Rh7DG351000
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002258
Physical Location & Seq
Forward (+)
46619642 .. 46620946
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG351000.1

Sequence Viewer

Length: 1218 bp
ATGGAGGCTGTTGATGTAGATGGTGGGAAAACAAGGAAGAAGAAGGCCAAGGCAAACACCCTTGTTAATGGAGAAGATAGCAGCATAAATGTGGAGGTTGTTAATGTAGAAGATGGGAAAAAAAGAAAGAAGGCCAAGTCAGAGAAACATGTTGTAGAAGATTGCAACAGAAAATCAGAGGCTGTTAATGTAGGAAATAGTAAGAAAAGGAAGAAGTCCAAGTCGGAGAAACGTGGTATTGCGGAGATTTGCAATGAAGACAAGAAAAAGGCCAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCACACCGTCTGATGGCCCAAACGATGAGCATGAAGACCTTGTAAGAGGTAAACGGTTTTCAGAAGAAGAAGACAAGACTGTGAAAGAGGCTGTTTTAAGATACATAGAGGAACATGCTTTAGGGGATGATGGCCTCAACATGGTTCTGCGGTGTAAATCCCACCCTGAAGTCAAAAACCACCCAGAATTGAAAAATTGTTGGAAGGATATTGGGGCAGCCTTACCATGGAGGCCCTTTAAGAGTGTATATTATAGAGCCCATATTTTGTTTGAACGAGCCGAGAAACGTATTTGGACCCCGGAAGAGTACGAAGAGGTAAAGAAGTTCCATAAAGATTGGGGAGCCGATTGGAGAACTTTGGGCGATAAGCTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAAACTGCCAAATCAGAAGAAAGGAAGCTGGTCCCAAGAGGAGTACGAGACTTTATTTGATTTAGTGAACATGGATCTGCGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATACTGCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACGTTGGGCACTAGAACCAATGCTGTTTGCAGCATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGGCTGCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCACCATGGGCTCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACATTATCTTGCCGATTTAATTGAAGCAAGAGAAATCTATGCTAGTAAACCTGCAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

405

Amino Acids

47.0

Weight (kDa)

7.61

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 200 - 258 6.3e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1213
AciI CCGC 2 cut(s) 242, 454
AclI AACGTT 1 cut(s) 878
AclWI GGATC 1 cut(s) 801
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 2 cut(s) 614, 764
AfiI CCNNNNNNNGG 3 cut(s) 317, 445, 531
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 5 cut(s) 496, 578, 815, 1022, 1178
AjnI CCWGG 1 cut(s) 1057
AluBI AGCT 4 cut(s) 676, 747, 955, 1002
AluI AGCT 4 cut(s) 676, 747, 955, 1002
Alw26I GTCTC 1 cut(s) 761
AlwI GGATC 1 cut(s) 801
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 7 cut(s) 45, 132, 270, 319, 436, 536, 1055
ApeKI GCWGC 4 cut(s) 81, 521, 906, 982
ApoI RAATTY 1 cut(s) 690
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 4 cut(s) 320, 537, 600, 750
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 927, 1100
AvaII GGWCC 2 cut(s) 600, 750
BaeGI GKGCMC 1 cut(s) 887
BanII GRGCYC 2 cut(s) 565, 1119
BbsI GAAGAC 4 cut(s) 264, 295, 345, 381
BbvI GCAGC 4 cut(s) 93, 533, 918, 969
BccI CCATC 5 cut(s) 14, 107, 311, 428, 1074
BciT130I CCWGG 1 cut(s) 1059
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 761
BfaI CTAG 2 cut(s) 888, 1197
BfmI CTRYAG 1 cut(s) 1206
BfuAI ACCTGC 1 cut(s) 1213
BisI GCNGC 4 cut(s) 82, 522, 907, 983
BlsI GCNGC 4 cut(s) 83, 523, 908, 984
Bme1390I CCNGG 2 cut(s) 605, 1059
Bme18I GGWCC 2 cut(s) 600, 750
BmgT120I GGNCC 4 cut(s) 320, 537, 600, 750
BmiI GGNNCC 3 cut(s) 602, 649, 752
BmrFI CCNGG 2 cut(s) 605, 1059
BmsI GCATC 4 cut(s) 694, 979, 997, 1093
BpiI GAAGAC 4 cut(s) 264, 295, 345, 381
BpmI CTGGAG 1 cut(s) 1080
BpuEI CTTGAG 2 cut(s) 1067, 1103
BpuMI CCSGG 1 cut(s) 605
BsaJI CCNNGG 4 cut(s) 48, 530, 603, 1111
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 445, 531
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 1059
BseDI CCNNGG 4 cut(s) 48, 530, 603, 1111
BseGI GGATG 4 cut(s) 436, 709, 1012, 1042
BseLI CCNNNNNNNGG 3 cut(s) 317, 445, 531
BseMI GCAATG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 773
BseSI GKGCMC 1 cut(s) 887
BseXI GCAGC 4 cut(s) 93, 533, 918, 969
BseYI CCCAGC 1 cut(s) 858
BshFI GGCC 7 cut(s) 47, 134, 272, 321, 438, 538, 1057
BsiSI CCGG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 3 cut(s) 317, 445, 531
BsmAI GTCTC 1 cut(s) 761
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 7 cut(s) 47, 134, 272, 321, 438, 538, 1057
Bsp1286I GDGCHC 3 cut(s) 565, 887, 1119
Bsp143I GATC 2 cut(s) 793, 1039
Bsp19I CCATGG 2 cut(s) 530, 1111
BspACI CCGC 2 cut(s) 242, 454
BspANI GGCC 7 cut(s) 47, 134, 272, 321, 438, 538, 1057
BspLI GGNNCC 3 cut(s) 602, 649, 752
BspMAI CTGCAG 1 cut(s) 1210
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 1 cut(s) 801
BsrDI GCAATG 1 cut(s) 259
BssECI CCNNGG 4 cut(s) 48, 530, 603, 1111
BssMI GATC 2 cut(s) 793, 1039
BssT1I CCWWGG 3 cut(s) 48, 530, 1111
Bst2UI CCWGG 1 cut(s) 1059
Bst4CI ACNGT 3 cut(s) 312, 360, 385
Bst6I CTCTTC 2 cut(s) 603, 612
BstC8I GCNNGC 1 cut(s) 1012
BstDSI CCRYGG 2 cut(s) 530, 1111
BstEII GGTNACC 1 cut(s) 1106
BstF5I GGATG 4 cut(s) 436, 709, 1012, 1042
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 2 cut(s) 796, 1042
BstMAI GTCTC 1 cut(s) 761
BstMBI GATC 2 cut(s) 793, 1039
BstNI CCWGG 1 cut(s) 1059
BstNSI RCATGY 2 cut(s) 152, 422
BstPI GGTNACC 1 cut(s) 1106
BstSCI CCNGG 2 cut(s) 603, 1057
BstSFI CTRYAG 1 cut(s) 1206
BstSLI GKGCMC 1 cut(s) 887
BstV1I GCAGC 4 cut(s) 93, 533, 918, 969
BstV2I GAAGAC 4 cut(s) 264, 295, 345, 381
BstX2I RGATCY 1 cut(s) 793
BstYI RGATCY 1 cut(s) 793
BsuRI GGCC 7 cut(s) 47, 134, 272, 321, 438, 538, 1057
BtgI CCRYGG 2 cut(s) 530, 1111
BtgZI GCGATG 1 cut(s) 1093
BtsCI GGATG 4 cut(s) 436, 709, 1012, 1042
BtsIMutI CAGTG 1 cut(s) 877
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 1 cut(s) 1012
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 714
Cfr13I GGNCC 4 cut(s) 320, 537, 600, 750
Csp6I GTAC 2 cut(s) 613, 763
CspCI CAANNNNNGTGG 2 cut(s) 938, 973
CviQI GTAC 2 cut(s) 613, 763
DpnI GATC 2 cut(s) 795, 1041
DpnII GATC 2 cut(s) 793, 1039
Eam1104I CTCTTC 2 cut(s) 603, 612
EarI CTCTTC 2 cut(s) 603, 612
Eco130I CCWWGG 3 cut(s) 48, 530, 1111
Eco147I AGGCCT 1 cut(s) 1057
Eco24I GRGCYC 2 cut(s) 565, 1119
Eco47I GGWCC 2 cut(s) 600, 750
Eco57I CTGAAG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 1106
EcoO109I RGGNCCY 1 cut(s) 537
EcoO65I GGTNACC 1 cut(s) 1106
EcoRI GAATTC 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 1057
EcoT14I CCWWGG 3 cut(s) 48, 530, 1111
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 2 cut(s) 565, 1119
ErhI CCWWGG 3 cut(s) 48, 530, 1111
FaqI GGGAC 1 cut(s) 736
Fnu4HI GCNGC 4 cut(s) 82, 522, 907, 983
FokI GGATG 4 cut(s) 443, 716, 1019, 1049
FriOI GRGCYC 2 cut(s) 565, 1119
Fsp4HI GCNGC 4 cut(s) 82, 522, 907, 983
FspBI CTAG 2 cut(s) 888, 1197
GlaI GCGC 1 cut(s) 713
GluI GCNGC 4 cut(s) 82, 522, 907, 983
GsaI CCCAGC 1 cut(s) 862
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 7 cut(s) 47, 134, 272, 321, 438, 538, 1057
HapII CCGG 1 cut(s) 605
HhaI GCGC 1 cut(s) 714
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HincII GTYRAC 1 cut(s) 1213
HindII GTYRAC 1 cut(s) 1213
HindIII AAGCTT 1 cut(s) 674
HpaII CCGG 1 cut(s) 605
HphI GGTGA 2 cut(s) 927, 1100
Hpy166II GTNNAC 4 cut(s) 356, 787, 1202, 1213
Hpy188I TCNGA 6 cut(s) 142, 178, 226, 316, 367, 735
Hpy188III TCNNGA 1 cut(s) 1130
Hpy8I GTNNAC 4 cut(s) 356, 787, 1202, 1213
HpyAV CCTTC 4 cut(s) 37, 124, 502, 799
HpyCH4III ACNGT 3 cut(s) 312, 360, 385
HpyCH4IV ACGT 3 cut(s) 232, 592, 878
HpyCH4V TGCA 5 cut(s) 165, 252, 707, 906, 1208
HpySE526I ACGT 3 cut(s) 232, 592, 878
HspAI GCGC 1 cut(s) 712
Kzo9I GATC 2 cut(s) 793, 1039
LmnI GCTCC 1 cut(s) 647
LpnPI CCDG 9 cut(s) 286, 483, 501, 618, 733, 844, 1044, 1071, 1143
Lsp1109I GCAGC 4 cut(s) 93, 533, 918, 969
LweI GCATC 4 cut(s) 694, 979, 997, 1093
MaeI CTAG 2 cut(s) 888, 1197
MaeII ACGT 3 cut(s) 232, 592, 878
MaeIII GTNAC 1 cut(s) 1106
MalI GATC 2 cut(s) 795, 1041
MboI GATC 2 cut(s) 793, 1039
MflI RGATCY 1 cut(s) 793
MhlI GDGCHC 3 cut(s) 565, 887, 1119
MluCI AATT 5 cut(s) 491, 499, 690, 926, 1173
MmeI TCCRAC 2 cut(s) 204, 485
Mph1103I ATGCAT 1 cut(s) 709
MseI TTAA 7 cut(s) 66, 102, 186, 401, 543, 929, 1172
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 605
MspR9I CCNGG 2 cut(s) 605, 1059
MvaI CCWGG 1 cut(s) 1059
NciI CCSGG 1 cut(s) 605
NcoI CCATGG 2 cut(s) 530, 1111
NdeII GATC 2 cut(s) 793, 1039
NlaIV GGNNCC 3 cut(s) 602, 649, 752
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 1 cut(s) 1106
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 2 cut(s) 152, 422
PceI AGGCCT 1 cut(s) 1057
PciI ACATGT 1 cut(s) 148
PkrI GCNGC 4 cut(s) 83, 523, 908, 984
PscI ACATGT 1 cut(s) 148
Psp1406I AACGTT 1 cut(s) 878
Psp6I CCWGG 1 cut(s) 1057
PspEI GGTNACC 1 cut(s) 1106
PspFI CCCAGC 1 cut(s) 858
PspGI CCWGG 1 cut(s) 1057
PspN4I GGNNCC 3 cut(s) 602, 649, 752
PspPI GGNCC 4 cut(s) 320, 537, 600, 750
PstI CTGCAG 1 cut(s) 1210
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 793
RsaI GTAC 2 cut(s) 614, 764
RsaNI GTAC 2 cut(s) 613, 763
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 7 cut(s) 66, 102, 186, 401, 543, 929, 1172
SatI GCNGC 4 cut(s) 82, 522, 907, 983
Sau3AI GATC 2 cut(s) 793, 1039
Sau96I GGNCC 4 cut(s) 320, 537, 600, 750
ScrFI CCNGG 2 cut(s) 605, 1059
SduI GDGCHC 3 cut(s) 565, 887, 1119
SfaNI GCATC 4 cut(s) 694, 979, 997, 1093
SfcI CTRYAG 1 cut(s) 1206
SinI GGWCC 2 cut(s) 600, 750
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 1046, 1118
SmoI CTYRAG 2 cut(s) 1046, 1118
Sse9I AATT 5 cut(s) 491, 499, 690, 926, 1173
SseBI AGGCCT 1 cut(s) 1057
SsiI CCGC 2 cut(s) 242, 454
SspI AATATT 1 cut(s) 853
SspMI CTAG 2 cut(s) 888, 1197
StuI AGGCCT 1 cut(s) 1057
StyD4I CCNGG 2 cut(s) 603, 1057
StyI CCWWGG 3 cut(s) 48, 530, 1111
TaaI ACNGT 3 cut(s) 312, 360, 385
TaiI ACGT 3 cut(s) 235, 595, 881
TasI AATT 5 cut(s) 491, 499, 690, 926, 1173
Tru1I TTAA 7 cut(s) 66, 102, 186, 401, 543, 929, 1172
Tru9I TTAA 7 cut(s) 66, 102, 186, 401, 543, 929, 1172
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 1 cut(s) 1106
TseI GCWGC 4 cut(s) 81, 521, 906, 982
Tsp45I GTSAC 1 cut(s) 1106
TspDTI ATGAA 5 cut(s) 270, 351, 683, 818, 926
TspRI CASTG 1 cut(s) 877
VpaK11BI GGWCC 2 cut(s) 600, 750
XapI RAATTY 1 cut(s) 690
XceI RCATGY 2 cut(s) 152, 422
XspI CTAG 2 cut(s) 888, 1197
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.