Rmu_sc0000367.1_g000018
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
Physical Location & Seq
Forward (+)
102573 .. 104483
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000367.1_g000018.1.cds

Sequence Viewer

Length: 1911 bp
atgggaaggaaggagaggacaccgttggagtttgaatcaggaaaagagaagaaaaagcacaaggagaaaaggaaggagaaagcgaagaaggatgaacttgaaagaaattctttcgtgcttgaagtctgtggggacaaaatgggcaaggaagttgaggggctgaaatatgacaagactggtggaaatcatatgaatagtggagaagaagccaataagaaaaagaaaaggaggagggaaaaggagggggatgatatggtaatagatatgattaataaaaaggagctcataaatgatggggagaaatccgttgggaaaactgtggagaaagttgactctacaggtagtgtaaagaagacacaaaaaattcttgaggatggaaaagtaggtgtggcaactgagtatggagatgttgcacaaataaacaacaagggaggaaataaaaagaaaaaagagaagaaacggaagagggaaaaagcgggtggtgaattggtacagaatatcacaagtgatggaatggaggctggagtcgcaagtaagcatttagatgggcatattgtgtctgaaaatcgtactgggagcagtgaaacgtgcatcagaaacgtaaaggctgttgatgtagatggtgagaaaacgaggaagaagaaggccaaggccaaggcagagacccttgttaatggagaagttagcagcagaaatgtggaggttgttaatgtagaagatggtaaaaaaagaaagaaggccaagtcagagaaacatgttgtagaagattgcaacagaaaatcagaggctgttaatgtaggaaatagtaagaaaaggaagaagtccaagtcggagaaacgtggtattgcggaggtttgcaatgaagacaagaaaaaggccagttcaagtgaaggcagcttaatagccccaaaaagcattggagctcctgacaattctgaaaaatcaacccctaaaaaagcatcaaaaagagtaagttttgctgatgatgtggaggtcttctcaccgtctgatggcccaaatgatgagcatgaagaccttgtaagaggtaagcggttttcagaagaagaagacaagattgtgaaagaggctgttttaagatacatagaggaacatgctttaggggatgatggcctcaacatggttctgcgttgtaagtcccaccctgaagtcaaaaaccacccagaattgaaaaattgttggaaggatattggggcagccttaccatggaggccctttaagagtgtatattatagagcccatattttgtttgaacgagccgagaaacgtatttggaccccggaagagtacgaagaggtaaagaagttccataaagatcggggagctgattggagaactttgggtgataagcttggcaaacatagaattcatgtcaaggatgcatggcgcagaataaggctgccaaatcagaagaaaggacgctggtcccaagaggagtacgagactttatttgatttagtgaacatggatctgcgtatgaaggtttttgaagaaaagaaaaccaagcatggcatgctgcgggataatatttgctgggaggcaatcagtgaaacgttgggcactagaaccaatgctgtttgcagcatgaagtggtataaccaattaacatcacctttggtaagccaaaagctgtgggctgacattgacgactatcggctgcttgattctctcaatagcttggatgcttgctgtattgaagatgttgattgggatgatctgcttgagcataggcctggagatgtttgccaaaagcgatggcatcaaatggtcaaacatattggtcatcatgggatcaagtcctttcctgaacaagtggaagttttatctaaacgttatcttgccgatttaattgaagcaagggaaatctatgctagtaaacctgcagttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

636

Amino Acids

72.61

Weight (kDa)

9.16

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1906
AciI CCGC 4 cut(s) 476, 848, 1051, 1537
AclI AACGTT 2 cut(s) 1571, 1849
AclWI GGATC 2 cut(s) 1494, 1817
AcsI RAATTY 3 cut(s) 106, 363, 1383
AcuI CTGAAG 1 cut(s) 1185
AfaI GTAC 4 cut(s) 492, 571, 1307, 1457
AfiI CCNNNNNNNGG 3 cut(s) 1010, 1138, 1224
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 9 cut(s) 35, 101, 122, 885, 1189, 1271, 1508, 1715, 1871
AjnI CCWGG 1 cut(s) 1750
AluBI AGCT 7 cut(s) 283, 897, 923, 1343, 1369, 1648, 1695
AluI AGCT 7 cut(s) 283, 897, 923, 1343, 1369, 1648, 1695
Alw21I GWGCWC 2 cut(s) 285, 925
Alw26I GTCTC 2 cut(s) 656, 1454
AlwI GGATC 2 cut(s) 1494, 1817
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 8 cut(s) 645, 651, 738, 876, 1012, 1129, 1229, 1748
ApeKI GCWGC 7 cut(s) 687, 894, 1214, 1417, 1534, 1599, 1675
ApoI RAATTY 3 cut(s) 106, 363, 1383
AseI ATTAAT 1 cut(s) 270
AspLEI GCGC 1 cut(s) 1407
AspS9I GGNCC 4 cut(s) 1013, 1230, 1293, 1443
AsuC2I CCSGG 1 cut(s) 1298
AsuHPI GGTGA 5 cut(s) 494, 635, 993, 1373, 1620
AvaII GGWCC 2 cut(s) 1293, 1443
BaeGI GKGCMC 1 cut(s) 1580
BanII GRGCYC 3 cut(s) 285, 925, 1258
BbsI GAAGAC 5 cut(s) 359, 870, 988, 1038, 1074
Bbv12I GWGCWC 2 cut(s) 285, 925
BbvI GCAGC 7 cut(s) 699, 906, 1226, 1404, 1521, 1611, 1662
BccI CCATC 9 cut(s) 287, 368, 503, 539, 614, 713, 1004, 1121, 1767
BciT130I CCWGG 1 cut(s) 1752
BcnI CCSGG 1 cut(s) 1298
BcoDI GTCTC 2 cut(s) 656, 1454
BfaI CTAG 2 cut(s) 1581, 1890
BfmI CTRYAG 2 cut(s) 336, 1899
BfuAI ACCTGC 1 cut(s) 1906
BisI GCNGC 7 cut(s) 688, 895, 1215, 1418, 1535, 1600, 1676
BlsI GCNGC 7 cut(s) 689, 896, 1216, 1419, 1536, 1601, 1677
Bme1390I CCNGG 2 cut(s) 1298, 1752
Bme18I GGWCC 2 cut(s) 1293, 1443
BmgT120I GGNCC 4 cut(s) 1013, 1230, 1293, 1443
BmiI GGNNCC 2 cut(s) 1295, 1445
BmrFI CCNGG 2 cut(s) 1298, 1752
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 5 cut(s) 600, 968, 1387, 1690, 1786
BmuI ACTGGG 1 cut(s) 582
BoxI GACNNNNGTC 1 cut(s) 1441
BpiI GAAGAC 5 cut(s) 359, 870, 988, 1038, 1074
BplI GAGNNNNNCTC 2 cut(s) 983, 1015
BpmI CTGGAG 2 cut(s) 543, 1773
BpuEI CTTGAG 2 cut(s) 389, 1760
BpuMI CCSGG 1 cut(s) 1298
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 4 cut(s) 648, 654, 1223, 1296
Bsc4I CCNNNNNNNGG 3 cut(s) 1010, 1138, 1224
Bse1I ACTGG 3 cut(s) 181, 577, 879
Bse3DI GCAATG 1 cut(s) 865
BseBI CCWGG 1 cut(s) 1752
BseDI CCNNGG 4 cut(s) 648, 654, 1223, 1296
BseGI GGATG 7 cut(s) 97, 253, 379, 1129, 1402, 1705, 1735
BseLI CCNNNNNNNGG 3 cut(s) 1010, 1138, 1224
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 3 cut(s) 181, 577, 879
BseRI GAGGAG 2 cut(s) 244, 1466
BseSI GKGCMC 1 cut(s) 1580
BseXI GCAGC 7 cut(s) 699, 906, 1226, 1404, 1521, 1611, 1662
BseYI CCCAGC 1 cut(s) 1551
BshFI GGCC 8 cut(s) 647, 653, 740, 878, 1014, 1131, 1231, 1750
BsiHKAI GWGCWC 2 cut(s) 285, 925
BsiSI CCGG 1 cut(s) 1298
BslFI GGGAC 3 cut(s) 146, 1141, 1429
BslI CCNNNNNNNGG 3 cut(s) 1010, 1138, 1224
BsmAI GTCTC 2 cut(s) 656, 1454
BsmFI GGGAC 3 cut(s) 146, 1141, 1429
BsnI GGCC 8 cut(s) 647, 653, 740, 878, 1014, 1131, 1231, 1750
Bso31I GGTCTC 1 cut(s) 656
Bsp1286I GDGCHC 4 cut(s) 285, 925, 1258, 1580
Bsp143I GATC 4 cut(s) 1333, 1486, 1732, 1809
Bsp19I CCATGG 1 cut(s) 1223
BspACI CCGC 4 cut(s) 476, 848, 1051, 1537
BspANI GGCC 8 cut(s) 647, 653, 740, 878, 1014, 1131, 1231, 1750
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 1295, 1445
BspMAI CTGCAG 1 cut(s) 1903
BspMI ACCTGC 1 cut(s) 1906
BspPI GGATC 2 cut(s) 1494, 1817
BspTNI GGTCTC 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 865
BsrI ACTGG 3 cut(s) 181, 577, 879
BssECI CCNNGG 4 cut(s) 648, 654, 1223, 1296
BssMI GATC 4 cut(s) 1333, 1486, 1732, 1809
BssT1I CCWWGG 3 cut(s) 648, 654, 1223
Bst2UI CCWGG 1 cut(s) 1752
Bst4CI ACNGT 3 cut(s) 24, 319, 1005
Bst6I CTCTTC 3 cut(s) 458, 1296, 1305
BstAPI GCANNNNNTGC 1 cut(s) 1531
BstC8I GCNNGC 2 cut(s) 1532, 1705
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 1223
BstF5I GGATG 7 cut(s) 97, 253, 379, 1129, 1402, 1705, 1735
BstHHI GCGC 1 cut(s) 1407
BstKTI GATC 4 cut(s) 1336, 1489, 1735, 1812
BstMAI GTCTC 2 cut(s) 656, 1454
BstMBI GATC 4 cut(s) 1333, 1486, 1732, 1809
BstMWI GCNNNNNNNGC 2 cut(s) 527, 1531
BstNI CCWGG 1 cut(s) 1752
BstNSI RCATGY 3 cut(s) 758, 1115, 1534
BstPAI GACNNNNGTC 1 cut(s) 1441
BstSCI CCNGG 2 cut(s) 1296, 1750
BstSFI CTRYAG 2 cut(s) 336, 1899
BstSLI GKGCMC 1 cut(s) 1580
BstV1I GCAGC 7 cut(s) 699, 906, 1226, 1404, 1521, 1611, 1662
BstV2I GAAGAC 5 cut(s) 359, 870, 988, 1038, 1074
BstX2I RGATCY 1 cut(s) 1486
BstYI RGATCY 1 cut(s) 1486
BsuRI GGCC 8 cut(s) 647, 653, 740, 878, 1014, 1131, 1231, 1750
BtgI CCRYGG 1 cut(s) 1223
BtgZI GCGATG 1 cut(s) 1786
BtsCI GGATG 7 cut(s) 97, 253, 379, 1129, 1402, 1705, 1735
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 586, 1570
BveI ACCTGC 1 cut(s) 1906
Cac8I GCNNGC 2 cut(s) 1532, 1705
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 1 cut(s) 1407
Cfr13I GGNCC 4 cut(s) 1013, 1230, 1293, 1443
CseI GACGC 1 cut(s) 1446
Csp6I GTAC 4 cut(s) 491, 570, 1306, 1456
CspCI CAANNNNNGTGG 4 cut(s) 160, 195, 1631, 1666
CviQI GTAC 4 cut(s) 491, 570, 1306, 1456
DdeI CTNAG 1 cut(s) 396
DpnI GATC 4 cut(s) 1335, 1488, 1734, 1811
DpnII GATC 4 cut(s) 1333, 1486, 1732, 1809
Eam1104I CTCTTC 3 cut(s) 458, 1296, 1305
EarI CTCTTC 3 cut(s) 458, 1296, 1305
Ecl136II GAGCTC 2 cut(s) 283, 923
Eco130I CCWWGG 3 cut(s) 648, 654, 1223
Eco147I AGGCCT 1 cut(s) 1750
Eco24I GRGCYC 3 cut(s) 285, 925, 1258
Eco31I GGTCTC 1 cut(s) 656
Eco47I GGWCC 2 cut(s) 1293, 1443
Eco53kI GAGCTC 2 cut(s) 283, 923
Eco57I CTGAAG 1 cut(s) 1185
EcoICRI GAGCTC 2 cut(s) 283, 923
EcoO109I RGGNCCY 1 cut(s) 1230
EcoRI GAATTC 1 cut(s) 1383
EcoRII CCWGG 1 cut(s) 1750
EcoT14I CCWWGG 3 cut(s) 648, 654, 1223
EcoT22I ATGCAT 1 cut(s) 1402
EcoT38I GRGCYC 3 cut(s) 285, 925, 1258
ErhI CCWWGG 3 cut(s) 648, 654, 1223
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 3 cut(s) 146, 1141, 1429
FauI CCCGC 2 cut(s) 469, 1530
FauNDI CATATG 1 cut(s) 189
Fnu4HI GCNGC 7 cut(s) 688, 895, 1215, 1418, 1535, 1600, 1676
FokI GGATG 7 cut(s) 104, 260, 386, 1136, 1409, 1712, 1742
FriOI GRGCYC 3 cut(s) 285, 925, 1258
Fsp4HI GCNGC 7 cut(s) 688, 895, 1215, 1418, 1535, 1600, 1676
FspBI CTAG 2 cut(s) 1581, 1890
GlaI GCGC 1 cut(s) 1406
GluI GCNGC 7 cut(s) 688, 895, 1215, 1418, 1535, 1600, 1676
GsaI CCCAGC 1 cut(s) 1555
GsuI CTGGAG 2 cut(s) 543, 1773
HaeIII GGCC 8 cut(s) 647, 653, 740, 878, 1014, 1131, 1231, 1750
HapII CCGG 1 cut(s) 1298
HgaI GACGC 1 cut(s) 1446
HhaI GCGC 1 cut(s) 1407
Hin6I GCGC 1 cut(s) 1405
HinP1I GCGC 1 cut(s) 1405
HincII GTYRAC 2 cut(s) 331, 1906
HindII GTYRAC 2 cut(s) 331, 1906
HindIII AAGCTT 1 cut(s) 1367
HinfI GANTC 4 cut(s) 35, 332, 525, 1682
HpaII CCGG 1 cut(s) 1298
HphI GGTGA 5 cut(s) 494, 635, 993, 1373, 1620
Hpy166II GTNNAC 4 cut(s) 331, 1480, 1895, 1906
Hpy188I TCNGA 9 cut(s) 562, 596, 748, 784, 832, 937, 1009, 1060, 1428
Hpy188III TCNNGA 4 cut(s) 39, 368, 926, 1823
Hpy8I GTNNAC 4 cut(s) 331, 1480, 1895, 1906
HpyAV CCTTC 8 cut(s) 4, 67, 82, 637, 730, 884, 1195, 1492
HpyCH4III ACNGT 3 cut(s) 24, 319, 1005
HpyCH4IV ACGT 6 cut(s) 587, 600, 838, 1285, 1571, 1849
HpyCH4V TGCA 7 cut(s) 413, 591, 771, 858, 1400, 1599, 1901
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 1531
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 6 cut(s) 587, 600, 838, 1285, 1571, 1849
HspAI GCGC 1 cut(s) 1405
Kzo9I GATC 4 cut(s) 1333, 1486, 1732, 1809
LmnI GCTCC 5 cut(s) 280, 576, 920, 928, 1340
Lsp1109I GCAGC 7 cut(s) 699, 906, 1226, 1404, 1521, 1611, 1662
LweI GCATC 5 cut(s) 600, 968, 1387, 1690, 1786
MaeI CTAG 2 cut(s) 1581, 1890
MaeII ACGT 6 cut(s) 587, 600, 838, 1285, 1571, 1849
MalI GATC 4 cut(s) 1335, 1488, 1734, 1811
MboI GATC 4 cut(s) 1333, 1486, 1732, 1809
MflI RGATCY 1 cut(s) 1486
MhlI GDGCHC 4 cut(s) 285, 925, 1258, 1580
MluCI AATT 9 cut(s) 106, 363, 485, 931, 1184, 1192, 1383, 1619, 1866
MlyI GAGTC 2 cut(s) 326, 534
MmeI TCCRAC 3 cut(s) 6, 810, 1178
Mph1103I ATGCAT 1 cut(s) 1402
MseI TTAA 9 cut(s) 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865
MslI CAYNNNNRTG 1 cut(s) 543
MspI CCGG 1 cut(s) 1298
MspR9I CCNGG 2 cut(s) 1298, 1752
MvaI CCWGG 1 cut(s) 1752
MwoI GCNNNNNNNGC 2 cut(s) 527, 1531
NciI CCSGG 1 cut(s) 1298
NcoI CCATGG 1 cut(s) 1223
NdeI CATATG 1 cut(s) 189
NdeII GATC 4 cut(s) 1333, 1486, 1732, 1809
NlaIV GGNNCC 2 cut(s) 1295, 1445
NmeAIII GCCGAG 1 cut(s) 1303
NsiI ATGCAT 1 cut(s) 1402
NspI RCATGY 3 cut(s) 758, 1115, 1534
PaeI GCATGC 1 cut(s) 1534
PceI AGGCCT 1 cut(s) 1750
PciI ACATGT 1 cut(s) 754
PfeI GAWTC 2 cut(s) 35, 1682
PkrI GCNGC 7 cut(s) 689, 896, 1216, 1419, 1536, 1601, 1677
PleI GAGTC 2 cut(s) 326, 533
PpsI GAGTC 2 cut(s) 326, 533
PscI ACATGT 1 cut(s) 754
PshAI GACNNNNGTC 1 cut(s) 1441
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 2 cut(s) 285, 925
Psp1406I AACGTT 2 cut(s) 1571, 1849
Psp6I CCWGG 1 cut(s) 1750
PspFI CCCAGC 1 cut(s) 1551
PspGI CCWGG 1 cut(s) 1750
PspN4I GGNNCC 2 cut(s) 1295, 1445
PspPI GGNCC 4 cut(s) 1013, 1230, 1293, 1443
PstI CTGCAG 1 cut(s) 1903
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 1 cut(s) 1486
RsaI GTAC 4 cut(s) 492, 571, 1307, 1457
RsaNI GTAC 4 cut(s) 491, 570, 1306, 1456
RseI CAYNNNNRTG 1 cut(s) 543
SacI GAGCTC 2 cut(s) 285, 925
SaqAI TTAA 9 cut(s) 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865
SatI GCNGC 7 cut(s) 688, 895, 1215, 1418, 1535, 1600, 1676
Sau3AI GATC 4 cut(s) 1333, 1486, 1732, 1809
Sau96I GGNCC 4 cut(s) 1013, 1230, 1293, 1443
SchI GAGTC 2 cut(s) 326, 534
ScrFI CCNGG 2 cut(s) 1298, 1752
SduI GDGCHC 4 cut(s) 285, 925, 1258, 1580
SfaNI GCATC 5 cut(s) 600, 968, 1387, 1690, 1786
SfcI CTRYAG 2 cut(s) 336, 1899
SinI GGWCC 2 cut(s) 1293, 1443
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 368, 1739
SmoI CTYRAG 2 cut(s) 368, 1739
SphI GCATGC 1 cut(s) 1534
Sse9I AATT 9 cut(s) 106, 363, 485, 931, 1184, 1192, 1383, 1619, 1866
SseBI AGGCCT 1 cut(s) 1750
SsiI CCGC 4 cut(s) 476, 848, 1051, 1537
SspI AATATT 1 cut(s) 1546
SspMI CTAG 2 cut(s) 1581, 1890
SstI GAGCTC 2 cut(s) 285, 925
StuI AGGCCT 1 cut(s) 1750
StyD4I CCNGG 2 cut(s) 1296, 1750
StyI CCWWGG 3 cut(s) 648, 654, 1223
TaaI ACNGT 3 cut(s) 24, 319, 1005
TaiI ACGT 6 cut(s) 590, 603, 841, 1288, 1574, 1852
TasI AATT 9 cut(s) 106, 363, 485, 931, 1184, 1192, 1383, 1619, 1866
TfiI GAWTC 2 cut(s) 35, 1682
Tru1I TTAA 9 cut(s) 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865
Tru9I TTAA 9 cut(s) 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865
TscAI CASTG 2 cut(s) 586, 1570
TseI GCWGC 7 cut(s) 687, 894, 1214, 1417, 1534, 1599, 1675
TspDTI ATGAA 7 cut(s) 108, 206, 876, 1044, 1376, 1511, 1619
TspGWI ACGGA 2 cut(s) 295, 475
TspRI CASTG 2 cut(s) 586, 1570
VpaK11BI GGWCC 2 cut(s) 1293, 1443
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 3 cut(s) 106, 363, 1383
XceI RCATGY 3 cut(s) 758, 1115, 1534
XspI CTAG 2 cut(s) 1581, 1890
Zsp2I ATGCAT 1 cut(s) 1402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.