SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G41020 |
| fragaria_vesca | FvH4_3g31460 FvH4_3g31460 FvH4_3g31460 |
| malus_domestica | MD04G1037700.v1.1 |
| prunus_persica | Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1 |
| pyrus_communis | pycom04g03080 |
| rosa_chinensis | RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601 |
| rosa_laevigata | RLG00000002025 RLG00000022792 RLG00000035196 |
| rosa_multiflora | Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034 |
| rosa_roxburghii | Rroxscaffold_1G00022430 Rroxscaffold_6G00392510 |
| rosa_rugosa | Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100 |
| rosa_samantha | Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500 |
| rosa_wichuraiana | Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1906 |
| AciI | CCGC | 4 cut(s) | 476, 848, 1051, 1537 |
| AclI | AACGTT | 2 cut(s) | 1571, 1849 |
| AclWI | GGATC | 2 cut(s) | 1494, 1817 |
| AcsI | RAATTY | 3 cut(s) | 106, 363, 1383 |
| AcuI | CTGAAG | 1 cut(s) | 1185 |
| AfaI | GTAC | 4 cut(s) | 492, 571, 1307, 1457 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1010, 1138, 1224 |
| AflIII | ACRYGT | 1 cut(s) | 754 |
| AgsI | TTSAA | 9 cut(s) | 35, 101, 122, 885, 1189, 1271, 1508, 1715, 1871 |
| AjnI | CCWGG | 1 cut(s) | 1750 |
| AluBI | AGCT | 7 cut(s) | 283, 897, 923, 1343, 1369, 1648, 1695 |
| AluI | AGCT | 7 cut(s) | 283, 897, 923, 1343, 1369, 1648, 1695 |
| Alw21I | GWGCWC | 2 cut(s) | 285, 925 |
| Alw26I | GTCTC | 2 cut(s) | 656, 1454 |
| AlwI | GGATC | 2 cut(s) | 1494, 1817 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 788 |
| AoxI | GGCC | 8 cut(s) | 645, 651, 738, 876, 1012, 1129, 1229, 1748 |
| ApeKI | GCWGC | 7 cut(s) | 687, 894, 1214, 1417, 1534, 1599, 1675 |
| ApoI | RAATTY | 3 cut(s) | 106, 363, 1383 |
| AseI | ATTAAT | 1 cut(s) | 270 |
| AspLEI | GCGC | 1 cut(s) | 1407 |
| AspS9I | GGNCC | 4 cut(s) | 1013, 1230, 1293, 1443 |
| AsuC2I | CCSGG | 1 cut(s) | 1298 |
| AsuHPI | GGTGA | 5 cut(s) | 494, 635, 993, 1373, 1620 |
| AvaII | GGWCC | 2 cut(s) | 1293, 1443 |
| BaeGI | GKGCMC | 1 cut(s) | 1580 |
| BanII | GRGCYC | 3 cut(s) | 285, 925, 1258 |
| BbsI | GAAGAC | 5 cut(s) | 359, 870, 988, 1038, 1074 |
| Bbv12I | GWGCWC | 2 cut(s) | 285, 925 |
| BbvI | GCAGC | 7 cut(s) | 699, 906, 1226, 1404, 1521, 1611, 1662 |
| BccI | CCATC | 9 cut(s) | 287, 368, 503, 539, 614, 713, 1004, 1121, 1767 |
| BciT130I | CCWGG | 1 cut(s) | 1752 |
| BcnI | CCSGG | 1 cut(s) | 1298 |
| BcoDI | GTCTC | 2 cut(s) | 656, 1454 |
| BfaI | CTAG | 2 cut(s) | 1581, 1890 |
| BfmI | CTRYAG | 2 cut(s) | 336, 1899 |
| BfuAI | ACCTGC | 1 cut(s) | 1906 |
| BisI | GCNGC | 7 cut(s) | 688, 895, 1215, 1418, 1535, 1600, 1676 |
| BlsI | GCNGC | 7 cut(s) | 689, 896, 1216, 1419, 1536, 1601, 1677 |
| Bme1390I | CCNGG | 2 cut(s) | 1298, 1752 |
| Bme18I | GGWCC | 2 cut(s) | 1293, 1443 |
| BmgT120I | GGNCC | 4 cut(s) | 1013, 1230, 1293, 1443 |
| BmiI | GGNNCC | 2 cut(s) | 1295, 1445 |
| BmrFI | CCNGG | 2 cut(s) | 1298, 1752 |
| BmrI | ACTGGG | 1 cut(s) | 582 |
| BmsI | GCATC | 5 cut(s) | 600, 968, 1387, 1690, 1786 |
| BmuI | ACTGGG | 1 cut(s) | 582 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1441 |
| BpiI | GAAGAC | 5 cut(s) | 359, 870, 988, 1038, 1074 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 983, 1015 |
| BpmI | CTGGAG | 2 cut(s) | 543, 1773 |
| BpuEI | CTTGAG | 2 cut(s) | 389, 1760 |
| BpuMI | CCSGG | 1 cut(s) | 1298 |
| BsaI | GGTCTC | 1 cut(s) | 656 |
| BsaJI | CCNNGG | 4 cut(s) | 648, 654, 1223, 1296 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1010, 1138, 1224 |
| Bse1I | ACTGG | 3 cut(s) | 181, 577, 879 |
| Bse3DI | GCAATG | 1 cut(s) | 865 |
| BseBI | CCWGG | 1 cut(s) | 1752 |
| BseDI | CCNNGG | 4 cut(s) | 648, 654, 1223, 1296 |
| BseGI | GGATG | 7 cut(s) | 97, 253, 379, 1129, 1402, 1705, 1735 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1010, 1138, 1224 |
| BseMI | GCAATG | 1 cut(s) | 865 |
| BseMII | CTCAG | 1 cut(s) | 387 |
| BseNI | ACTGG | 3 cut(s) | 181, 577, 879 |
| BseRI | GAGGAG | 2 cut(s) | 244, 1466 |
| BseSI | GKGCMC | 1 cut(s) | 1580 |
| BseXI | GCAGC | 7 cut(s) | 699, 906, 1226, 1404, 1521, 1611, 1662 |
| BseYI | CCCAGC | 1 cut(s) | 1551 |
| BshFI | GGCC | 8 cut(s) | 647, 653, 740, 878, 1014, 1131, 1231, 1750 |
| BsiHKAI | GWGCWC | 2 cut(s) | 285, 925 |
| BsiSI | CCGG | 1 cut(s) | 1298 |
| BslFI | GGGAC | 3 cut(s) | 146, 1141, 1429 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1010, 1138, 1224 |
| BsmAI | GTCTC | 2 cut(s) | 656, 1454 |
| BsmFI | GGGAC | 3 cut(s) | 146, 1141, 1429 |
| BsnI | GGCC | 8 cut(s) | 647, 653, 740, 878, 1014, 1131, 1231, 1750 |
| Bso31I | GGTCTC | 1 cut(s) | 656 |
| Bsp1286I | GDGCHC | 4 cut(s) | 285, 925, 1258, 1580 |
| Bsp143I | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| Bsp19I | CCATGG | 1 cut(s) | 1223 |
| BspACI | CCGC | 4 cut(s) | 476, 848, 1051, 1537 |
| BspANI | GGCC | 8 cut(s) | 647, 653, 740, 878, 1014, 1131, 1231, 1750 |
| BspCNI | CTCAG | 1 cut(s) | 388 |
| BspLI | GGNNCC | 2 cut(s) | 1295, 1445 |
| BspMAI | CTGCAG | 1 cut(s) | 1903 |
| BspMI | ACCTGC | 1 cut(s) | 1906 |
| BspPI | GGATC | 2 cut(s) | 1494, 1817 |
| BspTNI | GGTCTC | 1 cut(s) | 656 |
| BsrDI | GCAATG | 1 cut(s) | 865 |
| BsrI | ACTGG | 3 cut(s) | 181, 577, 879 |
| BssECI | CCNNGG | 4 cut(s) | 648, 654, 1223, 1296 |
| BssMI | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| BssT1I | CCWWGG | 3 cut(s) | 648, 654, 1223 |
| Bst2UI | CCWGG | 1 cut(s) | 1752 |
| Bst4CI | ACNGT | 3 cut(s) | 24, 319, 1005 |
| Bst6I | CTCTTC | 3 cut(s) | 458, 1296, 1305 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1531 |
| BstC8I | GCNNGC | 2 cut(s) | 1532, 1705 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstDSI | CCRYGG | 1 cut(s) | 1223 |
| BstF5I | GGATG | 7 cut(s) | 97, 253, 379, 1129, 1402, 1705, 1735 |
| BstHHI | GCGC | 1 cut(s) | 1407 |
| BstKTI | GATC | 4 cut(s) | 1336, 1489, 1735, 1812 |
| BstMAI | GTCTC | 2 cut(s) | 656, 1454 |
| BstMBI | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 527, 1531 |
| BstNI | CCWGG | 1 cut(s) | 1752 |
| BstNSI | RCATGY | 3 cut(s) | 758, 1115, 1534 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1441 |
| BstSCI | CCNGG | 2 cut(s) | 1296, 1750 |
| BstSFI | CTRYAG | 2 cut(s) | 336, 1899 |
| BstSLI | GKGCMC | 1 cut(s) | 1580 |
| BstV1I | GCAGC | 7 cut(s) | 699, 906, 1226, 1404, 1521, 1611, 1662 |
| BstV2I | GAAGAC | 5 cut(s) | 359, 870, 988, 1038, 1074 |
| BstX2I | RGATCY | 1 cut(s) | 1486 |
| BstYI | RGATCY | 1 cut(s) | 1486 |
| BsuRI | GGCC | 8 cut(s) | 647, 653, 740, 878, 1014, 1131, 1231, 1750 |
| BtgI | CCRYGG | 1 cut(s) | 1223 |
| BtgZI | GCGATG | 1 cut(s) | 1786 |
| BtsCI | GGATG | 7 cut(s) | 97, 253, 379, 1129, 1402, 1705, 1735 |
| BtsI | GCAGTG | 1 cut(s) | 586 |
| BtsIMutI | CAGTG | 2 cut(s) | 586, 1570 |
| BveI | ACCTGC | 1 cut(s) | 1906 |
| Cac8I | GCNNGC | 2 cut(s) | 1532, 1705 |
| CaiI | CAGNNNCTG | 1 cut(s) | 788 |
| CfoI | GCGC | 1 cut(s) | 1407 |
| Cfr13I | GGNCC | 4 cut(s) | 1013, 1230, 1293, 1443 |
| CseI | GACGC | 1 cut(s) | 1446 |
| Csp6I | GTAC | 4 cut(s) | 491, 570, 1306, 1456 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 160, 195, 1631, 1666 |
| CviQI | GTAC | 4 cut(s) | 491, 570, 1306, 1456 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| DpnI | GATC | 4 cut(s) | 1335, 1488, 1734, 1811 |
| DpnII | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| Eam1104I | CTCTTC | 3 cut(s) | 458, 1296, 1305 |
| EarI | CTCTTC | 3 cut(s) | 458, 1296, 1305 |
| Ecl136II | GAGCTC | 2 cut(s) | 283, 923 |
| Eco130I | CCWWGG | 3 cut(s) | 648, 654, 1223 |
| Eco147I | AGGCCT | 1 cut(s) | 1750 |
| Eco24I | GRGCYC | 3 cut(s) | 285, 925, 1258 |
| Eco31I | GGTCTC | 1 cut(s) | 656 |
| Eco47I | GGWCC | 2 cut(s) | 1293, 1443 |
| Eco53kI | GAGCTC | 2 cut(s) | 283, 923 |
| Eco57I | CTGAAG | 1 cut(s) | 1185 |
| EcoICRI | GAGCTC | 2 cut(s) | 283, 923 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1230 |
| EcoRI | GAATTC | 1 cut(s) | 1383 |
| EcoRII | CCWGG | 1 cut(s) | 1750 |
| EcoT14I | CCWWGG | 3 cut(s) | 648, 654, 1223 |
| EcoT22I | ATGCAT | 1 cut(s) | 1402 |
| EcoT38I | GRGCYC | 3 cut(s) | 285, 925, 1258 |
| ErhI | CCWWGG | 3 cut(s) | 648, 654, 1223 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 94, 126 |
| FaqI | GGGAC | 3 cut(s) | 146, 1141, 1429 |
| FauI | CCCGC | 2 cut(s) | 469, 1530 |
| FauNDI | CATATG | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 7 cut(s) | 688, 895, 1215, 1418, 1535, 1600, 1676 |
| FokI | GGATG | 7 cut(s) | 104, 260, 386, 1136, 1409, 1712, 1742 |
| FriOI | GRGCYC | 3 cut(s) | 285, 925, 1258 |
| Fsp4HI | GCNGC | 7 cut(s) | 688, 895, 1215, 1418, 1535, 1600, 1676 |
| FspBI | CTAG | 2 cut(s) | 1581, 1890 |
| GlaI | GCGC | 1 cut(s) | 1406 |
| GluI | GCNGC | 7 cut(s) | 688, 895, 1215, 1418, 1535, 1600, 1676 |
| GsaI | CCCAGC | 1 cut(s) | 1555 |
| GsuI | CTGGAG | 2 cut(s) | 543, 1773 |
| HaeIII | GGCC | 8 cut(s) | 647, 653, 740, 878, 1014, 1131, 1231, 1750 |
| HapII | CCGG | 1 cut(s) | 1298 |
| HgaI | GACGC | 1 cut(s) | 1446 |
| HhaI | GCGC | 1 cut(s) | 1407 |
| Hin6I | GCGC | 1 cut(s) | 1405 |
| HinP1I | GCGC | 1 cut(s) | 1405 |
| HincII | GTYRAC | 2 cut(s) | 331, 1906 |
| HindII | GTYRAC | 2 cut(s) | 331, 1906 |
| HindIII | AAGCTT | 1 cut(s) | 1367 |
| HinfI | GANTC | 4 cut(s) | 35, 332, 525, 1682 |
| HpaII | CCGG | 1 cut(s) | 1298 |
| HphI | GGTGA | 5 cut(s) | 494, 635, 993, 1373, 1620 |
| Hpy166II | GTNNAC | 4 cut(s) | 331, 1480, 1895, 1906 |
| Hpy188I | TCNGA | 9 cut(s) | 562, 596, 748, 784, 832, 937, 1009, 1060, 1428 |
| Hpy188III | TCNNGA | 4 cut(s) | 39, 368, 926, 1823 |
| Hpy8I | GTNNAC | 4 cut(s) | 331, 1480, 1895, 1906 |
| HpyAV | CCTTC | 8 cut(s) | 4, 67, 82, 637, 730, 884, 1195, 1492 |
| HpyCH4III | ACNGT | 3 cut(s) | 24, 319, 1005 |
| HpyCH4IV | ACGT | 6 cut(s) | 587, 600, 838, 1285, 1571, 1849 |
| HpyCH4V | TGCA | 7 cut(s) | 413, 591, 771, 858, 1400, 1599, 1901 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 527, 1531 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| HpySE526I | ACGT | 6 cut(s) | 587, 600, 838, 1285, 1571, 1849 |
| HspAI | GCGC | 1 cut(s) | 1405 |
| Kzo9I | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| LmnI | GCTCC | 5 cut(s) | 280, 576, 920, 928, 1340 |
| Lsp1109I | GCAGC | 7 cut(s) | 699, 906, 1226, 1404, 1521, 1611, 1662 |
| LweI | GCATC | 5 cut(s) | 600, 968, 1387, 1690, 1786 |
| MaeI | CTAG | 2 cut(s) | 1581, 1890 |
| MaeII | ACGT | 6 cut(s) | 587, 600, 838, 1285, 1571, 1849 |
| MalI | GATC | 4 cut(s) | 1335, 1488, 1734, 1811 |
| MboI | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| MflI | RGATCY | 1 cut(s) | 1486 |
| MhlI | GDGCHC | 4 cut(s) | 285, 925, 1258, 1580 |
| MluCI | AATT | 9 cut(s) | 106, 363, 485, 931, 1184, 1192, 1383, 1619, 1866 |
| MlyI | GAGTC | 2 cut(s) | 326, 534 |
| MmeI | TCCRAC | 3 cut(s) | 6, 810, 1178 |
| Mph1103I | ATGCAT | 1 cut(s) | 1402 |
| MseI | TTAA | 9 cut(s) | 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865 |
| MslI | CAYNNNNRTG | 1 cut(s) | 543 |
| MspI | CCGG | 1 cut(s) | 1298 |
| MspR9I | CCNGG | 2 cut(s) | 1298, 1752 |
| MvaI | CCWGG | 1 cut(s) | 1752 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 527, 1531 |
| NciI | CCSGG | 1 cut(s) | 1298 |
| NcoI | CCATGG | 1 cut(s) | 1223 |
| NdeI | CATATG | 1 cut(s) | 189 |
| NdeII | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| NlaIV | GGNNCC | 2 cut(s) | 1295, 1445 |
| NmeAIII | GCCGAG | 1 cut(s) | 1303 |
| NsiI | ATGCAT | 1 cut(s) | 1402 |
| NspI | RCATGY | 3 cut(s) | 758, 1115, 1534 |
| PaeI | GCATGC | 1 cut(s) | 1534 |
| PceI | AGGCCT | 1 cut(s) | 1750 |
| PciI | ACATGT | 1 cut(s) | 754 |
| PfeI | GAWTC | 2 cut(s) | 35, 1682 |
| PkrI | GCNGC | 7 cut(s) | 689, 896, 1216, 1419, 1536, 1601, 1677 |
| PleI | GAGTC | 2 cut(s) | 326, 533 |
| PpsI | GAGTC | 2 cut(s) | 326, 533 |
| PscI | ACATGT | 1 cut(s) | 754 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1441 |
| PshBI | ATTAAT | 1 cut(s) | 270 |
| Psp124BI | GAGCTC | 2 cut(s) | 285, 925 |
| Psp1406I | AACGTT | 2 cut(s) | 1571, 1849 |
| Psp6I | CCWGG | 1 cut(s) | 1750 |
| PspFI | CCCAGC | 1 cut(s) | 1551 |
| PspGI | CCWGG | 1 cut(s) | 1750 |
| PspN4I | GGNNCC | 2 cut(s) | 1295, 1445 |
| PspPI | GGNCC | 4 cut(s) | 1013, 1230, 1293, 1443 |
| PstI | CTGCAG | 1 cut(s) | 1903 |
| PstNI | CAGNNNCTG | 1 cut(s) | 788 |
| PsuI | RGATCY | 1 cut(s) | 1486 |
| RsaI | GTAC | 4 cut(s) | 492, 571, 1307, 1457 |
| RsaNI | GTAC | 4 cut(s) | 491, 570, 1306, 1456 |
| RseI | CAYNNNNRTG | 1 cut(s) | 543 |
| SacI | GAGCTC | 2 cut(s) | 285, 925 |
| SaqAI | TTAA | 9 cut(s) | 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865 |
| SatI | GCNGC | 7 cut(s) | 688, 895, 1215, 1418, 1535, 1600, 1676 |
| Sau3AI | GATC | 4 cut(s) | 1333, 1486, 1732, 1809 |
| Sau96I | GGNCC | 4 cut(s) | 1013, 1230, 1293, 1443 |
| SchI | GAGTC | 2 cut(s) | 326, 534 |
| ScrFI | CCNGG | 2 cut(s) | 1298, 1752 |
| SduI | GDGCHC | 4 cut(s) | 285, 925, 1258, 1580 |
| SfaNI | GCATC | 5 cut(s) | 600, 968, 1387, 1690, 1786 |
| SfcI | CTRYAG | 2 cut(s) | 336, 1899 |
| SinI | GGWCC | 2 cut(s) | 1293, 1443 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 543 |
| SmlI | CTYRAG | 2 cut(s) | 368, 1739 |
| SmoI | CTYRAG | 2 cut(s) | 368, 1739 |
| SphI | GCATGC | 1 cut(s) | 1534 |
| Sse9I | AATT | 9 cut(s) | 106, 363, 485, 931, 1184, 1192, 1383, 1619, 1866 |
| SseBI | AGGCCT | 1 cut(s) | 1750 |
| SsiI | CCGC | 4 cut(s) | 476, 848, 1051, 1537 |
| SspI | AATATT | 1 cut(s) | 1546 |
| SspMI | CTAG | 2 cut(s) | 1581, 1890 |
| SstI | GAGCTC | 2 cut(s) | 285, 925 |
| StuI | AGGCCT | 1 cut(s) | 1750 |
| StyD4I | CCNGG | 2 cut(s) | 1296, 1750 |
| StyI | CCWWGG | 3 cut(s) | 648, 654, 1223 |
| TaaI | ACNGT | 3 cut(s) | 24, 319, 1005 |
| TaiI | ACGT | 6 cut(s) | 590, 603, 841, 1288, 1574, 1852 |
| TasI | AATT | 9 cut(s) | 106, 363, 485, 931, 1184, 1192, 1383, 1619, 1866 |
| TfiI | GAWTC | 2 cut(s) | 35, 1682 |
| Tru1I | TTAA | 9 cut(s) | 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865 |
| Tru9I | TTAA | 9 cut(s) | 270, 672, 708, 792, 899, 1094, 1236, 1622, 1865 |
| TscAI | CASTG | 2 cut(s) | 586, 1570 |
| TseI | GCWGC | 7 cut(s) | 687, 894, 1214, 1417, 1534, 1599, 1675 |
| TspDTI | ATGAA | 7 cut(s) | 108, 206, 876, 1044, 1376, 1511, 1619 |
| TspGWI | ACGGA | 2 cut(s) | 295, 475 |
| TspRI | CASTG | 2 cut(s) | 586, 1570 |
| VpaK11BI | GGWCC | 2 cut(s) | 1293, 1443 |
| VspI | ATTAAT | 1 cut(s) | 270 |
| XapI | RAATTY | 3 cut(s) | 106, 363, 1383 |
| XceI | RCATGY | 3 cut(s) | 758, 1115, 1534 |
| XspI | CTAG | 2 cut(s) | 1581, 1890 |
| Zsp2I | ATGCAT | 1 cut(s) | 1402 |