2 cut(s) 282, 922
Alw26I GTCTC 2 cut(s) 653, 1451
AlwI GGATC 2 cut(s) 1491, 1814
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 8 cut(s) 642, 648, 735, 873, 1009, 1126, 1226, 1745
ApeKI GCWGC 7 cut(s) 684, 891, 1211, 1414, 1531, 1596, 1672
ApoI RAATTY 3 cut(s) 106, 360, 1380
AseI ATTAAT 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 1404
AspS9I GGNCC 4 cut(s) 1010, 1227, 1290, 1440
AsuC2I CCSGG 1 cut(s) 1295
AsuHPI GGTGA 4 cut(s) 491, 632, 990, 1617
AvaII GGWCC 2 cut(s) 1290, 1440
BaeGI GKGCMC 1 cut(s) 1577
BanII GRGCYC 3 cut(s) 282, 922, 1255
BbsI GAAGAC 5 cut(s) 356, 867, 985, 1035, 1071
Bbv12I GWGCWC 2 cut(s) 282, 922
BbvI GCAGC 7 cut(s) 696, 903, 1223, 1401, 1518, 1608, 1659
BccI CCATC 9 cut(s) 284, 365, 500, 536, 611, 710, 1001, 1118, 1764
BciT130I CCWGG 1 cut(s) 1749
BcnI CCSGG 1 cut(s) 1295
BcoDI GTCTC 2 cut(s) 653, 1451
BfaI CTAG 2 cut(s) 1578, 1887
BfmI CTRYAG 3 cut(s) 127, 333, 1896
BfuAI ACCTGC 1 cut(s) 1903
BisI GCNGC 7 cut(s) 685, 892, 1212, 1415, 1532, 1597, 1673
BlsI GCNGC 7 cut(s) 686, 893, 1213, 1416, 1533, 1598, 1674
Bme1390I CCNGG 2 cut(s) 1295, 1749
Bme18I GGWCC 2 cut(s) 1290, 1440
BmgT120I GGNCC 4 cut(s) 1010, 1227, 1290, 1440
BmiI GGNNCC 2 cut(s) 1292, 1442
BmrFI CCNGG 2 cut(s) 1295, 1749
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 5 cut(s) 597, 965, 1384, 1687, 1783
BmuI ACTGGG 1 cut(s) 579
BoxI GACNNNNGTC 1 cut(s) 1438
BpiI GAAGAC 5 cut(s) 356, 867, 985, 1035, 1071
BplI GAGNNNNNCTC 2 cut(s) 980, 1012
BpmI CTGGAG 2 cut(s) 540, 1770
BpuEI CTTGAG 2 cut(s) 386, 1757
BpuMI CCSGG 1 cut(s) 1295
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 4 cut(s) 645, 651, 1220, 1293
Bsc4I CCNNNNNNNGG 3 cut(s) 1007, 1135, 1221
Bse1I ACTGG 3 cut(s) 181, 574, 876
Bse3DI GCAATG 1 cut(s) 862
BseBI CCWGG 1 cut(s) 1749
BseDI CCNNGG 4 cut(s) 645, 651, 1220, 1293
BseGI GGATG 6 cut(s) 97, 250, 376, 1399, 1702, 1732
BseLI CCNNNNNNNGG 3 cut(s) 1007, 1135, 1221
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 3 cut(s) 181, 574, 876
BseRI GAGGAG 2 cut(s) 241, 1463
BseSI GKGCMC 1 cut(s) 1577
BseXI GCAGC 7 cut(s) 696, 903, 1223, 1401, 1518, 1608, 1659
BseYI CCCAGC 1 cut(s) 1548
BshFI GGCC 8 cut(s) 644, 650, 737, 875, 1011, 1128, 1228, 1747
BsiHKAI GWGCWC 2 cut(s) 282, 922
BsiSI CCGG 1 cut(s) 1295
BslFI GGGAC 4 cut(s) 146, 1133, 1138, 1426
BslI CCNNNNNNNGG 3 cut(s) 1007, 1135, 1221
BsmAI GTCTC 2 cut(s) 653, 1451
BsmFI GGGAC 4 cut(s) 146, 1133, 1138, 1426
BsnI GGCC 8 cut(s) 644, 650, 737, 875, 1011, 1128, 1228, 1747
Bso31I GGTCTC 1 cut(s) 653
Bsp1286I GDGCHC 4 cut(s) 282, 922, 1255, 1577
Bsp143I GATC 4 cut(s) 1330, 1483, 1729, 1806
Bsp19I CCATGG 1 cut(s) 1220
BspACI CCGC 3 cut(s) 473, 845, 1048
BspANI GGCC 8 cut(s) 644, 650, 737, 875, 1011, 1128, 1228, 1747
BspCNI CTCAG 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 1292, 1442
BspMAI CTGCAG 1 cut(s) 1900
BspMI ACCTGC 1 cut(s) 1903
BspPI GGATC 2 cut(s) 1491, 1814
BspTNI GGTCTC 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 3 cut(s) 181, 574, 876
BssECI CCNNGG 4 cut(s) 645, 651, 1220, 1293
BssMI GATC 4 cut(s) 1330, 1483, 1729, 1806
BssT1I CCWWGG 3 cut(s) 645, 651, 1220
Bst2UI CCWGG 1 cut(s) 1749
Bst4CI ACNGT 3 cut(s) 24, 316, 1002
Bst6I CTCTTC 3 cut(s) 455, 1293, 1302
BstAPI GCANNNNNTGC 1 cut(s) 1528
BstC8I GCNNGC 2 cut(s) 1529, 1702
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 1220
BstF5I GGATG 6 cut(s) 97, 250, 376, 1399, 1702, 1732
BstHHI GCGC 1 cut(s) 1404
BstKTI GATC 4 cut(s) 1333, 1486, 1732, 1809
BstMAI GTCTC 2 cut(s) 653, 1451
BstMBI GATC 4 cut(s) 1330, 1483, 1729, 1806
BstMWI GCNNNNNNNGC 2 cut(s) 524, 1528
BstNI CCWGG 1 cut(s) 1749
BstNSI RCATGY 3 cut(s) 755, 1112, 1531
BstPAI GACNNNNGTC 1 cut(s) 1438
BstSCI CCNGG 2 cut(s) 1293, 1747
BstSFI CTRYAG 3 cut(s) 127, 333, 1896
BstSLI GKGCMC 1 cut(s) 1577
BstV1I GCAGC 7 cut(s) 696, 903, 1223, 1401, 1518, 1608, 1659
BstV2I GAAGAC 5 cut(s) 356, 867, 985, 1035, 1071
BstX2I RGATCY 1 cut(s) 1483
BstYI RGATCY 1 cut(s) 1483
BsuRI GGCC 8 cut(s) 644, 650, 737, 875, 1011, 1128, 1228, 1747
BtgI CCRYGG 1 cut(s) 1220
BtgZI GCGATG 1 cut(s) 1783
BtsCI GGATG 6 cut(s) 97, 250, 376, 1399, 1702, 1732
BtsI GCAGTG 1 cut(s) 583
BtsIMutI CAGTG 2 cut(s) 583, 1567
BveI ACCTGC 1 cut(s) 1903
Cac8I GCNNGC 2 cut(s) 1529, 1702
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 1404
Cfr13I GGNCC 4 cut(s) 1010, 1227, 1290, 1440
CseI GACGC 1 cut(s) 1443
Csp6I GTAC 4 cut(s) 488, 567, 1303, 1453
CspCI CAANNNNNGTGG 2 cut(s) 1628, 1663
CviQI GTAC 4 cut(s) 488, 567, 1303, 1453
DdeI CTNAG 1 cut(s) 393
DpnI GATC 4 cut(s) 1332, 1485, 1731, 1808
DpnII GATC 4 cut(s) 1330, 1483, 1729, 1806
Eam1104I CTCTTC 3 cut(s) 455, 1293, 1302
EarI CTCTTC 3 cut(s) 455, 1293, 1302
Ecl136II GAGCTC 2 cut(s) 280, 920
Eco130I CCWWGG 3 cut(s) 645, 651, 1220
Eco147I AGGCCT 1 cut(s) 1747
Eco24I GRGCYC 3 cut(s) 282, 922, 1255
Eco31I GGTCTC 1 cut(s) 653
Eco47I GGWCC 2 cut(s) 1290, 1440
Eco53kI GAGCTC 2 cut(s) 280, 920
Eco57I CTGAAG 1 cut(s) 1182
EcoICRI GAGCTC 2 cut(s) 280, 920
EcoO109I RGGNCCY 1 cut(s) 1227
EcoRI GAATTC 1 cut(s) 1380
EcoRII CCWGG 1 cut(s) 1747
EcoT14I CCWWGG 3 cut(s) 645, 651, 1220
EcoT22I ATGCAT 1 cut(s) 1399
EcoT38I GRGCYC 3 cut(s) 282, 922, 1255
ErhI CCWWGG 3 cut(s) 645, 651, 1220
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 4 cut(s) 146, 1133, 1138, 1426
FauI CCCGC 1 cut(s) 466
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 7 cut(s) 685, 892, 1212, 1415, 1532, 1597, 1673
FokI GGATG 6 cut(s) 104, 257, 383, 1406, 1709, 1739
FriOI GRGCYC 3 cut(s) 282, 922, 1255
Fsp4HI GCNGC 7 cut(s) 685, 892, 1212, 1415, 1532, 1597, 1673
FspBI CTAG 2 cut(s) 1578, 1887
GlaI GCGC 1 cut(s) 1403
GluI GCNGC 7 cut(s) 685, 892, 1212, 1415, 1532, 1597, 1673
GsaI CCCAGC 1 cut(s) 1552
GsuI CTGGAG 2 cut(s) 540, 1770
HaeIII GGCC 8 cut(s) 644, 650, 737, 875, 1011, 1128, 1228, 1747
HapII CCGG 1 cut(s) 1295
HgaI GACGC 1 cut(s) 1443
HhaI GCGC 1 cut(s) 1404
Hin6I GCGC 1 cut(s) 1402
HinP1I GCGC 1 cut(s) 1402
HincII GTYRAC 2 cut(s) 328, 1903
HindII GTYRAC 2 cut(s) 328, 1903
HindIII AAGCTT 1 cut(s) 1364
HinfI GANTC 4 cut(s) 35, 329, 522, 1679
HpaII CCGG 1 cut(s) 1295
HphI GGTGA 4 cut(s) 491, 632, 990, 1617
Hpy166II GTNNAC 4 cut(s) 328, 1477, 1892, 1903
Hpy188I TCNGA 9 cut(s) 559, 593, 745, 781, 829, 934, 1006, 1057, 1425
Hpy188III TCNNGA 4 cut(s) 39, 365, 923, 1820
Hpy8I GTNNAC 4 cut(s) 328, 1477, 1892, 1903
HpyAV CCTTC 7 cut(s) 4, 67, 82, 634, 727, 1192, 1489
HpyCH4III ACNGT 3 cut(s) 24, 316, 1002
HpyCH4IV ACGT 5 cut(s) 584, 835, 1282, 1568, 1846
HpyCH4V TGCA 7 cut(s) 410, 588, 768, 855, 1397, 1596, 1898
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 1528
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 5 cut(s) 584, 835, 1282, 1568, 1846
HspAI GCGC 1 cut(s) 1402
Kzo9I GATC 4 cut(s) 1330, 1483, 1729, 1806
LmnI GCTCC 5 cut(s) 277, 573, 917, 925, 1337
Lsp1109I GCAGC 7 cut(s) 696, 903, 1223, 1401, 1518, 1608, 1659
LweI GCATC 5 cut(s) 597, 965, 1384, 1687, 1783
MaeI CTAG 2 cut(s) 1578, 1887
MaeII ACGT 5 cut(s) 584, 835, 1282, 1568, 1846
MalI GATC 4 cut(s) 1332, 1485, 1731, 1808
MboI GATC 4 cut(s) 1330, 1483, 1729, 1806
MflI RGATCY 1 cut(s) 1483
MhlI GDGCHC 4 cut(s) 282, 922, 1255, 1577
MluCI AATT 9 cut(s) 106, 360, 482, 928, 1181, 1189, 1380, 1616, 1863
MlyI GAGTC 2 cut(s) 323, 531
MmeI TCCRAC 3 cut(s) 6, 807, 1175
Mph1103I ATGCAT 1 cut(s) 1399
MroXI GAANNNNTTC 1 cut(s) 109
MslI CAYNNNNRTG 1 cut(s) 540
MspI CCGG 1 cut(s) 1295
MspR9I CCNGG 2 cut(s) 1295, 1749
MvaI CCWGG 1 cut(s) 1749
MwoI GCNNNNNNNGC 2 cut(s) 524, 1528
NciI CCSGG 1 cut(s) 1295
NcoI CCATGG 1 cut(s) 1220
NdeI CATATG 1 cut(s) 186
NdeII GATC 4 cut(s) 1330, 1483, 1729, 1806
NlaIV GGNNCC 2 cut(s) 1292, 1442
NmeAIII GCCGAG 1 cut(s) 1300
NsiI ATGCAT 1 cut(s) 1399
NspI RCATGY 3 cut(s) 755, 1112, 1531
PaeI GCATGC 1 cut(s) 1531
PceI AGGCCT 1 cut(s) 1747
PciI ACATGT 1 cut(s) 751
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 35, 1679
PkrI GCNGC 7 cut(s) 686, 893, 1213, 1416, 1533, 1598, 1674
PleI GAGTC 2 cut(s) 323, 530
PpsI GAGTC 2 cut(s) 323, 530
PscI ACATGT 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 1438
PshBI ATTAAT 1 cut(s) 267
Psp124BI GAGCTC 2 cut(s) 282, 922
Psp1406I AACGTT 2 cut(s) 1568, 1846
Psp6I CCWGG 1 cut(s) 1747
PspFI CCCAGC 1 cut(s) 1548
PspGI CCWGG 1 cut(s) 1747
PspN4I GGNNCC 2 cut(s) 1292, 1442
PspPI GGNCC 4 cut(s) 1010, 1227, 1290, 1440
PstI CTGCAG 1 cut(s) 1900
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 1 cut(s) 1483
RsaI GTAC 4 cut(s) 489, 568, 1304, 1454
RsaNI GTAC 4 cut(s) 488, 567, 1303, 1453
RseI CAYNNNNRTG 1 cut(s) 540
SacI GAGCTC 2 cut(s) 282, 922
SatI GCNGC 7 cut(s) 685, 892, 1212, 1415, 1532, 1597, 1673
Sau3AI GATC 4 cut(s) 1330, 1483, 1729, 1806
Sau96I GGNCC 4 cut(s) 1010, 1227, 1290, 1440
SchI GAGTC 2 cut(s) 323, 531
ScrFI CCNGG 2 cut(s) 1295, 1749
SduI GDGCHC 4 cut(s) 282, 922, 1255, 1577
SfaNI GCATC 5 cut(s) 597, 965, 1384, 1687, 1783
SfcI CTRYAG 3 cut(s) 127, 333, 1896
SinI GGWCC 2 cut(s) 1290, 1440
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 365, 1736
SmoI CTYRAG 2 cut(s) 365, 1736
SphI GCATGC 1 cut(s) 1531
Sse9I AATT 9 cut(s) 106, 360, 482, 928, 1181, 1189, 1380, 1616, 1863
SseBI AGGCCT 1 cut(s) 1747
SsiI CCGC 3 cut(s) 473, 845, 1048
SspI AATATT 1 cut(s) 1543
SspMI CTAG 2 cut(s) 1578, 1887
SstI GAGCTC 2 cut(s) 282, 922
StuI AGGCCT 1 cut(s) 1747
StyD4I CCNGG 2 cut(s) 1293, 1747
StyI CCWWGG 3 cut(s) 645, 651, 1220
TaaI ACNGT 3 cut(s) 24, 316, 1002
TaiI ACGT 5 cut(s) 587, 838, 1285, 1571, 1849
TasI AATT 9 cut(s) 106, 360, 482, 928, 1181, 1189, 1380, 1616, 1863
TfiI GAWTC 2 cut(s) 35, 1679
TscAI CASTG 2 cut(s) 583, 1567
TseI GCWGC 7 cut(s) 684, 891, 1211, 1414, 1531, 1596, 1672
TspDTI ATGAA 7 cut(s) 108, 203, 873, 1041, 1373, 1508, 1616
TspGWI ACGGA 3 cut(s) 103, 292, 472
TspRI CASTG 2 cut(s) 583, 1567
VpaK11BI GGWCC 2 cut(s) 1290, 1440
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 3 cut(s) 106, 360, 1380
XceI RCATGY 3 cut(s) 755, 1112, 1531
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 2 cut(s) 1578, 1887
Zsp2I ATGCAT 1 cut(s) 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.