Rw5G035770
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002258
Physical Location & Seq
Forward (+)
62210134 .. 62212039
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035770.1

Sequence Viewer

Length: 1869 bp
ATGGGAAGGAAGGAGAGGACACCGTTGGAGTTTGAATCAGGAAAAGAGAAGAAAAAGCACAAGGAGAAAAGGAAGGAGAAAGCGAAGAAGGATGAACTTGAAAGAAATTCTTCCGTGCTTGAAGTCTGTGGGGACAAAATGGGCAAGGAAGTTGAGGGGCTGAAATATGACAAGACTGGTGGAAATCATATGAATAGTGGAGAAGAAGCCAATAAGAAAAAGAAAAGGAGGAGGGAAAAGGAGGGGGATGATATGGTAATAGATATGATTAATAAAAAGGAGCTCATAAATGATTGGGAGAAATCCGTTGGGAAAACTGTCCAGAAAGTTGACTCTACAGGTAGTGTAAAGAAGACACAAAAAATTCTTGAGGATGGAAAAGTAGATGTGGCAACTGAGTATGGAGATGTTGCACAAATAAACAACGAGGGAGGAAATAAAAAGAAAAAAGAGAAGAAACGGAAGAGGGAAAAAGCGGGTGGTGAATTGGTACAGAATATCACAAGTGATGGAATGGAGGCTGGAGTCGCAAGTAAGCGTTTAGATGGGCATATTGTGTCTGAAAATCGTACTGGGAGCAGTGAAACGTGCATCAGAAACATAAAGGCTGTTGATGTAGATGGTGAGAAAACAAGGAAGAAGAAGGCCAAGGCAGAGACCCTTGTTAATGGAGAAGTTAGCAGCAGAAATGTGGAGGTTGTTAATGTAGAAGATGGTAAAAAAAGAAAGAAGGCCAAGTCAGAGAAACATGTTGTAGAAGATTGCAACAGAAAATCAGAGGCTGTTAATGTAGGAAATAGTAAGAAAAGGAAGAAGTCCAAGTCGGAGAAACGTGGTATTGCGGAGGTTTGCAATGAAGACAAGAAAAAGGCCAGTTCAAGTAAAGGCAGCTTAATAGCCCCAAAAAGCATTGGAGCTCCTGACAATTCTGAAAAATCAACCCCTAAAAAAGCATCAAAAAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACTGTCTGATGGCCCAAATGATGAGCATGAAGACCTTGTAAGAGGTAAGCGGTTTTCAGAAGAAGAAGACAAGATTGTGAAAGTGGCTGTTTTTAGATACATAGAGGAACATGCTTTAGGGGATGATGGCCTCAACATGGTTCTGCGTTGTAAGTCCCACCCTGAAGTCAAAAACCACCCAGAATTGAAAAATTGTTGGAAGGATATTGGGGCAGCCTTACCATGGAGGCCCTTTAAGAGTGTATATTATAGAGCCCATATTTTGTTTGAACGAGCCGAGAAACGTATTTGGACCCCAGAAGAGTACGAAGAGGTAAAGAAGTTCCATAAAGATCGGGGAGCTGATTGGAGAACTTTGGGCGATAAGCTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAAGCTGCCAAATCAGAAGAAAGGACGCTGGTCCCAAGAGGAGTACGAGACTTTATTTGATTTAGTGAACATGGATCTGCGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATGCATGCGCAGATAATATTTGCTGGGGACAATCACATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGGCTGCTTGATTCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCATCATGGGATCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACGTTATCTAGCCGATTTAATTGAAGCAAGAGAAATCTATGCTAGTAAACCTGCAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

622

Amino Acids

71.23

Weight (kDa)

9.23

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 429 - 487 1.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1533
Acc36I ACCTGC 1 cut(s) 1864
AciI CCGC 3 cut(s) 476, 842, 1045
AclI AACGTT 1 cut(s) 1807
AclWI GGATC 2 cut(s) 1488, 1775
AcsI RAATTY 3 cut(s) 106, 363, 1377
AcuI CTGAAG 1 cut(s) 1179
AfaI GTAC 4 cut(s) 492, 571, 1301, 1451
AfiI CCNNNNNNNGG 2 cut(s) 1132, 1218
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 9 cut(s) 35, 101, 122, 879, 1183, 1265, 1502, 1673, 1829
AjnI CCWGG 1 cut(s) 1708
AluBI AGCT 8 cut(s) 283, 891, 917, 1337, 1363, 1411, 1606, 1653
AluI AGCT 8 cut(s) 283, 891, 917, 1337, 1363, 1411, 1606, 1653
Alw21I GWGCWC 2 cut(s) 285, 919
Alw26I GTCTC 2 cut(s) 650, 1448
AlwI GGATC 2 cut(s) 1488, 1775
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 7 cut(s) 645, 732, 870, 1006, 1123, 1223, 1706
ApeKI GCWGC 5 cut(s) 681, 888, 1208, 1411, 1633
ApoI RAATTY 3 cut(s) 106, 363, 1377
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 2 cut(s) 1401, 1534
AspS9I GGNCC 4 cut(s) 1007, 1224, 1287, 1437
AsuHPI GGTGA 3 cut(s) 494, 635, 1578
AvaII GGWCC 2 cut(s) 1287, 1437
BanII GRGCYC 3 cut(s) 285, 919, 1252
BbsI GAAGAC 5 cut(s) 359, 864, 982, 1032, 1068
Bbv12I GWGCWC 2 cut(s) 285, 919
BbvI GCAGC 5 cut(s) 693, 900, 1220, 1398, 1620
BccI CCATC 8 cut(s) 368, 503, 539, 614, 707, 998, 1115, 1725
BciT130I CCWGG 1 cut(s) 1710
BcoDI GTCTC 2 cut(s) 650, 1448
BfaI CTAG 2 cut(s) 1814, 1848
BfmI CTRYAG 2 cut(s) 336, 1857
BfuAI ACCTGC 1 cut(s) 1864
BisI GCNGC 5 cut(s) 682, 889, 1209, 1412, 1634
BlsI GCNGC 5 cut(s) 683, 890, 1210, 1413, 1635
Bme1390I CCNGG 1 cut(s) 1710
Bme18I GGWCC 2 cut(s) 1287, 1437
BmgT120I GGNCC 4 cut(s) 1007, 1224, 1287, 1437
BmiI GGNNCC 2 cut(s) 1289, 1439
BmrFI CCNGG 1 cut(s) 1710
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 5 cut(s) 600, 962, 1381, 1648, 1744
BmuI ACTGGG 1 cut(s) 582
BoxI GACNNNNGTC 1 cut(s) 1435
BpiI GAAGAC 5 cut(s) 359, 864, 982, 1032, 1068
BplI GAGNNNNNCTC 2 cut(s) 977, 1009
BpmI CTGGAG 2 cut(s) 543, 1731
BpuEI CTTGAG 2 cut(s) 389, 1718
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 648, 1217
Bsc4I CCNNNNNNNGG 2 cut(s) 1132, 1218
Bse1I ACTGG 3 cut(s) 181, 577, 873
Bse3DI GCAATG 1 cut(s) 859
BseBI CCWGG 1 cut(s) 1710
BseDI CCNNGG 2 cut(s) 648, 1217
BseGI GGATG 7 cut(s) 97, 253, 379, 1123, 1396, 1663, 1693
BseLI CCNNNNNNNGG 2 cut(s) 1132, 1218
BseMI GCAATG 1 cut(s) 859
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 3 cut(s) 181, 577, 873
BseRI GAGGAG 2 cut(s) 244, 1460
BseXI GCAGC 5 cut(s) 693, 900, 1220, 1398, 1620
BseYI CCCAGC 1 cut(s) 1547
BshFI GGCC 7 cut(s) 647, 734, 872, 1008, 1125, 1225, 1708
BsiHKAI GWGCWC 2 cut(s) 285, 919
BslFI GGGAC 4 cut(s) 146, 1135, 1423, 1565
BslI CCNNNNNNNGG 2 cut(s) 1132, 1218
BsmAI GTCTC 2 cut(s) 650, 1448
BsmFI GGGAC 4 cut(s) 146, 1135, 1423, 1565
BsnI GGCC 7 cut(s) 647, 734, 872, 1008, 1125, 1225, 1708
Bso31I GGTCTC 1 cut(s) 650
Bsp1286I GDGCHC 3 cut(s) 285, 919, 1252
Bsp143I GATC 4 cut(s) 1327, 1480, 1690, 1767
Bsp19I CCATGG 1 cut(s) 1217
BspACI CCGC 3 cut(s) 476, 842, 1045
BspANI GGCC 7 cut(s) 647, 734, 872, 1008, 1125, 1225, 1708
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 1289, 1439
BspMAI CTGCAG 1 cut(s) 1861
BspMI ACCTGC 1 cut(s) 1864
BspPI GGATC 2 cut(s) 1488, 1775
BspTNI GGTCTC 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 859
BsrI ACTGG 3 cut(s) 181, 577, 873
BssECI CCNNGG 2 cut(s) 648, 1217
BssMI GATC 4 cut(s) 1327, 1480, 1690, 1767
BssT1I CCWWGG 2 cut(s) 648, 1217
Bst2UI CCWGG 1 cut(s) 1710
Bst4CI ACNGT 3 cut(s) 24, 319, 999
Bst6I CTCTTC 3 cut(s) 458, 1290, 1299
BstAPI GCANNNNNTGC 1 cut(s) 1525
BstC8I GCNNGC 3 cut(s) 1526, 1530, 1663
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 1217
BstF5I GGATG 7 cut(s) 97, 253, 379, 1123, 1396, 1663, 1693
BstHHI GCGC 2 cut(s) 1401, 1534
BstKTI GATC 4 cut(s) 1330, 1483, 1693, 1770
BstMAI GTCTC 2 cut(s) 650, 1448
BstMBI GATC 4 cut(s) 1327, 1480, 1690, 1767
BstMWI GCNNNNNNNGC 2 cut(s) 527, 1525
BstNI CCWGG 1 cut(s) 1710
BstNSI RCATGY 4 cut(s) 752, 1109, 1528, 1532
BstPAI GACNNNNGTC 1 cut(s) 1435
BstSCI CCNGG 1 cut(s) 1708
BstSFI CTRYAG 2 cut(s) 336, 1857
BstV1I GCAGC 5 cut(s) 693, 900, 1220, 1398, 1620
BstV2I GAAGAC 5 cut(s) 359, 864, 982, 1032, 1068
BstX2I RGATCY 1 cut(s) 1480
BstYI RGATCY 1 cut(s) 1480
BsuRI GGCC 7 cut(s) 647, 734, 872, 1008, 1125, 1225, 1708
BtgI CCRYGG 1 cut(s) 1217
BtgZI GCGATG 1 cut(s) 1744
BtsCI GGATG 7 cut(s) 97, 253, 379, 1123, 1396, 1663, 1693
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 586, 995
BveI ACCTGC 1 cut(s) 1864
Cac8I GCNNGC 3 cut(s) 1526, 1530, 1663
CaiI CAGNNNCTG 1 cut(s) 782
CfoI GCGC 2 cut(s) 1401, 1534
Cfr13I GGNCC 4 cut(s) 1007, 1224, 1287, 1437
CseI GACGC 1 cut(s) 1440
Csp6I GTAC 4 cut(s) 491, 570, 1300, 1450
CspCI CAANNNNNGTGG 4 cut(s) 160, 195, 1589, 1624
CviQI GTAC 4 cut(s) 491, 570, 1300, 1450
DdeI CTNAG 1 cut(s) 396
DpnI GATC 4 cut(s) 1329, 1482, 1692, 1769
DpnII GATC 4 cut(s) 1327, 1480, 1690, 1767
Eam1104I CTCTTC 3 cut(s) 458, 1290, 1299
EarI CTCTTC 3 cut(s) 458, 1290, 1299
Ecl136II GAGCTC 2 cut(s) 283, 917
Eco130I CCWWGG 2 cut(s) 648, 1217
Eco147I AGGCCT 1 cut(s) 1708
Eco24I GRGCYC 3 cut(s) 285, 919, 1252
Eco31I GGTCTC 1 cut(s) 650
Eco47I GGWCC 2 cut(s) 1287, 1437
Eco53kI GAGCTC 2 cut(s) 283, 917
Eco57I CTGAAG 1 cut(s) 1179
EcoICRI GAGCTC 2 cut(s) 283, 917
EcoO109I RGGNCCY 1 cut(s) 1224
EcoRI GAATTC 1 cut(s) 1377
EcoRII CCWGG 1 cut(s) 1708
EcoT14I CCWWGG 2 cut(s) 648, 1217
EcoT22I ATGCAT 2 cut(s) 1396, 1530
EcoT38I GRGCYC 3 cut(s) 285, 919, 1252
ErhI CCWWGG 2 cut(s) 648, 1217
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 4 cut(s) 146, 1135, 1423, 1565
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 682, 889, 1209, 1412, 1634
FokI GGATG 7 cut(s) 104, 260, 386, 1130, 1403, 1670, 1700
FriOI GRGCYC 3 cut(s) 285, 919, 1252
Fsp4HI GCNGC 5 cut(s) 682, 889, 1209, 1412, 1634
FspBI CTAG 2 cut(s) 1814, 1848
FspI TGCGCA 1 cut(s) 1533
GlaI GCGC 2 cut(s) 1400, 1533
GluI GCNGC 5 cut(s) 682, 889, 1209, 1412, 1634
GsaI CCCAGC 1 cut(s) 1551
GsuI CTGGAG 2 cut(s) 543, 1731
HaeIII GGCC 7 cut(s) 647, 734, 872, 1008, 1125, 1225, 1708
HgaI GACGC 1 cut(s) 1440
HhaI GCGC 2 cut(s) 1401, 1534
Hin6I GCGC 2 cut(s) 1399, 1532
HinP1I GCGC 2 cut(s) 1399, 1532
HincII GTYRAC 2 cut(s) 331, 1864
HindII GTYRAC 2 cut(s) 331, 1864
HindIII AAGCTT 1 cut(s) 1361
HinfI GANTC 4 cut(s) 35, 332, 525, 1640
HphI GGTGA 3 cut(s) 494, 635, 1578
Hpy166II GTNNAC 4 cut(s) 331, 1474, 1853, 1864
Hpy188I TCNGA 9 cut(s) 562, 596, 742, 778, 826, 931, 1003, 1054, 1422
Hpy188III TCNNGA 5 cut(s) 39, 322, 368, 920, 1781
Hpy8I GTNNAC 4 cut(s) 331, 1474, 1853, 1864
HpyAV CCTTC 7 cut(s) 4, 67, 82, 637, 724, 1189, 1486
HpyCH4III ACNGT 3 cut(s) 24, 319, 999
HpyCH4IV ACGT 4 cut(s) 587, 832, 1279, 1807
HpyCH4V TGCA 7 cut(s) 413, 591, 765, 852, 1394, 1528, 1859
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 1525
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 4 cut(s) 587, 832, 1279, 1807
HspAI GCGC 2 cut(s) 1399, 1532
Kzo9I GATC 4 cut(s) 1327, 1480, 1690, 1767
LmnI GCTCC 5 cut(s) 280, 576, 914, 922, 1334
Lsp1109I GCAGC 5 cut(s) 693, 900, 1220, 1398, 1620
LweI GCATC 5 cut(s) 600, 962, 1381, 1648, 1744
MaeI CTAG 2 cut(s) 1814, 1848
MaeII ACGT 4 cut(s) 587, 832, 1279, 1807
MalI GATC 4 cut(s) 1329, 1482, 1692, 1769
MboI GATC 4 cut(s) 1327, 1480, 1690, 1767
MflI RGATCY 1 cut(s) 1480
MhlI GDGCHC 3 cut(s) 285, 919, 1252
MluCI AATT 9 cut(s) 106, 363, 485, 925, 1178, 1186, 1377, 1577, 1824
MlyI GAGTC 2 cut(s) 326, 534
MmeI TCCRAC 3 cut(s) 6, 804, 1172
Mph1103I ATGCAT 2 cut(s) 1396, 1530
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 8 cut(s) 270, 666, 702, 786, 893, 1230, 1580, 1823
MspR9I CCNGG 1 cut(s) 1710
MvaI CCWGG 1 cut(s) 1710
MwoI GCNNNNNNNGC 2 cut(s) 527, 1525
NcoI CCATGG 1 cut(s) 1217
NdeI CATATG 1 cut(s) 189
NdeII GATC 4 cut(s) 1327, 1480, 1690, 1767
NlaIV GGNNCC 2 cut(s) 1289, 1439
NmeAIII GCCGAG 1 cut(s) 1297
NsbI TGCGCA 1 cut(s) 1533
NsiI ATGCAT 2 cut(s) 1396, 1530
NspI RCATGY 4 cut(s) 752, 1109, 1528, 1532
PaeI GCATGC 2 cut(s) 1528, 1532
PceI AGGCCT 1 cut(s) 1708
PciI ACATGT 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 35, 1640
PkrI GCNGC 5 cut(s) 683, 890, 1210, 1413, 1635
PleI GAGTC 2 cut(s) 326, 533
PpsI GAGTC 2 cut(s) 326, 533
PscI ACATGT 1 cut(s) 748
PshAI GACNNNNGTC 1 cut(s) 1435
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 2 cut(s) 285, 919
Psp1406I AACGTT 1 cut(s) 1807
Psp6I CCWGG 1 cut(s) 1708
PspFI CCCAGC 1 cut(s) 1547
PspGI CCWGG 1 cut(s) 1708
PspN4I GGNNCC 2 cut(s) 1289, 1439
PspPI GGNCC 4 cut(s) 1007, 1224, 1287, 1437
PstI CTGCAG 1 cut(s) 1861
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 1480
RsaI GTAC 4 cut(s) 492, 571, 1301, 1451
RsaNI GTAC 4 cut(s) 491, 570, 1300, 1450
SacI GAGCTC 2 cut(s) 285, 919
SaqAI TTAA 8 cut(s) 270, 666, 702, 786, 893, 1230, 1580, 1823
SatI GCNGC 5 cut(s) 682, 889, 1209, 1412, 1634
Sau3AI GATC 4 cut(s) 1327, 1480, 1690, 1767
Sau96I GGNCC 4 cut(s) 1007, 1224, 1287, 1437
SchI GAGTC 2 cut(s) 326, 534
ScrFI CCNGG 1 cut(s) 1710
SduI GDGCHC 3 cut(s) 285, 919, 1252
SfaNI GCATC 5 cut(s) 600, 962, 1381, 1648, 1744
SfcI CTRYAG 2 cut(s) 336, 1857
SinI GGWCC 2 cut(s) 1287, 1437
SmlI CTYRAG 2 cut(s) 368, 1697
SmoI CTYRAG 2 cut(s) 368, 1697
SphI GCATGC 2 cut(s) 1528, 1532
Sse9I AATT 9 cut(s) 106, 363, 485, 925, 1178, 1186, 1377, 1577, 1824
SseBI AGGCCT 1 cut(s) 1708
SsiI CCGC 3 cut(s) 476, 842, 1045
SspI AATATT 1 cut(s) 1542
SspMI CTAG 2 cut(s) 1814, 1848
SstI GAGCTC 2 cut(s) 285, 919
StuI AGGCCT 1 cut(s) 1708
StyD4I CCNGG 1 cut(s) 1708
StyI CCWWGG 2 cut(s) 648, 1217
TaaI ACNGT 3 cut(s) 24, 319, 999
TaiI ACGT 4 cut(s) 590, 835, 1282, 1810
TasI AATT 9 cut(s) 106, 363, 485, 925, 1178, 1186, 1377, 1577, 1824
TfiI GAWTC 2 cut(s) 35, 1640
Tru1I TTAA 8 cut(s) 270, 666, 702, 786, 893, 1230, 1580, 1823
Tru9I TTAA 8 cut(s) 270, 666, 702, 786, 893, 1230, 1580, 1823
TscAI CASTG 2 cut(s) 586, 1002
TseI GCWGC 5 cut(s) 681, 888, 1208, 1411, 1633
TspDTI ATGAA 7 cut(s) 108, 206, 870, 1038, 1370, 1505, 1577
TspGWI ACGGA 3 cut(s) 103, 295, 475
TspRI CASTG 2 cut(s) 586, 1002
VpaK11BI GGWCC 2 cut(s) 1287, 1437
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 3 cut(s) 106, 363, 1377
XceI RCATGY 4 cut(s) 752, 1109, 1528, 1532
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 2 cut(s) 1814, 1848
Zsp2I ATGCAT 2 cut(s) 1396, 1530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.