Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002881.1

Orthogroup ID

OG0002258

Physical Location & Seq

Genomic Coordinates Reverse (-)

24036 .. 25088

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002881.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggcctcaacatggttctgcggtgtaaatgaaggcagcttaatagccccaaaaagcattggagctcctgacaattctgaaaaatcgacccctaaaaaagcatcaaaaagagtaagttttgctgatgatgtggaggtcttctcaccgtctgatggcccaaacgatgagcatgaagaccttgtaagaggtaaacggttttcagaagaagaagacaagattgtgaaagaggctgttttaagatacatagaggaacatgctttaggagatgatggcctcaacatggttctgcggtgtaaatcccaccctgaagtcaaaaaccacccagaattgaaaaattgttggaaggatattggggcagccttaccatggaggccctttaagagtgtatattatagagcccatattttgtttgaacgagccgagaaacgtatttggaccccggaagagtacgaagaggtaaagaagttccataaagattggggagccgattggagaactttgggcgataagcttggcaaacatagaattcatgtcaaggatgcatggcgcagaataaaactgccaaatcagaagaaaggacgctggtcccaagaggagtacgagactttatttgatttagtgaacatggatctgcgtatgaaggtttttgaagaaaagaaaaccaagcatggcatactgcgagataatatttgctgggaggcaatcagtgaaacgttgggcactagaaccaatgctgtttgcagcatgaagtggtataaccaattaacatcacctttggtaagccaaaagctgtgggctgacattgacgactatcggctgcttgatgctctcaatagcttggatgcttgctgtattgaagatgttgattgggatgatctgcttgagcataggcctggagatgtttgccaaaagcgatggcatcaaatggtcaaacatattggtcaccatgggctcaagtcctttcctgaacaagtggaagttttatctaaacattatcttgccgatttaattgaagcaagagaaatctatgctagtaaacctgcagttgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

350

Amino Acids

40.75

Weight (kDa)

6.23

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41020
fragaria_vesca	FvH4_3g31460 FvH4_3g31460 FvH4_3g31460
malus_domestica	MD04G1037700.v1.1
prunus_persica	Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1
pyrus_communis	pycom04g03080
rosa_chinensis	RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601
rosa_laevigata	RLG00000002025 RLG00000022792 RLG00000035196
rosa_multiflora	Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022430 Rroxscaffold_6G00392510
rosa_rugosa	Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100
rosa_samantha	Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500
rosa_wichuraiana	Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1048
AciI	CCGC	2 cut(s)	21, 289
AclI	AACGTT	1 cut(s)	713
AclWI	GGATC	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	449, 599
AfiI	CCNNNNNNNGG	4 cut(s)	12, 152, 280, 366
AgsI	TTSAA	5 cut(s)	331, 413, 650, 857, 1013
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	5 cut(s)	39, 65, 511, 790, 837
AluI	AGCT	5 cut(s)	39, 65, 511, 790, 837
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	596
AlwI	GGATC	1 cut(s)	636
AoxI	GGCC	5 cut(s)	3, 154, 271, 371, 890
ApeKI	GCWGC	4 cut(s)	36, 356, 741, 817
ApoI	RAATTY	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	4 cut(s)	155, 372, 435, 585
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	3 cut(s)	135, 762, 935
AvaII	GGWCC	2 cut(s)	435, 585
BaeGI	GKGCMC	1 cut(s)	722
BanII	GRGCYC	3 cut(s)	67, 400, 954
BbsI	GAAGAC	3 cut(s)	130, 180, 216
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	48, 368, 753, 804
BccI	CCATC	3 cut(s)	146, 263, 909
BciT130I	CCWGG	1 cut(s)	894
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	2 cut(s)	723, 1032
BfmI	CTRYAG	1 cut(s)	1041
BfuAI	ACCTGC	1 cut(s)	1048
BisI	GCNGC	4 cut(s)	37, 357, 742, 818
BlsI	GCNGC	4 cut(s)	38, 358, 743, 819
Bme1390I	CCNGG	2 cut(s)	440, 894
Bme18I	GGWCC	2 cut(s)	435, 585
BmgT120I	GGNCC	4 cut(s)	155, 372, 435, 585
BmiI	GGNNCC	3 cut(s)	437, 484, 587
BmrFI	CCNGG	2 cut(s)	440, 894
BmsI	GCATC	5 cut(s)	110, 529, 814, 832, 928
BoxI	GACNNNNGTC	1 cut(s)	583
BpiI	GAAGAC	3 cut(s)	130, 180, 216
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	902, 938
BpuMI	CCSGG	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	365, 438, 946
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 152, 280, 366
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	3 cut(s)	365, 438, 946
BseGI	GGATG	3 cut(s)	544, 847, 877
BseLI	CCNNNNNNNGG	4 cut(s)	12, 152, 280, 366
BseRI	GAGGAG	1 cut(s)	608
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	4 cut(s)	48, 368, 753, 804
BseYI	CCCAGC	1 cut(s)	693
BshFI	GGCC	5 cut(s)	5, 156, 273, 373, 892
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	4 cut(s)	12, 152, 280, 366
BsmAI	GTCTC	1 cut(s)	596
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	5 cut(s)	5, 156, 273, 373, 892
Bsp1286I	GDGCHC	4 cut(s)	67, 400, 722, 954
Bsp143I	GATC	2 cut(s)	628, 874
Bsp19I	CCATGG	2 cut(s)	365, 946
BspACI	CCGC	2 cut(s)	21, 289
BspANI	GGCC	5 cut(s)	5, 156, 273, 373, 892
BspLI	GGNNCC	3 cut(s)	437, 484, 587
BspMAI	CTGCAG	1 cut(s)	1045
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	1 cut(s)	636
BssECI	CCNNGG	3 cut(s)	365, 438, 946
BssMI	GATC	2 cut(s)	628, 874
BssT1I	CCWWGG	2 cut(s)	365, 946
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	2 cut(s)	147, 195
Bst6I	CTCTTC	2 cut(s)	438, 447
BstC8I	GCNNGC	1 cut(s)	847
BstDSI	CCRYGG	2 cut(s)	365, 946
BstEII	GGTNACC	1 cut(s)	941
BstF5I	GGATG	3 cut(s)	544, 847, 877
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	2 cut(s)	631, 877
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	2 cut(s)	628, 874
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	257
BstPAI	GACNNNNGTC	1 cut(s)	583
BstPI	GGTNACC	1 cut(s)	941
BstSCI	CCNGG	2 cut(s)	438, 892
BstSFI	CTRYAG	1 cut(s)	1041
BstSLI	GKGCMC	1 cut(s)	722
BstV1I	GCAGC	4 cut(s)	48, 368, 753, 804
BstV2I	GAAGAC	3 cut(s)	130, 180, 216
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	5 cut(s)	5, 156, 273, 373, 892
BtgI	CCRYGG	2 cut(s)	365, 946
BtgZI	GCGATG	1 cut(s)	928
BtsCI	GGATG	3 cut(s)	544, 847, 877
BtsIMutI	CAGTG	1 cut(s)	712
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	1 cut(s)	847
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	4 cut(s)	155, 372, 435, 585
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	448, 598
CspCI	CAANNNNNGTGG	2 cut(s)	773, 808
CviQI	GTAC	2 cut(s)	448, 598
DpnI	GATC	2 cut(s)	630, 876
DpnII	GATC	2 cut(s)	628, 874
Eam1104I	CTCTTC	2 cut(s)	438, 447
EarI	CTCTTC	2 cut(s)	438, 447
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	365, 946
Eco147I	AGGCCT	1 cut(s)	892
Eco24I	GRGCYC	3 cut(s)	67, 400, 954
Eco47I	GGWCC	2 cut(s)	435, 585
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	327
Eco91I	GGTNACC	1 cut(s)	941
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	372
EcoO65I	GGTNACC	1 cut(s)	941
EcoRI	GAATTC	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	892
EcoT14I	CCWWGG	2 cut(s)	365, 946
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	3 cut(s)	67, 400, 954
ErhI	CCWWGG	2 cut(s)	365, 946
FaqI	GGGAC	1 cut(s)	571
Fnu4HI	GCNGC	4 cut(s)	37, 357, 742, 818
FokI	GGATG	3 cut(s)	551, 854, 884
FriOI	GRGCYC	3 cut(s)	67, 400, 954
Fsp4HI	GCNGC	4 cut(s)	37, 357, 742, 818
FspBI	CTAG	2 cut(s)	723, 1032
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	4 cut(s)	37, 357, 742, 818
GsaI	CCCAGC	1 cut(s)	697
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	5 cut(s)	5, 156, 273, 373, 892
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	1 cut(s)	549
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	509
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	3 cut(s)	135, 762, 935
Hpy166II	GTNNAC	4 cut(s)	191, 622, 1037, 1048
Hpy188I	TCNGA	4 cut(s)	79, 151, 202, 570
Hpy188III	TCNNGA	2 cut(s)	68, 965
Hpy8I	GTNNAC	4 cut(s)	191, 622, 1037, 1048
HpyAV	CCTTC	3 cut(s)	26, 337, 634
HpyCH4III	ACNGT	2 cut(s)	147, 195
HpyCH4IV	ACGT	2 cut(s)	427, 713
HpyCH4V	TGCA	3 cut(s)	542, 741, 1043
HpySE526I	ACGT	2 cut(s)	427, 713
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	628, 874
LmnI	GCTCC	3 cut(s)	62, 70, 482
LpnPI	CCDG	9 cut(s)	81, 318, 336, 453, 568, 679, 879, 906, 978
Lsp1109I	GCAGC	4 cut(s)	48, 368, 753, 804
LweI	GCATC	5 cut(s)	110, 529, 814, 832, 928
MaeI	CTAG	2 cut(s)	723, 1032
MaeII	ACGT	2 cut(s)	427, 713
MaeIII	GTNAC	1 cut(s)	941
MalI	GATC	2 cut(s)	630, 876
MboI	GATC	2 cut(s)	628, 874
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	4 cut(s)	67, 400, 722, 954
MluCI	AATT	6 cut(s)	73, 326, 334, 525, 761, 1008
MmeI	TCCRAC	1 cut(s)	320
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	5 cut(s)	41, 236, 378, 764, 1007
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	440, 894
MvaI	CCWGG	1 cut(s)	894
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	2 cut(s)	365, 946
NdeII	GATC	2 cut(s)	628, 874
NlaIV	GGNNCC	3 cut(s)	437, 484, 587
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	941
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	892
PkrI	GCNGC	4 cut(s)	38, 358, 743, 819
PshAI	GACNNNNGTC	1 cut(s)	583
Psp124BI	GAGCTC	1 cut(s)	67
Psp1406I	AACGTT	1 cut(s)	713
Psp6I	CCWGG	1 cut(s)	892
PspEI	GGTNACC	1 cut(s)	941
PspFI	CCCAGC	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	3 cut(s)	437, 484, 587
PspPI	GGNCC	4 cut(s)	155, 372, 435, 585
PstI	CTGCAG	1 cut(s)	1045
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	2 cut(s)	449, 599
RsaNI	GTAC	2 cut(s)	448, 598
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	5 cut(s)	41, 236, 378, 764, 1007
SatI	GCNGC	4 cut(s)	37, 357, 742, 818
Sau3AI	GATC	2 cut(s)	628, 874
Sau96I	GGNCC	4 cut(s)	155, 372, 435, 585
ScrFI	CCNGG	2 cut(s)	440, 894
SduI	GDGCHC	4 cut(s)	67, 400, 722, 954
SfaNI	GCATC	5 cut(s)	110, 529, 814, 832, 928
SfcI	CTRYAG	1 cut(s)	1041
SinI	GGWCC	2 cut(s)	435, 585
SmlI	CTYRAG	2 cut(s)	881, 953
SmoI	CTYRAG	2 cut(s)	881, 953
Sse9I	AATT	6 cut(s)	73, 326, 334, 525, 761, 1008
SseBI	AGGCCT	1 cut(s)	892
SsiI	CCGC	2 cut(s)	21, 289
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	2 cut(s)	723, 1032
SstI	GAGCTC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	892
StyD4I	CCNGG	2 cut(s)	438, 892
StyI	CCWWGG	2 cut(s)	365, 946
TaaI	ACNGT	2 cut(s)	147, 195
TaiI	ACGT	2 cut(s)	430, 716
TaqI	TCGA	1 cut(s)	86
TasI	AATT	6 cut(s)	73, 326, 334, 525, 761, 1008
Tru1I	TTAA	5 cut(s)	41, 236, 378, 764, 1007
Tru9I	TTAA	5 cut(s)	41, 236, 378, 764, 1007
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	941
TseI	GCWGC	4 cut(s)	36, 356, 741, 817
Tsp45I	GTSAC	1 cut(s)	941
TspDTI	ATGAA	5 cut(s)	45, 186, 518, 653, 761
TspRI	CASTG	1 cut(s)	712
VpaK11BI	GGWCC	2 cut(s)	435, 585
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	2 cut(s)	723, 1032
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.