SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G41020 |
| fragaria_vesca | FvH4_3g31460 FvH4_3g31460 FvH4_3g31460 |
| malus_domestica | MD04G1037700.v1.1 |
| prunus_persica | Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1 |
| pyrus_communis | pycom04g03080 |
| rosa_chinensis | RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601 |
| rosa_laevigata | RLG00000002025 RLG00000022792 RLG00000035196 |
| rosa_multiflora | Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034 |
| rosa_roxburghii | Rroxscaffold_1G00022430 Rroxscaffold_6G00392510 |
| rosa_rugosa | Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100 |
| rosa_samantha | Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500 |
| rosa_wichuraiana | Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 490 |
| AccB1I | GGYRCC | 1 cut(s) | 490 |
| AciI | CCGC | 2 cut(s) | 845, 1144 |
| AcsI | RAATTY | 2 cut(s) | 106, 363 |
| AcuI | CTGAAG | 1 cut(s) | 1182 |
| AfaI | GTAC | 2 cut(s) | 492, 1305 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1007, 1135, 1221 |
| AflIII | ACRYGT | 1 cut(s) | 751 |
| AgsI | TTSAA | 5 cut(s) | 35, 101, 122, 1186, 1268 |
| AjnI | CCWGG | 1 cut(s) | 875 |
| AluBI | AGCT | 3 cut(s) | 283, 894, 920 |
| AluI | AGCT | 3 cut(s) | 283, 894, 920 |
| Alw21I | GWGCWC | 2 cut(s) | 285, 922 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 785 |
| AoxI | GGCC | 6 cut(s) | 648, 735, 873, 1009, 1126, 1226 |
| ApeKI | GCWGC | 3 cut(s) | 684, 891, 1211 |
| ApoI | RAATTY | 2 cut(s) | 106, 363 |
| AseI | ATTAAT | 1 cut(s) | 270 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 109 |
| Asp718I | GGTACC | 1 cut(s) | 490 |
| AspS9I | GGNCC | 3 cut(s) | 1010, 1227, 1291 |
| AsuHPI | GGTGA | 2 cut(s) | 494, 990 |
| AvaII | GGWCC | 1 cut(s) | 1291 |
| BaeGI | GKGCMC | 1 cut(s) | 575 |
| BanI | GGYRCC | 1 cut(s) | 490 |
| BanII | GRGCYC | 3 cut(s) | 285, 922, 1255 |
| BbsI | GAAGAC | 5 cut(s) | 359, 867, 985, 1035, 1071 |
| Bbv12I | GWGCWC | 2 cut(s) | 285, 922 |
| BbvI | GCAGC | 3 cut(s) | 696, 903, 1223 |
| BccI | CCATC | 8 cut(s) | 287, 368, 503, 539, 617, 710, 1001, 1118 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 676, 710 |
| BciT130I | CCWGG | 1 cut(s) | 877 |
| BfmI | CTRYAG | 1 cut(s) | 336 |
| BisI | GCNGC | 3 cut(s) | 685, 892, 1212 |
| BlsI | GCNGC | 3 cut(s) | 686, 893, 1213 |
| Bme1390I | CCNGG | 1 cut(s) | 877 |
| Bme18I | GGWCC | 1 cut(s) | 1291 |
| BmgT120I | GGNCC | 3 cut(s) | 1010, 1227, 1291 |
| BmiI | GGNNCC | 3 cut(s) | 492, 1292, 1293 |
| BmrFI | CCNGG | 1 cut(s) | 877 |
| BmrI | ACTGGG | 1 cut(s) | 585 |
| BmsI | GCATC | 2 cut(s) | 603, 965 |
| BmuI | ACTGGG | 1 cut(s) | 585 |
| BpiI | GAAGAC | 5 cut(s) | 359, 867, 985, 1035, 1071 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 980, 1012 |
| BpmI | CTGGAG | 1 cut(s) | 543 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BsaJI | CCNNGG | 2 cut(s) | 651, 1220 |
| BsaWI | WCCGGW | 1 cut(s) | 493 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1007, 1135, 1221 |
| Bse1I | ACTGG | 2 cut(s) | 181, 580 |
| Bse3DI | GCAATG | 1 cut(s) | 862 |
| BseBI | CCWGG | 1 cut(s) | 877 |
| BseDI | CCNNGG | 2 cut(s) | 651, 1220 |
| BseGI | GGATG | 4 cut(s) | 97, 379, 502, 1126 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1007, 1135, 1221 |
| BseMI | GCAATG | 1 cut(s) | 862 |
| BseMII | CTCAG | 1 cut(s) | 387 |
| BseNI | ACTGG | 2 cut(s) | 181, 580 |
| BseRI | GAGGAG | 1 cut(s) | 244 |
| BseSI | GKGCMC | 1 cut(s) | 575 |
| BseXI | GCAGC | 3 cut(s) | 696, 903, 1223 |
| BshFI | GGCC | 6 cut(s) | 650, 737, 875, 1011, 1128, 1228 |
| BshNI | GGYRCC | 1 cut(s) | 490 |
| BsiHKAI | GWGCWC | 2 cut(s) | 285, 922 |
| BsiSI | CCGG | 1 cut(s) | 494 |
| BslFI | GGGAC | 2 cut(s) | 146, 1304 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1007, 1135, 1221 |
| BsmFI | GGGAC | 2 cut(s) | 146, 1304 |
| BsnI | GGCC | 6 cut(s) | 650, 737, 875, 1011, 1128, 1228 |
| Bsp1286I | GDGCHC | 4 cut(s) | 285, 575, 922, 1255 |
| Bsp19I | CCATGG | 1 cut(s) | 1220 |
| BspACI | CCGC | 2 cut(s) | 845, 1144 |
| BspANI | GGCC | 6 cut(s) | 650, 737, 875, 1011, 1128, 1228 |
| BspCNI | CTCAG | 1 cut(s) | 388 |
| BspLI | GGNNCC | 3 cut(s) | 492, 1292, 1293 |
| BspT107I | GGYRCC | 1 cut(s) | 490 |
| BsrDI | GCAATG | 1 cut(s) | 862 |
| BsrI | ACTGG | 2 cut(s) | 181, 580 |
| BssECI | CCNNGG | 2 cut(s) | 651, 1220 |
| BssT1I | CCWWGG | 2 cut(s) | 651, 1220 |
| Bst2UI | CCWGG | 1 cut(s) | 877 |
| Bst4CI | ACNGT | 4 cut(s) | 319, 539, 1002, 1050 |
| Bst6I | CTCTTC | 2 cut(s) | 458, 1303 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstDSI | CCRYGG | 1 cut(s) | 1220 |
| BstF5I | GGATG | 4 cut(s) | 97, 379, 502, 1126 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 527, 579 |
| BstNI | CCWGG | 1 cut(s) | 877 |
| BstNSI | RCATGY | 2 cut(s) | 755, 1112 |
| BstSCI | CCNGG | 1 cut(s) | 875 |
| BstSFI | CTRYAG | 1 cut(s) | 336 |
| BstSLI | GKGCMC | 1 cut(s) | 575 |
| BstV1I | GCAGC | 3 cut(s) | 696, 903, 1223 |
| BstV2I | GAAGAC | 5 cut(s) | 359, 867, 985, 1035, 1071 |
| BsuRI | GGCC | 6 cut(s) | 650, 737, 875, 1011, 1128, 1228 |
| BtgI | CCRYGG | 1 cut(s) | 1220 |
| BtsCI | GGATG | 4 cut(s) | 97, 379, 502, 1126 |
| BtsI | GCAGTG | 1 cut(s) | 589 |
| BtsIMutI | CAGTG | 2 cut(s) | 573, 589 |
| CaiI | CAGNNNCTG | 1 cut(s) | 785 |
| Cfr13I | GGNCC | 3 cut(s) | 1010, 1227, 1291 |
| Csp6I | GTAC | 2 cut(s) | 491, 1304 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 160, 195 |
| CviAII | CATG | 6 cut(s) | 604, 752, 1025, 1109, 1135, 1221 |
| CviQI | GTAC | 2 cut(s) | 491, 1304 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 2 cut(s) | 458, 1303 |
| EarI | CTCTTC | 2 cut(s) | 458, 1303 |
| Ecl136II | GAGCTC | 2 cut(s) | 283, 920 |
| Eco130I | CCWWGG | 2 cut(s) | 651, 1220 |
| Eco24I | GRGCYC | 3 cut(s) | 285, 922, 1255 |
| Eco47I | GGWCC | 1 cut(s) | 1291 |
| Eco53kI | GAGCTC | 2 cut(s) | 283, 920 |
| Eco57I | CTGAAG | 1 cut(s) | 1182 |
| EcoICRI | GAGCTC | 2 cut(s) | 283, 920 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1227, 1291 |
| EcoRII | CCWGG | 1 cut(s) | 875 |
| EcoT14I | CCWWGG | 2 cut(s) | 651, 1220 |
| EcoT38I | GRGCYC | 3 cut(s) | 285, 922, 1255 |
| ErhI | CCWWGG | 2 cut(s) | 651, 1220 |
| FaeI | CATG | 6 cut(s) | 607, 755, 1028, 1112, 1138, 1224 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 94, 126 |
| FaqI | GGGAC | 2 cut(s) | 146, 1304 |
| FatI | CATG | 6 cut(s) | 603, 751, 1024, 1108, 1134, 1220 |
| FauNDI | CATATG | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 3 cut(s) | 685, 892, 1212 |
| FokI | GGATG | 4 cut(s) | 104, 386, 509, 1133 |
| FriOI | GRGCYC | 3 cut(s) | 285, 922, 1255 |
| Fsp4HI | GCNGC | 3 cut(s) | 685, 892, 1212 |
| GluI | GCNGC | 3 cut(s) | 685, 892, 1212 |
| GsuI | CTGGAG | 1 cut(s) | 543 |
| HaeIII | GGCC | 6 cut(s) | 650, 737, 875, 1011, 1128, 1228 |
| HapII | CCGG | 1 cut(s) | 494 |
| Hin1II | CATG | 6 cut(s) | 607, 755, 1028, 1112, 1138, 1224 |
| HincII | GTYRAC | 2 cut(s) | 331, 706 |
| HindII | GTYRAC | 2 cut(s) | 331, 706 |
| HinfI | GANTC | 2 cut(s) | 35, 332 |
| HpaI | GTTAAC | 1 cut(s) | 706 |
| HpaII | CCGG | 1 cut(s) | 494 |
| HphI | GGTGA | 2 cut(s) | 494, 990 |
| Hpy166II | GTNNAC | 3 cut(s) | 331, 706, 1046 |
| Hpy188I | TCNGA | 7 cut(s) | 599, 745, 781, 829, 934, 1006, 1057 |
| Hpy188III | TCNNGA | 3 cut(s) | 39, 368, 923 |
| Hpy8I | GTNNAC | 3 cut(s) | 331, 706, 1046 |
| HpyAV | CCTTC | 6 cut(s) | 4, 67, 82, 640, 727, 1192 |
| HpyCH4III | ACNGT | 4 cut(s) | 319, 539, 1002, 1050 |
| HpyCH4IV | ACGT | 4 cut(s) | 590, 708, 835, 1282 |
| HpyCH4V | TGCA | 4 cut(s) | 413, 594, 768, 855 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 527, 579 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| HpySE526I | ACGT | 4 cut(s) | 590, 708, 835, 1282 |
| Hsp92II | CATG | 6 cut(s) | 607, 755, 1028, 1112, 1138, 1224 |
| KflI | GGGWCCC | 1 cut(s) | 1291 |
| KpnI | GGTACC | 1 cut(s) | 494 |
| KspAI | GTTAAC | 1 cut(s) | 706 |
| LmnI | GCTCC | 4 cut(s) | 280, 579, 917, 925 |
| Lsp1109I | GCAGC | 3 cut(s) | 696, 903, 1223 |
| LweI | GCATC | 2 cut(s) | 603, 965 |
| MaeII | ACGT | 4 cut(s) | 590, 708, 835, 1282 |
| MaeIII | GTNAC | 2 cut(s) | 499, 533 |
| MhlI | GDGCHC | 4 cut(s) | 285, 575, 922, 1255 |
| MluCI | AATT | 6 cut(s) | 106, 363, 485, 928, 1181, 1189 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 2 cut(s) | 807, 1175 |
| MroXI | GAANNNNTTC | 1 cut(s) | 109 |
| MseI | TTAA | 7 cut(s) | 270, 669, 705, 789, 896, 1091, 1233 |
| MspI | CCGG | 1 cut(s) | 494 |
| MspR9I | CCNGG | 1 cut(s) | 877 |
| MvaI | CCWGG | 1 cut(s) | 877 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 527, 579 |
| NcoI | CCATGG | 1 cut(s) | 1220 |
| NdeI | CATATG | 1 cut(s) | 189 |
| NlaIII | CATG | 6 cut(s) | 607, 755, 1028, 1112, 1138, 1224 |
| NlaIV | GGNNCC | 3 cut(s) | 492, 1292, 1293 |
| NmeAIII | GCCGAG | 1 cut(s) | 1300 |
| NmuCI | GTSAC | 1 cut(s) | 499 |
| NspI | RCATGY | 2 cut(s) | 755, 1112 |
| PciI | ACATGT | 1 cut(s) | 751 |
| PdmI | GAANNNNTTC | 1 cut(s) | 109 |
| PfeI | GAWTC | 1 cut(s) | 35 |
| PkrI | GCNGC | 3 cut(s) | 686, 893, 1213 |
| PleI | GAGTC | 1 cut(s) | 326 |
| PpsI | GAGTC | 1 cut(s) | 326 |
| PpuMI | RGGWCCY | 1 cut(s) | 1291 |
| PscI | ACATGT | 1 cut(s) | 751 |
| PshBI | ATTAAT | 1 cut(s) | 270 |
| Psp124BI | GAGCTC | 2 cut(s) | 285, 922 |
| Psp5II | RGGWCCY | 1 cut(s) | 1291 |
| Psp6I | CCWGG | 1 cut(s) | 875 |
| PspGI | CCWGG | 1 cut(s) | 875 |
| PspN4I | GGNNCC | 3 cut(s) | 492, 1292, 1293 |
| PspPI | GGNCC | 3 cut(s) | 1010, 1227, 1291 |
| PspPPI | RGGWCCY | 1 cut(s) | 1291 |
| PstNI | CAGNNNCTG | 1 cut(s) | 785 |
| RsaI | GTAC | 2 cut(s) | 492, 1305 |
| RsaNI | GTAC | 2 cut(s) | 491, 1304 |
| SacI | GAGCTC | 2 cut(s) | 285, 922 |
| SaqAI | TTAA | 7 cut(s) | 270, 669, 705, 789, 896, 1091, 1233 |
| SatI | GCNGC | 3 cut(s) | 685, 892, 1212 |
| Sau96I | GGNCC | 3 cut(s) | 1010, 1227, 1291 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 1 cut(s) | 877 |
| SduI | GDGCHC | 4 cut(s) | 285, 575, 922, 1255 |
| SfaNI | GCATC | 2 cut(s) | 603, 965 |
| SfcI | CTRYAG | 1 cut(s) | 336 |
| SinI | GGWCC | 1 cut(s) | 1291 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| Sse9I | AATT | 6 cut(s) | 106, 363, 485, 928, 1181, 1189 |
| SsiI | CCGC | 2 cut(s) | 845, 1144 |
| SstI | GAGCTC | 2 cut(s) | 285, 922 |
| StyD4I | CCNGG | 1 cut(s) | 875 |
| StyI | CCWWGG | 2 cut(s) | 651, 1220 |
| TaaI | ACNGT | 4 cut(s) | 319, 539, 1002, 1050 |
| TaiI | ACGT | 4 cut(s) | 593, 711, 838, 1285 |
| TaqI | TCGA | 2 cut(s) | 696, 941 |
| TasI | AATT | 6 cut(s) | 106, 363, 485, 928, 1181, 1189 |
| TfiI | GAWTC | 1 cut(s) | 35 |
| Tru1I | TTAA | 7 cut(s) | 270, 669, 705, 789, 896, 1091, 1233 |
| Tru9I | TTAA | 7 cut(s) | 270, 669, 705, 789, 896, 1091, 1233 |
| TscAI | CASTG | 2 cut(s) | 580, 589 |
| TseFI | GTSAC | 1 cut(s) | 499 |
| TseI | GCWGC | 3 cut(s) | 684, 891, 1211 |
| Tsp45I | GTSAC | 1 cut(s) | 499 |
| TspDTI | ATGAA | 4 cut(s) | 108, 206, 873, 1041 |
| TspGWI | ACGGA | 3 cut(s) | 103, 295, 530 |
| TspRI | CASTG | 2 cut(s) | 580, 589 |
| VpaK11BI | GGWCC | 1 cut(s) | 1291 |
| VspI | ATTAAT | 1 cut(s) | 270 |
| XapI | RAATTY | 2 cut(s) | 106, 363 |
| XceI | RCATGY | 2 cut(s) | 755, 1112 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 911 |
| XmnI | GAANNNNTTC | 1 cut(s) | 109 |