Rorug07G0214100
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002119
Physical Location & Seq
Reverse (-)
18956744 .. 18958831
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0214100.1

Sequence Viewer

Length: 456 bp
ATGATTCTGATCAATGAGGTCAATTGTTTGGACTTGCCTAGACTAATTGATTGGTTGGTATTTCGACAAGGGAAGGAATGTGGATTTCAGGGGAGGACTAATAAGTTAGTTGATGGTTGCTACTCTTTCTGGCAGGGAAGTGCATTTGCATTATTACAAAGAATACCTTCAGTTAGTGAGGAGCAAATTGTGCTACCGGATGTGGGACACTGCACTTTGGATACCTCACACACTTCTACAACATCTCGTATATCTGAAGTGGACAACAGTTCTGAAGGGTTGAAGGTTCCCTTTCCAGTGAATTACAATGATATTGGATATGATTTTATCAACAGAAGTGTAGAAATGAAGCCGCTTTTCCATGCCATTGCATTGCAGCGGTACATACTTTTATGCACACAGATAGTTGTCTGTGAGAACATAAAGGAATTGCAATATGGAGGACTGGGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

151

Amino Acids

17.05

Weight (kDa)

5.27

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 3 - 135 1e-21 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 353, 379
AcuI CTGAAG 3 cut(s) 153, 276, 294
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 107
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 9
BfaI CTAG 1 cut(s) 39
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 2 cut(s) 353, 377
BlsI GCNGC 2 cut(s) 354, 378
BmiI GGNNCC 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 296, 450
Bse3DI GCAATG 2 cut(s) 366, 371
Bse8I GATNNNNATC 1 cut(s) 8
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 2 cut(s) 366, 371
BseNI ACTGG 2 cut(s) 296, 450
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 2 cut(s) 353, 379
BspLI GGNNCC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 366, 371
BsrI ACTGG 2 cut(s) 296, 450
BssMI GATC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 388
BsuI GTATCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 208, 303
Csp6I GTAC 1 cut(s) 382
CviAII CATG 1 cut(s) 362
CviJI RGCY 1 cut(s) 352
CviKI_1 RGCY 1 cut(s) 352
CviQI GTAC 1 cut(s) 382
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco57I CTGAAG 3 cut(s) 153, 276, 294
FaeI CATG 1 cut(s) 365
FaiI YATR 7 cut(s) 251, 321, 363, 386, 394, 422, 438
FalI AAGNNNNNCTT 4 cut(s) 151, 183, 275, 307
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 361
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 353, 377
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 353, 377
FspBI CTAG 1 cut(s) 39
GluI GCNGC 2 cut(s) 353, 377
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 365
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 9, 256, 274
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 4 cut(s) 67, 177, 269, 277
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 7 cut(s) 143, 149, 213, 371, 376, 396, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
Hsp92II CATG 1 cut(s) 365
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 74, 115, 119, 210, 309, 431
Lsp1109I GCAGC 1 cut(s) 388
MaeI CTAG 1 cut(s) 39
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MfeI CAATTG 1 cut(s) 22
MluCI AATT 5 cut(s) 22, 45, 186, 301, 428
MnlI CCTC 5 cut(s) 10, 87, 172, 235, 434
MroXI GAANNNNTTC 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 354, 378
PspN4I GGNNCC 1 cut(s) 288
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
SatI GCNGC 2 cut(s) 353, 377
Sau3AI GATC 1 cut(s) 9
SetI ASST 4 cut(s) 21, 169, 227, 288
Sse9I AATT 5 cut(s) 22, 45, 186, 301, 428
SsiI CCGC 2 cut(s) 353, 379
SspMI CTAG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 1 cut(s) 64
TasI AATT 5 cut(s) 22, 45, 186, 301, 428
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 2 cut(s) 215, 303
TseI GCWGC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 2 cut(s) 215, 303
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.