SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G41020 |
| fragaria_vesca | FvH4_3g31460 FvH4_3g31460 FvH4_3g31460 |
| malus_domestica | MD04G1037700.v1.1 |
| prunus_persica | Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1 |
| pyrus_communis | pycom04g03080 |
| rosa_chinensis | RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601 |
| rosa_laevigata | RLG00000002025 RLG00000022792 RLG00000035196 |
| rosa_multiflora | Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034 |
| rosa_roxburghii | Rroxscaffold_1G00022430 Rroxscaffold_6G00392510 |
| rosa_rugosa | Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100 |
| rosa_samantha | Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500 |
| rosa_wichuraiana | Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2024, 2043 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1746 |
| AccB1I | GGYRCC | 1 cut(s) | 1526 |
| AccI | GTMKAC | 1 cut(s) | 30 |
| AciI | CCGC | 6 cut(s) | 621, 997, 1254, 1438, 1444, 1621 |
| AclI | AACGTT | 1 cut(s) | 1798 |
| AclWI | GGATC | 3 cut(s) | 1440, 1991, 2004 |
| AcsI | RAATTY | 7 cut(s) | 98, 284, 745, 886, 1329, 1785, 2091 |
| AcuI | CTGAAG | 1 cut(s) | 1191 |
| AfaI | GTAC | 7 cut(s) | 63, 633, 918, 987, 1089, 1216, 1403 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1152, 1476 |
| AgsI | TTSAA | 4 cut(s) | 229, 750, 1784, 1820 |
| AjiI | CACGTC | 1 cut(s) | 1250 |
| AjnI | CCWGG | 1 cut(s) | 1151 |
| Alw21I | GWGCWC | 1 cut(s) | 1867 |
| Alw26I | GTCTC | 2 cut(s) | 846, 1511 |
| AlwI | GGATC | 3 cut(s) | 1440, 1991, 2004 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1122 |
| AoxI | GGCC | 3 cut(s) | 174, 360, 1929 |
| ApeKI | GCWGC | 6 cut(s) | 67, 253, 439, 789, 1483, 1938 |
| ApoI | RAATTY | 7 cut(s) | 98, 284, 745, 886, 1329, 1785, 2091 |
| AspLEI | GCGC | 1 cut(s) | 1816 |
| AspS9I | GGNCC | 4 cut(s) | 174, 360, 1221, 1389 |
| AsuC2I | CCSGG | 1 cut(s) | 2001 |
| AsuHPI | GGTGA | 5 cut(s) | 635, 788, 1079, 1289, 1569 |
| AvaII | GGWCC | 2 cut(s) | 1221, 1389 |
| BaeGI | GKGCMC | 1 cut(s) | 1529 |
| BamHI | GGATCC | 1 cut(s) | 1996 |
| BanI | GGYRCC | 1 cut(s) | 1526 |
| BanII | GRGCYC | 1 cut(s) | 1186 |
| BbsI | GAAGAC | 4 cut(s) | 330, 611, 1020, 1382 |
| Bbv12I | GWGCWC | 1 cut(s) | 1867 |
| BbvI | GCAGC | 6 cut(s) | 79, 240, 426, 801, 1470, 1925 |
| BccI | CCATC | 5 cut(s) | 644, 680, 950, 1586, 1716 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1844, 1878 |
| BciT130I | CCWGG | 1 cut(s) | 1153 |
| BcnI | CCSGG | 1 cut(s) | 2001 |
| BcoDI | GTCTC | 2 cut(s) | 846, 1511 |
| BfaI | CTAG | 1 cut(s) | 1625 |
| BfmI | CTRYAG | 1 cut(s) | 2035 |
| BisI | GCNGC | 7 cut(s) | 68, 254, 440, 790, 1254, 1484, 1939 |
| BlsI | GCNGC | 7 cut(s) | 69, 255, 441, 791, 1255, 1485, 1940 |
| Bme1390I | CCNGG | 2 cut(s) | 1153, 2001 |
| Bme18I | GGWCC | 2 cut(s) | 1221, 1389 |
| BmgBI | CACGTC | 1 cut(s) | 1250 |
| BmgT120I | GGNCC | 4 cut(s) | 174, 360, 1221, 1389 |
| BmiI | GGNNCC | 5 cut(s) | 175, 361, 1391, 1528, 1998 |
| BmrFI | CCNGG | 2 cut(s) | 1153, 2001 |
| BpiI | GAAGAC | 4 cut(s) | 330, 611, 1020, 1382 |
| BpmI | CTGGAG | 5 cut(s) | 684, 870, 1174, 1315, 1722 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1266 |
| BpuEI | CTTGAG | 2 cut(s) | 789, 1709 |
| BpuMI | CCSGG | 1 cut(s) | 2001 |
| BsaJI | CCNNGG | 2 cut(s) | 1151, 1224 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1152, 1476 |
| Bse1I | ACTGG | 5 cut(s) | 775, 853, 1298, 1847, 1950 |
| Bse3DI | GCAATG | 2 cut(s) | 148, 492 |
| BseBI | CCWGG | 1 cut(s) | 1153 |
| BseDI | CCNNGG | 2 cut(s) | 1151, 1224 |
| BseGI | GGATG | 8 cut(s) | 538, 553, 1348, 1446, 1485, 1654, 1684, 1884 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1152, 1476 |
| BseMI | GCAATG | 2 cut(s) | 148, 492 |
| BseMII | CTCAG | 2 cut(s) | 457, 519 |
| BseNI | ACTGG | 5 cut(s) | 775, 853, 1298, 1847, 1950 |
| BseRI | GAGGAG | 1 cut(s) | 1412 |
| BseSI | GKGCMC | 1 cut(s) | 1529 |
| BseXI | GCAGC | 6 cut(s) | 79, 240, 426, 801, 1470, 1925 |
| BseYI | CCCAGC | 1 cut(s) | 1063 |
| BshFI | GGCC | 3 cut(s) | 176, 362, 1931 |
| BshNI | GGYRCC | 1 cut(s) | 1526 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1867 |
| BsiSI | CCGG | 1 cut(s) | 2001 |
| BslFI | GGGAC | 1 cut(s) | 1375 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1152, 1476 |
| BsmAI | GTCTC | 2 cut(s) | 846, 1511 |
| BsmBI | CGTCTC | 1 cut(s) | 846 |
| BsmFI | GGGAC | 1 cut(s) | 1375 |
| BsmI | GAATGC | 1 cut(s) | 679 |
| BsnI | GGCC | 3 cut(s) | 176, 362, 1931 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1186, 1529, 1867 |
| Bsp1407I | TGTACA | 1 cut(s) | 61 |
| Bsp143I | GATC | 3 cut(s) | 1432, 1681, 1996 |
| BspACI | CCGC | 6 cut(s) | 621, 997, 1254, 1438, 1444, 1621 |
| BspANI | GGCC | 3 cut(s) | 176, 362, 1931 |
| BspCNI | CTCAG | 2 cut(s) | 456, 520 |
| BspHI | TCATGA | 1 cut(s) | 714 |
| BspLI | GGNNCC | 5 cut(s) | 175, 361, 1391, 1528, 1998 |
| BspPI | GGATC | 3 cut(s) | 1440, 1991, 2004 |
| BspT107I | GGYRCC | 1 cut(s) | 1526 |
| BsrDI | GCAATG | 2 cut(s) | 148, 492 |
| BsrGI | TGTACA | 1 cut(s) | 61 |
| BsrI | ACTGG | 5 cut(s) | 775, 853, 1298, 1847, 1950 |
| BssECI | CCNNGG | 2 cut(s) | 1151, 1224 |
| BssMI | GATC | 3 cut(s) | 1432, 1681, 1996 |
| BssT1I | CCWWGG | 1 cut(s) | 1224 |
| Bst2UI | CCWGG | 1 cut(s) | 1153 |
| Bst4CI | ACNGT | 7 cut(s) | 35, 833, 951, 1124, 1841, 1893, 1958 |
| Bst6I | CTCTTC | 2 cut(s) | 506, 1224 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1480 |
| BstAUI | TGTACA | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 2 cut(s) | 258, 1446 |
| BstDEI | CTNAG | 6 cut(s) | 443, 528, 820, 1266, 1871, 2017 |
| BstF5I | GGATG | 8 cut(s) | 538, 553, 1348, 1446, 1485, 1654, 1684, 1884 |
| BstHHI | GCGC | 1 cut(s) | 1816 |
| BstKTI | GATC | 3 cut(s) | 1435, 1684, 1999 |
| BstMAI | GTCTC | 2 cut(s) | 846, 1511 |
| BstMBI | GATC | 3 cut(s) | 1432, 1681, 1996 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 494, 795, 1262, 1480, 1820, 1829 |
| BstNI | CCWGG | 1 cut(s) | 1153 |
| BstSCI | CCNGG | 2 cut(s) | 1151, 1999 |
| BstSFI | CTRYAG | 1 cut(s) | 2035 |
| BstSLI | GKGCMC | 1 cut(s) | 1529 |
| BstV1I | GCAGC | 6 cut(s) | 79, 240, 426, 801, 1470, 1925 |
| BstV2I | GAAGAC | 4 cut(s) | 330, 611, 1020, 1382 |
| BstX2I | RGATCY | 2 cut(s) | 1432, 1996 |
| BstYI | RGATCY | 2 cut(s) | 1432, 1996 |
| BsuRI | GGCC | 3 cut(s) | 176, 362, 1931 |
| BtgZI | GCGATG | 2 cut(s) | 1735, 1772 |
| BtrI | CACGTC | 1 cut(s) | 1250 |
| BtsCI | GGATG | 8 cut(s) | 538, 553, 1348, 1446, 1485, 1654, 1684, 1884 |
| BtsIMutI | CAGTG | 4 cut(s) | 947, 1519, 1604, 1957 |
| Cac8I | GCNNGC | 2 cut(s) | 258, 1446 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1122 |
| CciI | TCATGA | 1 cut(s) | 714 |
| CfoI | GCGC | 1 cut(s) | 1816 |
| Cfr13I | GGNCC | 4 cut(s) | 174, 360, 1221, 1389 |
| Csp6I | GTAC | 7 cut(s) | 62, 632, 917, 986, 1088, 1215, 1402 |
| CviQI | GTAC | 7 cut(s) | 62, 632, 917, 986, 1088, 1215, 1402 |
| DdeI | CTNAG | 6 cut(s) | 443, 528, 820, 1266, 1871, 2017 |
| DpnI | GATC | 3 cut(s) | 1434, 1683, 1998 |
| DpnII | GATC | 3 cut(s) | 1432, 1681, 1996 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1746 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1746 |
| Eam1104I | CTCTTC | 2 cut(s) | 506, 1224 |
| EarI | CTCTTC | 2 cut(s) | 506, 1224 |
| Eco130I | CCWWGG | 1 cut(s) | 1224 |
| Eco24I | GRGCYC | 1 cut(s) | 1186 |
| Eco47I | GGWCC | 2 cut(s) | 1221, 1389 |
| Eco57I | CTGAAG | 1 cut(s) | 1191 |
| EcoRI | GAATTC | 2 cut(s) | 745, 1329 |
| EcoRII | CCWGG | 1 cut(s) | 1151 |
| EcoT14I | CCWWGG | 1 cut(s) | 1224 |
| EcoT22I | ATGCAT | 2 cut(s) | 1348, 1887 |
| EcoT38I | GRGCYC | 1 cut(s) | 1186 |
| ErhI | CCWWGG | 1 cut(s) | 1224 |
| Esp3I | CGTCTC | 1 cut(s) | 846 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1005, 1037 |
| FaqI | GGGAC | 1 cut(s) | 1375 |
| FauI | CCCGC | 1 cut(s) | 1437 |
| FauNDI | CATATG | 1 cut(s) | 1188 |
| FblI | GTMKAC | 1 cut(s) | 30 |
| Fnu4HI | GCNGC | 7 cut(s) | 68, 254, 440, 790, 1254, 1484, 1939 |
| FokI | GGATG | 8 cut(s) | 545, 560, 1355, 1453, 1492, 1661, 1691, 1891 |
| FriOI | GRGCYC | 1 cut(s) | 1186 |
| Fsp4HI | GCNGC | 7 cut(s) | 68, 254, 440, 790, 1254, 1484, 1939 |
| FspBI | CTAG | 1 cut(s) | 1625 |
| GlaI | GCGC | 1 cut(s) | 1815 |
| GluI | GCNGC | 7 cut(s) | 68, 254, 440, 790, 1254, 1484, 1939 |
| GsaI | CCCAGC | 1 cut(s) | 1067 |
| GsuI | CTGGAG | 5 cut(s) | 684, 870, 1174, 1315, 1722 |
| HaeIII | GGCC | 3 cut(s) | 176, 362, 1931 |
| HapII | CCGG | 1 cut(s) | 2001 |
| HhaI | GCGC | 1 cut(s) | 1816 |
| Hin6I | GCGC | 1 cut(s) | 1814 |
| HinP1I | GCGC | 1 cut(s) | 1814 |
| HincII | GTYRAC | 1 cut(s) | 31 |
| HindII | GTYRAC | 1 cut(s) | 31 |
| HinfI | GANTC | 3 cut(s) | 626, 711, 1726 |
| HpaII | CCGG | 1 cut(s) | 2001 |
| HphI | GGTGA | 5 cut(s) | 635, 788, 1079, 1289, 1569 |
| Hpy166II | GTNNAC | 3 cut(s) | 31, 1426, 1630 |
| Hpy188I | TCNGA | 8 cut(s) | 74, 446, 529, 685, 1118, 1210, 1247, 1739 |
| Hpy188III | TCNNGA | 5 cut(s) | 715, 750, 806, 1701, 1808 |
| Hpy8I | GTNNAC | 3 cut(s) | 31, 1426, 1630 |
| Hpy99I | CGWCG | 2 cut(s) | 35, 833 |
| HpyCH4III | ACNGT | 7 cut(s) | 35, 833, 951, 1124, 1841, 1893, 1958 |
| HpyCH4IV | ACGT | 4 cut(s) | 1213, 1249, 1798, 1986 |
| HpyCH4V | TGCA | 9 cut(s) | 497, 763, 971, 1346, 1366, 1659, 1772, 1885, 1973 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 494, 795, 1262, 1480, 1820, 1829 |
| HpyF3I | CTNAG | 6 cut(s) | 443, 528, 820, 1266, 1871, 2017 |
| HpySE526I | ACGT | 4 cut(s) | 1213, 1249, 1798, 1986 |
| HspAI | GCGC | 1 cut(s) | 1814 |
| Kzo9I | GATC | 3 cut(s) | 1432, 1681, 1996 |
| LmnI | GCTCC | 1 cut(s) | 2082 |
| Lsp1109I | GCAGC | 6 cut(s) | 79, 240, 426, 801, 1470, 1925 |
| MaeI | CTAG | 1 cut(s) | 1625 |
| MaeII | ACGT | 4 cut(s) | 1213, 1249, 1798, 1986 |
| MaeIII | GTNAC | 6 cut(s) | 643, 1067, 1835, 1909, 1952, 1958 |
| MalI | GATC | 3 cut(s) | 1434, 1683, 1998 |
| MboI | GATC | 3 cut(s) | 1432, 1681, 1996 |
| MfeI | CAATTG | 2 cut(s) | 1093, 1568 |
| MflI | RGATCY | 2 cut(s) | 1432, 1996 |
| MhlI | GDGCHC | 3 cut(s) | 1186, 1529, 1867 |
| MmeI | TCCRAC | 2 cut(s) | 280, 1106 |
| Mph1103I | ATGCAT | 2 cut(s) | 1348, 1887 |
| MseI | TTAA | 5 cut(s) | 840, 1040, 1497, 1922, 2028 |
| MslI | CAYNNNNRTG | 2 cut(s) | 684, 1082 |
| MspA1I | CMGCKG | 3 cut(s) | 253, 439, 1063 |
| MspI | CCGG | 1 cut(s) | 2001 |
| MspR9I | CCNGG | 2 cut(s) | 1153, 2001 |
| MunI | CAATTG | 2 cut(s) | 1093, 1568 |
| Mva1269I | GAATGC | 1 cut(s) | 679 |
| MvaI | CCWGG | 1 cut(s) | 1153 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 494, 795, 1262, 1480, 1820, 1829 |
| NciI | CCSGG | 1 cut(s) | 2001 |
| NdeI | CATATG | 1 cut(s) | 1188 |
| NdeII | GATC | 3 cut(s) | 1432, 1681, 1996 |
| NlaIV | GGNNCC | 5 cut(s) | 175, 361, 1391, 1528, 1998 |
| NmuCI | GTSAC | 4 cut(s) | 1067, 1835, 1909, 1952 |
| NsiI | ATGCAT | 2 cut(s) | 1348, 1887 |
| PagI | TCATGA | 1 cut(s) | 714 |
| PctI | GAATGC | 1 cut(s) | 679 |
| PfeI | GAWTC | 3 cut(s) | 626, 711, 1726 |
| PfoI | TCCNGGA | 1 cut(s) | 1999 |
| PkrI | GCNGC | 7 cut(s) | 69, 255, 441, 791, 1255, 1485, 1940 |
| PsiI | TTATAA | 2 cut(s) | 2024, 2043 |
| Psp1406I | AACGTT | 1 cut(s) | 1798 |
| Psp6I | CCWGG | 1 cut(s) | 1151 |
| PspFI | CCCAGC | 1 cut(s) | 1063 |
| PspGI | CCWGG | 1 cut(s) | 1151 |
| PspN4I | GGNNCC | 5 cut(s) | 175, 361, 1391, 1528, 1998 |
| PspPI | GGNCC | 4 cut(s) | 174, 360, 1221, 1389 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1122 |
| PsuI | RGATCY | 2 cut(s) | 1432, 1996 |
| PvuII | CAGCTG | 3 cut(s) | 253, 439, 1063 |
| RsaI | GTAC | 7 cut(s) | 63, 633, 918, 987, 1089, 1216, 1403 |
| RsaNI | GTAC | 7 cut(s) | 62, 632, 917, 986, 1088, 1215, 1402 |
| RseI | CAYNNNNRTG | 2 cut(s) | 684, 1082 |
| SalI | GTCGAC | 1 cut(s) | 29 |
| SaqAI | TTAA | 5 cut(s) | 840, 1040, 1497, 1922, 2028 |
| SatI | GCNGC | 7 cut(s) | 68, 254, 440, 790, 1254, 1484, 1939 |
| Sau3AI | GATC | 3 cut(s) | 1432, 1681, 1996 |
| Sau96I | GGNCC | 4 cut(s) | 174, 360, 1221, 1389 |
| ScrFI | CCNGG | 2 cut(s) | 1153, 2001 |
| SduI | GDGCHC | 3 cut(s) | 1186, 1529, 1867 |
| SfcI | CTRYAG | 1 cut(s) | 2035 |
| SinI | GGWCC | 2 cut(s) | 1221, 1389 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 684, 1082 |
| SmlI | CTYRAG | 2 cut(s) | 804, 1688 |
| SmoI | CTYRAG | 2 cut(s) | 804, 1688 |
| SsiI | CCGC | 6 cut(s) | 621, 997, 1254, 1438, 1444, 1621 |
| SspI | AATATT | 2 cut(s) | 1466, 1495 |
| SspMI | CTAG | 1 cut(s) | 1625 |
| StyD4I | CCNGG | 2 cut(s) | 1151, 1999 |
| StyI | CCWWGG | 1 cut(s) | 1224 |
| TaaI | ACNGT | 7 cut(s) | 35, 833, 951, 1124, 1841, 1893, 1958 |
| TaiI | ACGT | 4 cut(s) | 1216, 1252, 1801, 1989 |
| TaqI | TCGA | 6 cut(s) | 30, 47, 233, 1180, 1260, 1854 |
| TatI | WGTACW | 2 cut(s) | 61, 916 |
| TauI | GCSGC | 1 cut(s) | 1256 |
| TfiI | GAWTC | 3 cut(s) | 626, 711, 1726 |
| Tru1I | TTAA | 5 cut(s) | 840, 1040, 1497, 1922, 2028 |
| Tru9I | TTAA | 5 cut(s) | 840, 1040, 1497, 1922, 2028 |
| TscAI | CASTG | 4 cut(s) | 954, 1519, 1604, 1957 |
| TseFI | GTSAC | 4 cut(s) | 1067, 1835, 1909, 1952 |
| TseI | GCWGC | 6 cut(s) | 67, 253, 439, 789, 1483, 1938 |
| Tsp45I | GTSAC | 4 cut(s) | 1067, 1835, 1909, 1952 |
| TspRI | CASTG | 4 cut(s) | 954, 1519, 1604, 1957 |
| VpaK11BI | GGWCC | 2 cut(s) | 1221, 1389 |
| XapI | RAATTY | 7 cut(s) | 98, 284, 745, 886, 1329, 1785, 2091 |
| XmiI | GTMKAC | 1 cut(s) | 30 |
| XspI | CTAG | 1 cut(s) | 1625 |
| Zsp2I | ATGCAT | 2 cut(s) | 1348, 1887 |