RchiOBHm_Chr7g0222761
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002258
Physical Location & Seq
Forward (+)
44420460 .. 44421876
1417 bp
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UTR
Exon/CDS
Intron
PRQ19941

Sequence Viewer

Length: 381 bp
ATGCTGCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACGTTGGGCACTAGAACCAATGCTGTTTGCAGCATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGGCTGCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGACCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCACCATGGGCTCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACGTTATCTTGCCGATTTAATTGAAGCAAGAGAAATCTATGCTAGTAAACCTGCAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

126

Amino Acids

14.6

Weight (kDa)

5.12

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AclI AACGTT 2 cut(s) 41, 319
AgsI TTSAA 2 cut(s) 185, 341
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 118, 165
AluI AGCT 2 cut(s) 118, 165
ApeKI GCWGC 3 cut(s) 4, 69, 145
AsuHPI GGTGA 2 cut(s) 90, 263
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 81, 132
BccI CCATC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 222
BfaI CTAG 2 cut(s) 51, 360
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 3 cut(s) 5, 70, 146
BlsI GCNGC 3 cut(s) 6, 71, 147
Bme1390I CCNGG 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 142, 160, 256
BpmI CTGGAG 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 230, 266
BsaJI CCNNGG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 2 cut(s) 175, 205
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 2 cut(s) 81, 132
BseYI CCCAGC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 50, 282
Bsp143I GATC 1 cut(s) 202
Bsp19I CCATGG 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 175
BstDSI CCRYGG 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 2 cut(s) 175, 205
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 222
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 81, 132
BtgI CCRYGG 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 2 cut(s) 175, 205
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 175
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviAII CATG 2 cut(s) 73, 275
CviJI RGCY 6 cut(s) 111, 118, 125, 145, 165, 280
CviKI_1 RGCY 6 cut(s) 111, 118, 125, 145, 165, 280
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 269
EcoO65I GGTNACC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 76, 278
FaiI YATR 6 cut(s) 74, 84, 216, 264, 276, 357
FatI CATG 2 cut(s) 72, 274
Fnu4HI GCNGC 3 cut(s) 5, 70, 146
FokI GGATG 2 cut(s) 182, 212
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 3 cut(s) 5, 70, 146
FspBI CTAG 2 cut(s) 51, 360
GluI GCNGC 3 cut(s) 5, 70, 146
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 243
Hin1II CATG 2 cut(s) 76, 278
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HphI GGTGA 2 cut(s) 90, 263
Hpy166II GTNNAC 2 cut(s) 365, 376
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 2 cut(s) 365, 376
HpyCH4IV ACGT 2 cut(s) 41, 319
HpyCH4V TGCA 2 cut(s) 69, 371
HpySE526I ACGT 2 cut(s) 41, 319
Hsp92II CATG 2 cut(s) 76, 278
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 7, 207, 234, 306
Lsp1109I GCAGC 2 cut(s) 81, 132
LweI GCATC 3 cut(s) 142, 160, 256
MaeI CTAG 2 cut(s) 51, 360
MaeII ACGT 2 cut(s) 41, 319
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 2 cut(s) 50, 282
MluCI AATT 2 cut(s) 89, 336
MnlI CCTC 1 cut(s) 19
MseI TTAA 2 cut(s) 92, 335
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 274
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 76, 278
NmuCI GTSAC 1 cut(s) 269
PkrI GCNGC 3 cut(s) 6, 71, 147
Psp1406I AACGTT 2 cut(s) 41, 319
Psp6I CCWGG 1 cut(s) 220
PspEI GGTNACC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 1 cut(s) 220
PstI CTGCAG 1 cut(s) 373
SaqAI TTAA 2 cut(s) 92, 335
SatI GCNGC 3 cut(s) 5, 70, 146
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 2 cut(s) 50, 282
SetI ASST 7 cut(s) 44, 103, 120, 167, 223, 322, 370
SfaNI GCATC 3 cut(s) 142, 160, 256
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 209, 281
SmoI CTYRAG 2 cut(s) 209, 281
Sse9I AATT 2 cut(s) 89, 336
SspI AATATT 1 cut(s) 16
SspMI CTAG 2 cut(s) 51, 360
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 274
TaiI ACGT 2 cut(s) 44, 322
TasI AATT 2 cut(s) 89, 336
Tru1I TTAA 2 cut(s) 92, 335
Tru9I TTAA 2 cut(s) 92, 335
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 4, 69, 145
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 1 cut(s) 40
XspI CTAG 2 cut(s) 51, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.