Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002258

Physical Location & Seq

Genomic Coordinates Reverse (-)

36781566 .. 36785397

Gene Structure 3832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGAGAGCAAAGAGCAGCTTGGAACCAACGGTAGCTTTGCTACATCTTGTTTCTCTATTATTGTTAACTTAGATCCTGCTGCAGAGCATTTTGACTACCCTGTGGCTTTAGATATCAGGGAGCTAATTAACTTGGATGATGTTATGGAGGAACTTGGACTGGGTACCAATGGAGGACTTATGTACTGCATGGAACACCTTGAAGATAATCTGGATGATTGGCTTGCAGATGGATTGGAGGATTACCTGGATGATGACTACTTAATTTTGGACTGCCCAGGTATGCATATGAGCATACGTGTTCCGTTGTCTTGTGGAAGTAATTATGTTTTGGATATGACTACTCTGACTATTATGAGGGCTCTTCCAAGAGAGGTTGACCCAGCAGTGTATAATATGCTTCATGAAGATCCAGGTTCAAAGTTTCTTAGTACTGATGGCAGTACAGGCAGCAAGGCAGAAGTGAATTATTTGGGACAGTTCTATCATCCTAATCTTGTTAAACTAATTGGCTATTGCTTGGAAGATGAGCAGTGCCTTTTGGTATATGAATTCTTGCCTCGAGCTGGTGGTGAGCTATTTGGGAGGATATATAGTGCTGGTAGATTTAGTGAAGTTGAGATCATAATTGATAGTAGAAAGTCTTTGACATCAAACATGGAAGATACGTCGTCGGTTTTATCAAGCGATAGCATGCATATTGGTCTTCTTGCTGCTGCTGCTCATGCAGCTGCAACAAATAGTCGGTTTACTATATTTTATAATCCAAGAGCAAGTCCTTCTGAATTTGTGATACCCCTGGCCAAGTATGTTAAAGCAGTCTATCATACACGTGTTTCTGTGGGAATGCGATTTAGGATGCTGTTTGAGACAGAAGAATCAAGTGTTCGCCGTTTTTGGGTTGCTTGTTTTGTTTCATGGGTACATTATCAGATTGCGTCTTTGGATGCTTTTATGATAAATAAGCTGCAATGTGTTACATTTTGCGGTTCTTATAATGCACAGAACTTGCAATCTTCAAATGTTTCAAATGGGCCTGCTGCTATGCTTCAAAGACATAGTTTACCTCATTCTCAGTCTCAGAATACTTTTCTCCAGAGCTTTCAAGAAAACCAAGCTCCTGCTTCTCAGCTGTTGCAACAACAGTTGCGTTATCATCCATATAATAATGATCAGAGGCAGCAGCAGCAGCATCAACAGCAGCAGCTTCAACAATCCCAGAATATGCACCAATTTTCTGTTCAGCAGCAGATTCCCAATGTAATGTCTTCTCTATCTAATTTTGCTACTCAAGGGGGAGATCAATTGAAGCAAGCTGCTGAGGCCCATGATACTGCAAAAGCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

449

Amino Acids

50.42

Weight (kDa)

4.93

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	20 - 94	6.4e-26	Conserved hypothetical ATP binding protein
ARF_AD	PF06507	263 - 299	1e-08	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41020
fragaria_vesca	FvH4_3g31460 FvH4_3g31460 FvH4_3g31460
malus_domestica	MD04G1037700.v1.1
prunus_persica	Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1
pyrus_communis	pycom04g03080
rosa_chinensis	RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601
rosa_laevigata	RLG00000002025 RLG00000022792 RLG00000035196
rosa_multiflora	Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022430 Rroxscaffold_6G00392510
rosa_rugosa	Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100
rosa_samantha	Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500
rosa_wichuraiana	Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	762, 996
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	1 cut(s)	987
AclWI	GGATC	2 cut(s)	68, 404
AcoI	YGGCCR	1 cut(s)	801
AcsI	RAATTY	2 cut(s)	551, 785
AcvI	CACGTG	1 cut(s)	833
AfaI	GTAC	5 cut(s)	166, 185, 433, 445, 924
AfiI	CCNNNNNNNGG	2 cut(s)	566, 898
AflIII	ACRYGT	3 cut(s)	298, 830, 832
AgsI	TTSAA	8 cut(s)	203, 420, 1020, 1029, 1052, 1106, 1211, 1309
AjnI	CCWGG	4 cut(s)	246, 277, 412, 798
AjuI	GAANNNNNNNTTGG	2 cut(s)	1224, 1256
Alw26I	GTCTC	2 cut(s)	863, 1083
AlwI	GGATC	2 cut(s)	68, 404
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	3 cut(s)	801, 1034, 1323
ApoI	RAATTY	2 cut(s)	551, 785
Asp718I	GGTACC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	1034, 1324
AsuHPI	GGTGA	1 cut(s)	584
AvaI	CYCGRG	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	803
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	364
BbrPI	CACGTG	1 cut(s)	833
BbsI	GAAGAC	2 cut(s)	698, 1260
BbvCI	CCTCAGC	1 cut(s)	1320
BccI	CCATC	2 cut(s)	224, 431
BceAI	ACGGC	1 cut(s)	876
BciT130I	CCWGG	4 cut(s)	248, 279, 414, 800
BclI	TGATCA	1 cut(s)	1171
BcoDI	GTCTC	2 cut(s)	863, 1083
BfmI	CTRYAG	1 cut(s)	81
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	4 cut(s)	248, 279, 414, 800
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	2 cut(s)	1034, 1324
BmiI	GGNNCC	2 cut(s)	25, 166
BmrFI	CCNGG	4 cut(s)	248, 279, 414, 800
BmrI	ACTGGG	1 cut(s)	170
BmsI	GCATC	3 cut(s)	849, 937, 1201
BmuI	ACTGGG	1 cut(s)	170
BpiI	GAAGAC	2 cut(s)	698, 1260
BpmI	CTGGAG	1 cut(s)	1079
Bpu10I	CCTNAGC	1 cut(s)	1320
BpuEI	CTTGAG	1 cut(s)	1275
BsaAI	YACGTR	2 cut(s)	299, 833
BsaJI	CCNNGG	2 cut(s)	277, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 898
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	977
BseBI	CCWGG	4 cut(s)	248, 279, 414, 800
BseDI	CCNNGG	2 cut(s)	277, 798
BseGI	GGATG	7 cut(s)	142, 220, 256, 487, 864, 952, 1156
BseLI	CCNNNNNNNGG	2 cut(s)	566, 898
BseMI	GCAATG	1 cut(s)	977
BseMII	CTCAG	4 cut(s)	1088, 1094, 1142, 1311
BseNI	ACTGG	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	382
BshFI	GGCC	3 cut(s)	803, 1036, 1325
BshNI	GGYRCC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	566, 898
BsmAI	GTCTC	2 cut(s)	863, 1083
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	3 cut(s)	803, 1036, 1325
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	5 cut(s)	73, 409, 621, 1171, 1300
BspACI	CCGC	1 cut(s)	987
BspANI	GGCC	3 cut(s)	803, 1036, 1325
BspCNI	CTCAG	4 cut(s)	1087, 1093, 1141, 1312
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	25, 166
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	68, 404
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	977
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	277, 798
BssMI	GATC	5 cut(s)	73, 409, 621, 1171, 1300
Bst2UI	CCWGG	4 cut(s)	248, 279, 414, 800
Bst4CI	ACNGT	3 cut(s)	32, 480, 1146
Bst6I	CTCTTC	1 cut(s)	369
BstBAI	YACGTR	2 cut(s)	299, 833
BstC8I	GCNNGC	4 cut(s)	225, 695, 1038, 1314
BstDEI	CTNAG	6 cut(s)	70, 428, 1074, 1080, 1128, 1320
BstF5I	GGATG	7 cut(s)	142, 220, 256, 487, 864, 952, 1156
BstKTI	GATC	5 cut(s)	76, 412, 624, 1174, 1303
BstMAI	GTCTC	2 cut(s)	863, 1083
BstMBI	GATC	5 cut(s)	73, 409, 621, 1171, 1300
BstMWI	GCNNNNNNNGC	8 cut(s)	447, 719, 725, 728, 1186, 1189, 1198, 1322
BstNI	CCWGG	4 cut(s)	248, 279, 414, 800
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	4 cut(s)	246, 277, 412, 798
BstSFI	CTRYAG	1 cut(s)	81
BstV2I	GAAGAC	2 cut(s)	698, 1260
BstX2I	RGATCY	2 cut(s)	73, 409
BstYI	RGATCY	2 cut(s)	73, 409
BsuRI	GGCC	3 cut(s)	803, 1036, 1325
BtsCI	GGATG	7 cut(s)	142, 220, 256, 487, 864, 952, 1156
BtsI	GCAGTG	2 cut(s)	393, 539
BtsIMutI	CAGTG	2 cut(s)	393, 539
Cac8I	GCNNGC	4 cut(s)	225, 695, 1038, 1314
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	1034, 1324
CseI	GACGC	1 cut(s)	927
Csp6I	GTAC	5 cut(s)	165, 184, 432, 444, 923
CviAII	CATG	7 cut(s)	190, 404, 658, 694, 725, 918, 1328
CviQI	GTAC	5 cut(s)	165, 184, 432, 444, 923
DdeI	CTNAG	6 cut(s)	70, 428, 1074, 1080, 1128, 1320
DpnI	GATC	5 cut(s)	75, 411, 623, 1173, 1302
DpnII	GATC	5 cut(s)	73, 409, 621, 1171, 1300
EaeI	YGGCCR	1 cut(s)	801
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	115
Eco72I	CACGTG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	561
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	4 cut(s)	246, 277, 412, 798
EcoRV	GATATC	1 cut(s)	115
EcoT22I	ATGCAT	2 cut(s)	288, 699
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	7 cut(s)	193, 407, 661, 697, 728, 921, 1331
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	7 cut(s)	189, 403, 657, 693, 724, 917, 1327
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	1171
FokI	GGATG	7 cut(s)	149, 227, 263, 474, 871, 959, 1143
FriOI	GRGCYC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	1079
HaeIII	GGCC	3 cut(s)	803, 1036, 1325
HgaI	GACGC	1 cut(s)	927
Hin1II	CATG	7 cut(s)	193, 407, 661, 697, 728, 921, 1331
HincII	GTYRAC	2 cut(s)	67, 379
HindII	GTYRAC	2 cut(s)	67, 379
HinfI	GANTC	2 cut(s)	878, 1252
HpaI	GTTAAC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	4 cut(s)	67, 379, 750, 1064
Hpy188I	TCNGA	5 cut(s)	348, 784, 933, 1083, 1176
Hpy188III	TCNNGA	4 cut(s)	212, 404, 1096, 1106
Hpy8I	GTNNAC	4 cut(s)	67, 379, 750, 1064
Hpy99I	CGWCG	2 cut(s)	673, 676
HpyAV	CCTTC	1 cut(s)	789
HpyCH4III	ACNGT	3 cut(s)	32, 480, 1146
HpyCH4IV	ACGT	3 cut(s)	298, 668, 832
HpyF10VI	GCNNNNNNNGC	8 cut(s)	447, 719, 725, 728, 1186, 1189, 1198, 1322
HpyF3I	CTNAG	6 cut(s)	70, 428, 1074, 1080, 1128, 1320
HpySE526I	ACGT	3 cut(s)	298, 668, 832
Hsp92II	CATG	7 cut(s)	193, 407, 661, 697, 728, 921, 1331
KpnI	GGTACC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	1171
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	73, 409, 621, 1171, 1300
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	121, 1123
LweI	GCATC	3 cut(s)	849, 937, 1201
MaeII	ACGT	3 cut(s)	298, 668, 832
MaeIII	GTNAC	1 cut(s)	976
MalI	GATC	5 cut(s)	75, 411, 623, 1173, 1302
MboI	GATC	5 cut(s)	73, 409, 621, 1171, 1300
MboII	GAAGA	9 cut(s)	215, 356, 419, 536, 674, 698, 887, 1008, 1260
MfeI	CAATTG	1 cut(s)	1304
MflI	RGATCY	2 cut(s)	73, 409
MhlI	GDGCHC	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	803
MluNI	TGGCCA	1 cut(s)	803
Mox20I	TGGCCA	1 cut(s)	803
Mph1103I	ATGCAT	2 cut(s)	288, 699
MscI	TGGCCA	1 cut(s)	803
MseI	TTAA	5 cut(s)	66, 129, 263, 501, 813
MslI	CAYNNNNRTG	1 cut(s)	831
Msp20I	TGGCCA	1 cut(s)	803
MspA1I	CMGCKG	2 cut(s)	731, 1132
MspR9I	CCNGG	4 cut(s)	248, 279, 414, 800
MunI	CAATTG	1 cut(s)	1304
Mva1269I	GAATGC	1 cut(s)	852
MvaI	CCWGG	4 cut(s)	248, 279, 414, 800
MwoI	GCNNNNNNNGC	8 cut(s)	447, 719, 725, 728, 1186, 1189, 1198, 1322
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	5 cut(s)	73, 409, 621, 1171, 1300
NlaIII	CATG	7 cut(s)	193, 407, 661, 697, 728, 921, 1331
NlaIV	GGNNCC	2 cut(s)	25, 166
NsiI	ATGCAT	2 cut(s)	288, 699
NspI	RCATGY	1 cut(s)	697
PaeI	GCATGC	1 cut(s)	697
PaeR7I	CTCGAG	1 cut(s)	561
PagI	TCATGA	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	878, 1252
PmaCI	CACGTG	1 cut(s)	833
PmlI	CACGTG	1 cut(s)	833
Ppu21I	YACGTR	2 cut(s)	299, 833
PsiI	TTATAA	2 cut(s)	762, 996
Psp6I	CCWGG	4 cut(s)	246, 277, 412, 798
PspCI	CACGTG	1 cut(s)	833
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	4 cut(s)	246, 277, 412, 798
PspN4I	GGNNCC	2 cut(s)	25, 166
PspPI	GGNCC	2 cut(s)	1034, 1324
PspXI	VCTCGAGB	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	73, 409
PvuII	CAGCTG	2 cut(s)	731, 1132
RsaI	GTAC	5 cut(s)	166, 185, 433, 445, 924
RsaNI	GTAC	5 cut(s)	165, 184, 432, 444, 923
RseI	CAYNNNNRTG	1 cut(s)	831
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	5 cut(s)	66, 129, 263, 501, 813
Sau3AI	GATC	5 cut(s)	73, 409, 621, 1171, 1300
Sau96I	GGNCC	2 cut(s)	1034, 1324
ScaI	AGTACT	1 cut(s)	433
ScrFI	CCNGG	4 cut(s)	248, 279, 414, 800
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	3 cut(s)	849, 937, 1201
SfcI	CTRYAG	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	561
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	561, 1290
SmoI	CTYRAG	2 cut(s)	561, 1290
SphI	GCATGC	1 cut(s)	697
SsiI	CCGC	1 cut(s)	987
StyD4I	CCNGG	4 cut(s)	246, 277, 412, 798
TaaI	ACNGT	3 cut(s)	32, 480, 1146
TaiI	ACGT	3 cut(s)	301, 671, 835
TaqI	TCGA	1 cut(s)	562
TatI	WGTACW	3 cut(s)	183, 431, 443
TfiI	GAWTC	2 cut(s)	878, 1252
Tru1I	TTAA	5 cut(s)	66, 129, 263, 501, 813
Tru9I	TTAA	5 cut(s)	66, 129, 263, 501, 813
TscAI	CASTG	2 cut(s)	393, 539
TspDTI	ATGAA	4 cut(s)	392, 420, 564, 906
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	393, 539
XapI	RAATTY	2 cut(s)	551, 785
XceI	RCATGY	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	433
Zsp2I	ATGCAT	2 cut(s)	288, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.