Rorug05G0312100
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002258
Physical Location & Seq
Forward (+)
36866947 .. 36869083
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0312100.1

Sequence Viewer

Length: 1293 bp
ATGACGAAGTCTACGGTTACCCAAAATGGTCCCAATCCAAAGAGCTTCAAGATCTGCAGGCTCTATTTCTGGCCACATTTGGCAACACCCACAAACCCTCTCAACGATTTCTTCATCCTTCCAATGAAGCTCTCTGTTCGCCCACTCTTCAGCCTCCTGCTACTCATTGTCTTCGCCGCCACTCTGAGCTGCCGAACCGCCGTGCGGCACAGTCTGAGCTTGATCGAGTTCGAGAAGAAGACACTCGTTCCGCCGCCGAAGCCAGTGCTCAATGCTACTCTGCTGAAATACGCTGCAGACGATGTGGGTGGAGCTCAAGCCAAGAAGGAAGTAGAGCAACTTCTGGACGGTAACTTTGCTAGTCTGGGGCGGTACCGGAGTTTCGCAACTTGGAGAAGGTTTAATCACCATGATGCCAGAGCAAGGACCTCTGCAGGCTATCCGGTAATGCTCCGCTCTCCTCAGTTCTATAGTTATTGGTTAGAGTTTCGGAGATTGTTGAGTGAATGGTCAAGAAACAGAAGGTTTCAGCCTGATATTATGTTGGATTTGGTTAGACTTGTGAAGAATCCGATTGATGGGAAAAATGGTACGGAGGGAAGTTCGGAAGAGAAGCGTTACTCGTCTTGTGCTGTGGTTGGGAACAGTGGGATTTTGTTGAAGGGTAATCATGGTGCATTGATTGATAGTCATGAGGTAGTTATTCGATTGAACAATGCGAGGATAGAGGGCTTTGTGGGAAAAGTTGGGTCGAAGACGAACATTTCGTTTGTAAATAGTAACATTTTGCATCTTTGTGCTAGGAGAAATGGTTGTTTTTGCCACCCTTATGGACAGAATGTGCCTATAATCATGTACATTTGTCAACCGGTGCATTTCTTTGATTACGCAATATGCAATGTGTCCCATAAAGCGCCTTTGCTTGTGACTGATCTTCGGTTGGATGTGCTGAGTGCAAGGATAGTGAAGTATTATTCGTTGAAACGGTTTGGGGAGGAGACGGGGAAGTCATTCGATGAATGGGGGGCTGCTCATGATGCTGCTATGTTCCATTACTCTTCTGGCATGCAAGCAATTATGCTTGCCTTGGGGATTTGTGACAAAGTTAGTGTATTTGGCTTTGGGAAGTCAGAGTCAGCTAAGCACCATTACCATACAAATCAAAAGGCTGAGCTTCGGTTGCACGATTATGAGGCCGAGTATGCTTTCTACCATGATTTAGTGGAGAGACCACAGGTAATCCCATTCTTTTCAGAAAAGTTCAAGATTCCTCCTGTGGTTATATATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

430

Amino Acids

48.86

Weight (kDa)

9.38

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 178 - 409 1e-36 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1006
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 456
AccI GTMKAC 1 cut(s) 11
AciI CCGC 7 cut(s) 177, 198, 205, 251, 254, 370, 454
AcoI YGGCCR 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 3 cut(s) 374, 592, 857
AfiI CCNNNNNNNGG 3 cut(s) 204, 423, 578
AgeI ACCGGT 1 cut(s) 868
AgsI TTSAA 5 cut(s) 49, 661, 712, 982, 1264
AluBI AGCT 7 cut(s) 45, 130, 189, 219, 314, 1139, 1174
AluI AGCT 7 cut(s) 45, 130, 189, 219, 314, 1139, 1174
Alw21I GWGCWC 2 cut(s) 270, 316
Alw26I GTCTC 2 cut(s) 992, 1222
AoxI GGCC 2 cut(s) 71, 1194
ApeKI GCWGC 4 cut(s) 189, 293, 1028, 1040
ArsI GACNNNNNNTTYG 4 cut(s) 338, 370, 748, 780
AsiGI ACCGGT 1 cut(s) 868
Asp700I GAANNNNTTC 1 cut(s) 1010
Asp718I GGTACC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 916
AspS9I GGNCC 2 cut(s) 29, 426
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 2 cut(s) 29, 426
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BalI TGGCCA 1 cut(s) 73
BanI GGYRCC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 316
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
BbsI GAAGAC 3 cut(s) 163, 245, 761
Bbv12I GWGCWC 2 cut(s) 270, 316
BbvI GCAGC 4 cut(s) 176, 280, 1015, 1027
BccI CCATC 1 cut(s) 572
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BcoDI GTCTC 2 cut(s) 992, 1222
BfaI CTAG 2 cut(s) 360, 801
BfmI CTRYAG 4 cut(s) 55, 294, 432, 469
BfoI RGCGCY 1 cut(s) 917
BglII AGATCT 1 cut(s) 51
BisI GCNGC 7 cut(s) 177, 190, 206, 254, 294, 1029, 1041
BlpI GCTNAGC 2 cut(s) 1140, 1170
BlsI GCNGC 7 cut(s) 178, 191, 207, 255, 295, 1030, 1042
Bme18I GGWCC 2 cut(s) 29, 426
BmgT120I GGNCC 2 cut(s) 29, 426
BmiI GGNNCC 2 cut(s) 31, 374
BmsI GCATC 3 cut(s) 403, 799, 1027
BpiI GAAGAC 3 cut(s) 163, 245, 761
Bpu1102I GCTNAGC 2 cut(s) 1140, 1170
BpuEI CTTGAG 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 1222
BsaJI CCNNGG 1 cut(s) 1086
BsaWI WCCGGW 3 cut(s) 375, 442, 868
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 423, 578
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 904
BseDI CCNNGG 1 cut(s) 1086
BseGI GGATG 2 cut(s) 114, 949
BseLI CCNNNNNNNGG 3 cut(s) 204, 423, 578
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 5 cut(s) 176, 206, 476, 941, 1161
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 2 cut(s) 450, 1010
BseXI GCAGC 4 cut(s) 176, 280, 1015, 1027
BshFI GGCC 2 cut(s) 73, 1196
BshNI GGYRCC 1 cut(s) 372
BshTI ACCGGT 1 cut(s) 868
BsiHKAI GWGCWC 2 cut(s) 270, 316
BsiSI CCGG 3 cut(s) 376, 443, 869
BslFI GGGAC 2 cut(s) 15, 889
BslI CCNNNNNNNGG 3 cut(s) 204, 423, 578
BsmAI GTCTC 2 cut(s) 992, 1222
BsmBI CGTCTC 1 cut(s) 992
BsmFI GGGAC 2 cut(s) 15, 889
BsnI GGCC 2 cut(s) 73, 1196
Bso31I GGTCTC 1 cut(s) 1222
Bsp1286I GDGCHC 2 cut(s) 270, 316
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 3 cut(s) 51, 222, 931
Bsp1720I GCTNAGC 2 cut(s) 1140, 1170
BspACI CCGC 7 cut(s) 177, 198, 205, 251, 254, 370, 454
BspANI GGCC 2 cut(s) 73, 1196
BspCNI CTCAG 5 cut(s) 177, 207, 475, 942, 1162
BspHI TCATGA 2 cut(s) 691, 1033
BspLI GGNNCC 2 cut(s) 31, 374
BspMAI CTGCAG 3 cut(s) 59, 298, 436
BspT107I GGYRCC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 1222
BsrBI CCGCTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 904
BsrFI RCCGGY 1 cut(s) 868
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 1 cut(s) 1086
BssMI GATC 3 cut(s) 51, 222, 931
BssT1I CCWWGG 1 cut(s) 1086
Bst4CI ACNGT 5 cut(s) 16, 212, 350, 647, 987
Bst6I CTCTTC 3 cut(s) 152, 603, 1063
BstAUI TGTACA 1 cut(s) 855
BstC8I GCNNGC 5 cut(s) 59, 436, 1067, 1071, 1083
BstDEI CTNAG 6 cut(s) 185, 215, 462, 950, 1140, 1170
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 2 cut(s) 114, 949
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 3 cut(s) 54, 225, 934
BstMAI GTCTC 2 cut(s) 992, 1222
BstMBI GATC 3 cut(s) 51, 222, 931
BstMWI GCNNNNNNNGC 4 cut(s) 259, 1037, 1180, 1202
BstNSI RCATGY 1 cut(s) 1069
BstPI GGTNACC 1 cut(s) 16
BstSFI CTRYAG 4 cut(s) 55, 294, 432, 469
BstV1I GCAGC 4 cut(s) 176, 280, 1015, 1027
BstV2I GAAGAC 3 cut(s) 163, 245, 761
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 830
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 2 cut(s) 73, 1196
BtsCI GGATG 2 cut(s) 114, 949
BtsIMutI CAGTG 2 cut(s) 270, 652
Cac8I GCNNGC 5 cut(s) 59, 436, 1067, 1071, 1083
CciI TCATGA 2 cut(s) 691, 1033
CfoI GCGC 1 cut(s) 916
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 29, 426
Csp6I GTAC 3 cut(s) 373, 591, 856
CspAI ACCGGT 1 cut(s) 868
CviAII CATG 7 cut(s) 410, 671, 692, 853, 1034, 1066, 1214
CviQI GTAC 3 cut(s) 373, 591, 856
DdeI CTNAG 6 cut(s) 185, 215, 462, 950, 1140, 1170
DpnI GATC 3 cut(s) 53, 224, 933
DpnII GATC 3 cut(s) 51, 222, 931
DrdI GACNNNNNNGTC 1 cut(s) 1006
DseDI GACNNNNNNGTC 1 cut(s) 1006
EaeI YGGCCR 1 cut(s) 71
Eam1104I CTCTTC 3 cut(s) 152, 603, 1063
EarI CTCTTC 3 cut(s) 152, 603, 1063
EciI GGCGGA 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 1086
Eco24I GRGCYC 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 1222
Eco47I GGWCC 2 cut(s) 29, 426
Eco53kI GAGCTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 133
Eco91I GGTNACC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 1086
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 1086
Esp3I CGTCTC 1 cut(s) 992
FaeI CATG 7 cut(s) 413, 674, 695, 856, 1037, 1069, 1217
FaqI GGGAC 2 cut(s) 15, 889
FatI CATG 7 cut(s) 409, 670, 691, 852, 1033, 1065, 1213
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 7 cut(s) 177, 190, 206, 254, 294, 1029, 1041
FokI GGATG 2 cut(s) 101, 956
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 7 cut(s) 177, 190, 206, 254, 294, 1029, 1041
FspBI CTAG 2 cut(s) 360, 801
GlaI GCGC 1 cut(s) 915
GluI GCNGC 7 cut(s) 177, 190, 206, 254, 294, 1029, 1041
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 2 cut(s) 73, 1196
HapII CCGG 3 cut(s) 376, 443, 869
HhaI GCGC 1 cut(s) 916
Hin1II CATG 7 cut(s) 413, 674, 695, 856, 1037, 1069, 1217
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 1 cut(s) 866
HindII GTYRAC 1 cut(s) 866
HinfI GANTC 3 cut(s) 568, 1133, 1267
HpaII CCGG 3 cut(s) 376, 443, 869
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 12, 866
Hpy188I TCNGA 7 cut(s) 186, 216, 492, 573, 607, 1132, 1255
Hpy188III TCNNGA 7 cut(s) 49, 232, 344, 513, 692, 1034, 1264
Hpy8I GTNNAC 2 cut(s) 12, 866
HpyAV CCTTC 5 cut(s) 128, 319, 390, 516, 655
HpyCH4III ACNGT 5 cut(s) 16, 212, 350, 647, 987
HpyF10VI GCNNNNNNNGC 4 cut(s) 259, 1037, 1180, 1202
HpyF3I CTNAG 6 cut(s) 185, 215, 462, 950, 1140, 1170
Hsp92II CATG 7 cut(s) 413, 674, 695, 856, 1037, 1069, 1217
HspAI GCGC 1 cut(s) 914
KpnI GGTACC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 51, 222, 931
LmnI GCTCC 2 cut(s) 311, 456
Lsp1109I GCAGC 4 cut(s) 176, 280, 1015, 1027
LweI GCATC 3 cut(s) 403, 799, 1027
MaeI CTAG 2 cut(s) 360, 801
MaeIII GTNAC 6 cut(s) 16, 350, 617, 779, 925, 1097
MalI GATC 3 cut(s) 53, 224, 933
MbiI CCGCTC 1 cut(s) 456
MboI GATC 3 cut(s) 51, 222, 931
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 2 cut(s) 270, 316
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 1 cut(s) 1074
MluNI TGGCCA 1 cut(s) 73
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 2 cut(s) 525, 921
Mox20I TGGCCA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 1010
MscI TGGCCA 1 cut(s) 73
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 4 cut(s) 411, 795, 828, 1188
Msp20I TGGCCA 1 cut(s) 73
MspI CCGG 3 cut(s) 376, 443, 869
MwoI GCNNNNNNNGC 4 cut(s) 259, 1037, 1180, 1202
NdeII GATC 3 cut(s) 51, 222, 931
NlaIII CATG 7 cut(s) 413, 674, 695, 856, 1037, 1069, 1217
NlaIV GGNNCC 2 cut(s) 31, 374
NmeAIII GCCGAG 1 cut(s) 1222
NmuCI GTSAC 2 cut(s) 925, 1097
NspI RCATGY 1 cut(s) 1069
PaeI GCATGC 1 cut(s) 1069
PagI TCATGA 2 cut(s) 691, 1033
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 764
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 2 cut(s) 568, 1267
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 868
PkrI GCNGC 7 cut(s) 178, 191, 207, 255, 295, 1030, 1042
PleI GAGTC 1 cut(s) 1141
PpsI GAGTC 1 cut(s) 1141
PpuMI RGGWCCY 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 426
PspEI GGTNACC 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 31, 374
PspPI GGNCC 2 cut(s) 29, 426
PspPPI RGGWCCY 1 cut(s) 426
PstI CTGCAG 3 cut(s) 59, 298, 436
PsuI RGATCY 1 cut(s) 51
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 3 cut(s) 374, 592, 857
RsaNI GTAC 3 cut(s) 373, 591, 856
RseI CAYNNNNRTG 4 cut(s) 411, 795, 828, 1188
SacI GAGCTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 7 cut(s) 177, 190, 206, 254, 294, 1029, 1041
Sau3AI GATC 3 cut(s) 51, 222, 931
Sau96I GGNCC 2 cut(s) 29, 426
SchI GAGTC 1 cut(s) 1142
SduI GDGCHC 2 cut(s) 270, 316
SfaNI GCATC 3 cut(s) 403, 799, 1027
SfcI CTRYAG 4 cut(s) 55, 294, 432, 469
SinI GGWCC 2 cut(s) 29, 426
SmiMI CAYNNNNRTG 4 cut(s) 411, 795, 828, 1188
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
SphI GCATGC 1 cut(s) 1069
Sse9I AATT 1 cut(s) 1074
SsiI CCGC 7 cut(s) 177, 198, 205, 251, 254, 370, 454
SspMI CTAG 2 cut(s) 360, 801
SstI GAGCTC 1 cut(s) 316
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 5 cut(s) 16, 212, 350, 647, 987
TaqI TCGA 5 cut(s) 225, 231, 706, 752, 1014
TasI AATT 1 cut(s) 1074
TatI WGTACW 1 cut(s) 855
TauI GCSGC 3 cut(s) 179, 208, 256
TfiI GAWTC 2 cut(s) 568, 1267
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 2 cut(s) 270, 652
TseFI GTSAC 2 cut(s) 925, 1097
TseI GCWGC 4 cut(s) 189, 293, 1028, 1040
Tsp45I GTSAC 2 cut(s) 925, 1097
TspDTI ATGAA 3 cut(s) 103, 140, 1032
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 2 cut(s) 270, 652
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 29, 426
XceI RCATGY 1 cut(s) 1069
XcmI CCANNNNNNNNNTGG 1 cut(s) 1058
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 1010
XspI CTAG 2 cut(s) 360, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.