Rorug05G0311800
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002258
Physical Location & Seq
Forward (+)
36746182 .. 36747203
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0311800.1

Sequence Viewer

Length: 402 bp
ATGAGAGAAAATAATGTTACAGTAGTCTCTACTGCTCTTAACCTTGGGGCTCCTTTCAATGAAATGATTGCATTAAGAGGTTTGGTTCCGCTGTATGTAACATTGAATCAGCGTCTACCTTTCTTTGATAATATAATGGACTTGATTCATACCGCTGGGTTTCTGGATGGCTGGATTGACCTGCAGTTGCTGGATTTCATCCTGTTTGATTGGGACCGAATTCTGAGGCCCGGCGGATTGTTATGGATTGACCGGTTCTTCTGCAATAAAAAGGATTTGGATGATTTCATGTATATGTTTCTGCAGTTGAGATACAAGAAACACAAGTGGGTTATTTCTCCCAAATCAAAGGATGAGGTCTACTTTTCTGCAGTGTTAGAGAAACCTCCAAGAGCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

133

Amino Acids

15.7

Weight (kDa)

6.72

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
AccI GTMKAC 2 cut(s) 115, 360
AciI CCGC 3 cut(s) 89, 153, 234
AcsI RAATTY 1 cut(s) 219
AgeI ACCGGT 1 cut(s) 252
AgsI TTSAA 2 cut(s) 58, 106
Alw26I GTCTC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 219
AsiGI ACCGGT 1 cut(s) 252
AspS9I GGNCC 2 cut(s) 214, 228
AsuC2I CCSGG 1 cut(s) 231
AvaII GGWCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 52
BccI CCATC 1 cut(s) 161
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 31
BfmI CTRYAG 3 cut(s) 182, 302, 369
BfuAI ACCTGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 214, 228
BmiI GGNNCC 3 cut(s) 51, 87, 215
BmrFI CCNGG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 4 cut(s) 172, 198, 286, 358
BseMII CTCAG 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 1 cut(s) 229
BshTI ACCGGT 1 cut(s) 252
BsiSI CCGG 2 cut(s) 231, 253
BslFI GGGAC 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 52
BspACI CCGC 3 cut(s) 89, 153, 234
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 51, 87, 215
BspMAI CTGCAG 3 cut(s) 186, 306, 373
BspMI ACCTGC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 4 cut(s) 172, 198, 286, 358
BstMAI GTCTC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 3 cut(s) 182, 302, 369
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 4 cut(s) 172, 198, 286, 358
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 214, 228
CseI GACGC 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 252
CviAII CATG 1 cut(s) 289
CviJI RGCY 3 cut(s) 50, 171, 229
CviKI_1 RGCY 3 cut(s) 50, 171, 229
DdeI CTNAG 1 cut(s) 224
EciI GGCGGA 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 292
FaiI YATR 7 cut(s) 96, 134, 150, 244, 290, 294, 296
FaqI GGGAC 1 cut(s) 227
FatI CATG 1 cut(s) 288
FblI GTMKAC 2 cut(s) 115, 360
FokI GGATG 4 cut(s) 179, 185, 293, 365
FriOI GRGCYC 1 cut(s) 52
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 229
HapII CCGG 2 cut(s) 231, 253
HgaI GACGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 292
HinfI GANTC 2 cut(s) 106, 145
HpaII CCGG 2 cut(s) 231, 253
Hpy166II GTNNAC 2 cut(s) 116, 361
Hpy188I TCNGA 2 cut(s) 225, 401
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 116, 361
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 71, 184, 264, 304, 371
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 1 cut(s) 292
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 8 cut(s) 141, 149, 157, 176, 194, 215, 244, 266
MaeIII GTNAC 2 cut(s) 16, 97
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 1 cut(s) 219
MnlI CCTC 4 cut(s) 71, 219, 349, 396
MseI TTAA 2 cut(s) 39, 74
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 2 cut(s) 91, 155
MspI CCGG 2 cut(s) 231, 253
MspR9I CCNGG 1 cut(s) 231
NciI CCSGG 1 cut(s) 231
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 3 cut(s) 51, 87, 215
PfeI GAWTC 2 cut(s) 106, 145
PinAI ACCGGT 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 3 cut(s) 51, 87, 215
PspPI GGNCC 2 cut(s) 214, 228
PstI CTGCAG 3 cut(s) 186, 306, 373
PstNI CAGNNNCTG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 39, 74
Sau96I GGNCC 2 cut(s) 214, 228
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 52
SetI ASST 6 cut(s) 45, 82, 121, 183, 360, 388
SfcI CTRYAG 3 cut(s) 182, 302, 369
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 1 cut(s) 219
SsiI CCGC 3 cut(s) 89, 153, 234
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 22
TaqII GACCGA 1 cut(s) 231
TasI AATT 1 cut(s) 219
TfiI GAWTC 2 cut(s) 106, 145
Tru1I TTAA 2 cut(s) 39, 74
Tru9I TTAA 2 cut(s) 39, 74
TscAI CASTG 1 cut(s) 378
TspDTI ATGAA 4 cut(s) 75, 137, 187, 277
TspRI CASTG 1 cut(s) 378
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 219
XmiI GTMKAC 2 cut(s) 115, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.