Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001772.1

Orthogroup ID

OG0002258

Physical Location & Seq

Genomic Coordinates Reverse (-)

24798 .. 25382

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001772.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggttggaaggatattggggaagccctaccatggaggccctttaagagtgtatatatattttcgagcccatatttttttcgaacgagcagaggaacgtacttggaccccagaagagtatgaagaggtaagaaagttccacaaagattgtggagctgattggagaaccttgggcgaaaaacttggcaaacatagaattcatgtcaaggatgcatgtcacagaataaaactgccaaatcagaagaaaggacgttggtcccaagaggagtatgagactttatttgatttagtgaacaaggatttgcgtatgaaaatttttgaagaaaagaaaaccaagcatggcatgctgcgagataatatttgctgggaggcaattagtgaaacgttgggctctagaaccaatgctgtttgcagcatgaagtggtatgaccaattaacatcacctttggcaaaccaaaagctgtgggctgatattgatgactatcgacttcttgatgctctcaatagcttggatgcttgctgtattgaagatgttgattgggatgatctgcttgagcataggctgggagaaatatgccaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

194

Amino Acids

23.06

Weight (kDa)

6.45

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41020
fragaria_vesca	FvH4_3g31460 FvH4_3g31460 FvH4_3g31460
malus_domestica	MD04G1037700.v1.1
prunus_persica	Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1
pyrus_communis	pycom04g03080
rosa_chinensis	RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601
rosa_laevigata	RLG00000002025 RLG00000022792 RLG00000035196
rosa_multiflora	Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022430 Rroxscaffold_6G00392510
rosa_rugosa	Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100
rosa_samantha	Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500
rosa_wichuraiana	Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	383
AcsI	RAATTY	2 cut(s)	195, 312
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	320, 527
AluBI	AGCT	3 cut(s)	155, 460, 507
AluI	AGCT	3 cut(s)	155, 460, 507
Alw26I	GTCTC	1 cut(s)	266
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	2 cut(s)	346, 411
ApoI	RAATTY	2 cut(s)	195, 312
AspS9I	GGNCC	3 cut(s)	38, 105, 255
AsuHPI	GGTGA	1 cut(s)	432
AsuII	TTCGAA	1 cut(s)	81
AvaII	GGWCC	2 cut(s)	105, 255
BanII	GRGCYC	2 cut(s)	70, 392
BbvI	GCAGC	2 cut(s)	333, 423
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	2 cut(s)	347, 412
BlsI	GCNGC	2 cut(s)	348, 413
Bme18I	GGWCC	2 cut(s)	105, 255
BmgT120I	GGNCC	3 cut(s)	38, 105, 255
BmiI	GGNNCC	2 cut(s)	107, 257
BmsI	GCATC	3 cut(s)	199, 484, 502
BoxI	GACNNNNGTC	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	31, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	31, 168
BseGI	GGATG	3 cut(s)	214, 517, 547
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	333, 423
BseYI	CCCAGC	2 cut(s)	363, 562
BshFI	GGCC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	70, 392
Bsp143I	GATC	1 cut(s)	544
Bsp19I	CCATGG	1 cut(s)	31
BspANI	GGCC	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	107, 257
BspT104I	TTCGAA	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	31, 168
BssMI	GATC	1 cut(s)	544
BssT1I	CCWWGG	2 cut(s)	31, 168
Bst6I	CTCTTC	2 cut(s)	108, 117
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	344, 517
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	3 cut(s)	214, 517, 547
BstKTI	GATC	1 cut(s)	547
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNSI	RCATGY	2 cut(s)	216, 346
BstPAI	GACNNNNGTC	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	333, 423
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	214, 517, 547
Cac8I	GCNNGC	2 cut(s)	344, 517
Cfr13I	GGNCC	3 cut(s)	38, 105, 255
Csp6I	GTAC	1 cut(s)	99
CspCI	CAANNNNNGTGG	6 cut(s)	128, 130, 163, 165, 443, 478
CviAII	CATG	6 cut(s)	32, 200, 213, 338, 343, 415
CviJI	RGCY	9 cut(s)	25, 39, 68, 155, 390, 460, 467, 507, 562
CviKI_1	RGCY	9 cut(s)	25, 39, 68, 155, 390, 460, 467, 507, 562
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	108, 117
EarI	CTCTTC	2 cut(s)	108, 117
Eco130I	CCWWGG	2 cut(s)	31, 168
Eco24I	GRGCYC	2 cut(s)	70, 392
Eco47I	GGWCC	2 cut(s)	105, 255
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	195
EcoT14I	CCWWGG	2 cut(s)	31, 168
EcoT22I	ATGCAT	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	70, 392
ErhI	CCWWGG	2 cut(s)	31, 168
FaeI	CATG	6 cut(s)	35, 203, 216, 341, 346, 418
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	6 cut(s)	31, 199, 212, 337, 342, 414
Fnu4HI	GCNGC	2 cut(s)	347, 412
FokI	GGATG	3 cut(s)	221, 524, 554
FriOI	GRGCYC	2 cut(s)	70, 392
Fsp4HI	GCNGC	2 cut(s)	347, 412
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	347, 412
GsaI	CCCAGC	2 cut(s)	367, 566
HaeIII	GGCC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	35, 203, 216, 341, 346, 418
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	393, 491
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	3
HpyCH4IV	ACGT	3 cut(s)	97, 250, 383
HpyCH4V	TGCA	2 cut(s)	212, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpySE526I	ACGT	3 cut(s)	97, 250, 383
Hsp92II	CATG	6 cut(s)	35, 203, 216, 341, 346, 418
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	123, 349, 548
Lsp1109I	GCAGC	2 cut(s)	333, 423
LweI	GCATC	3 cut(s)	199, 484, 502
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	3 cut(s)	97, 250, 383
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MboII	GAAGA	5 cut(s)	125, 134, 253, 332, 539
MhlI	GDGCHC	2 cut(s)	70, 392
MluCI	AATT	4 cut(s)	195, 312, 372, 431
MnlI	CCTC	5 cut(s)	29, 85, 118, 256, 361
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	2 cut(s)	44, 434
MwoI	GCNNNNNNNGC	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	544
NlaIII	CATG	6 cut(s)	35, 203, 216, 341, 346, 418
NlaIV	GGNNCC	2 cut(s)	107, 257
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	2 cut(s)	216, 346
NspV	TTCGAA	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	348, 413
PshAI	GACNNNNGTC	1 cut(s)	253
Psp1406I	AACGTT	1 cut(s)	383
PspFI	CCCAGC	2 cut(s)	363, 562
PspN4I	GGNNCC	2 cut(s)	107, 257
PspPI	GGNCC	3 cut(s)	38, 105, 255
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	44, 434
SatI	GCNGC	2 cut(s)	347, 412
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	3 cut(s)	38, 105, 255
SduI	GDGCHC	2 cut(s)	70, 392
SetI	ASST	9 cut(s)	100, 129, 157, 170, 253, 386, 445, 462, 509
SfaNI	GCATC	3 cut(s)	199, 484, 502
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	2 cut(s)	105, 255
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	4 cut(s)	195, 312, 372, 431
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	31, 168
TaiI	ACGT	3 cut(s)	100, 253, 386
TaqI	TCGA	3 cut(s)	64, 81, 484
TasI	AATT	4 cut(s)	195, 312, 372, 431
Tru1I	TTAA	2 cut(s)	44, 434
Tru9I	TTAA	2 cut(s)	44, 434
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	346, 411
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	4 cut(s)	135, 188, 323, 431
VpaK11BI	GGWCC	2 cut(s)	105, 255
XapI	RAATTY	2 cut(s)	195, 312
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	2 cut(s)	216, 346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XspI	CTAG	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.