Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010302.1

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3193

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010302.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1028 bp

ataaggagcagatgaggatagtgagggaggcattgcacttgtctacggtcccctctactgttgcgtgccgcgatgtggagcagaagagggttctggagttctgcaagtcatgcatagagcaagagaaggccgggagtttatatgtatgcgggtgtcctgggaccggaaagtccttgtccatggagaaggtgaaacagcttttggtgaattgggcaggagagggtggatttcaggaaccggatgtgttggaattgaactgtacatcgcttacaaaaacttctgatattttcgctaagatacttggtaaataccaacctcaaaagaaagctaatggcactacctccctgcaacttcttcagaaattatattctcaaaagcctcagtcagatgggactaagatgatgttgataatagctgatgagttggattacttaatcactaaagaccgggcagtgctccatgaccttttcatgctcacaacatacccattctcaagatgtatacttttaggagtagcaaatgcaatcgacttagctgatcgttttgttccaaaacttcagtcattaaattgtaagcctatggttataacttttcgggcatactctaaggatcagattctcaagattctccaagagaggcttatggcactaccttacactgtttttcaaccacatgcattggagctttgtgccagaaaagttgctgctgcatctggagatatgaggaaagctctctgtatttccaggagtgcaattgagatgctggaagcagagttgagagaatctactgacaagttaaactcatcaacagcagagaatccattctctgagcaacagacagctccagctcttgctctgttgaaaaaacaggagattgatattgtgagaattgatcacatggccattgctttgtcaaagacattcaagtcaccagtagtggataccatacaatgtcttcctcaacatcaacaggtaaccctcatgcaagtattgtattcagttgtactagtgcatagcaggagtatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

341

Amino Acids

38.13

Weight (kDa)

8.67

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	586
AasI	GACNNNNNNGTC	2 cut(s)	168, 924
AccI	GTMKAC	2 cut(s)	43, 501
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	69, 149
AclWI	GGATC	1 cut(s)	617
AcoI	YGGCCR	1 cut(s)	899
AcuI	CTGAAG	2 cut(s)	340, 541
AfaI	GTAC	2 cut(s)	261, 1004
AfiI	CCNNNNNNNGG	2 cut(s)	75, 163
AgsI	TTSAA	4 cut(s)	255, 667, 861, 924
AhlI	ACTAGT	1 cut(s)	1005
AjnI	CCWGG	2 cut(s)	156, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	8 cut(s)	198, 328, 415, 535, 684, 730, 841, 847
AluI	AGCT	8 cut(s)	198, 328, 415, 535, 684, 730, 841, 847
Alw21I	GWGCWC	1 cut(s)	458
AlwI	GGATC	1 cut(s)	617
AoxI	GGCC	2 cut(s)	128, 899
ApeKI	GCWGC	2 cut(s)	703, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
Asp700I	GAANNNNTTC	1 cut(s)	820
AspS9I	GGNCC	2 cut(s)	48, 161
AsuC2I	CCSGG	2 cut(s)	132, 448
AsuHPI	GGTGA	3 cut(s)	201, 216, 920
AvaII	GGWCC	2 cut(s)	48, 161
BalI	TGGCCA	1 cut(s)	901
BbsI	GAAGAC	1 cut(s)	946
Bbv12I	GWGCWC	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	690, 693
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	158, 744
BciVI	GTATCC	1 cut(s)	933
BclI	TGATCA	1 cut(s)	891
BcnI	CCSGG	2 cut(s)	132, 448
BcuI	ACTAGT	1 cut(s)	1005
BfaI	CTAG	1 cut(s)	1006
BfuI	GTATCC	1 cut(s)	933
BisI	GCNGC	3 cut(s)	69, 704, 707
BlsI	GCNGC	3 cut(s)	70, 705, 708
Bme1390I	CCNGG	4 cut(s)	132, 158, 448, 744
Bme18I	GGWCC	2 cut(s)	48, 161
BmgT120I	GGNCC	2 cut(s)	48, 161
BmiI	GGNNCC	3 cut(s)	50, 162, 236
BmrFI	CCNGG	4 cut(s)	132, 158, 448, 744
BmsI	GCATC	2 cut(s)	718, 749
BpiI	GAAGAC	1 cut(s)	946
BplI	GAGNNNNNCTC	2 cut(s)	714, 746
BpmI	CTGGAG	3 cut(s)	115, 734, 827
BpuEI	CTTGAG	2 cut(s)	477, 604
BpuMI	CCSGG	2 cut(s)	132, 448
BsaJI	CCNNGG	2 cut(s)	157, 179
BsaWI	WCCGGW	2 cut(s)	163, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 163
Bse1I	ACTGG	1 cut(s)	931
Bse3DI	GCAATG	2 cut(s)	31, 902
BseBI	CCWGG	2 cut(s)	158, 744
BseDI	CCNNGG	2 cut(s)	157, 179
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	75, 163
BseMI	GCAATG	2 cut(s)	31, 902
BseMII	CTCAG	2 cut(s)	394, 818
BseNI	ACTGG	1 cut(s)	931
BseXI	GCAGC	2 cut(s)	690, 693
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	130, 901
BsiHKAI	GWGCWC	1 cut(s)	458
BsiSI	CCGG	4 cut(s)	131, 164, 238, 447
BslFI	GGGAC	3 cut(s)	34, 174, 405
BslI	CCNNNNNNNGG	2 cut(s)	75, 163
BsmFI	GGGAC	3 cut(s)	34, 174, 405
BsnI	GGCC	2 cut(s)	130, 901
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	537, 609, 891
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	2 cut(s)	69, 149
BspANI	GGCC	2 cut(s)	130, 901
BspCNI	CTCAG	2 cut(s)	393, 819
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	3 cut(s)	50, 162, 236
BspPI	GGATC	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	31, 902
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	931
BssECI	CCNNGG	2 cut(s)	157, 179
BssMI	GATC	3 cut(s)	537, 609, 891
BssNAI	GTATAC	1 cut(s)	502
BssT1I	CCWWGG	1 cut(s)	179
Bst1107I	GTATAC	1 cut(s)	502
Bst2UI	CCWGG	2 cut(s)	158, 744
Bst4CI	ACNGT	4 cut(s)	48, 60, 259, 660
Bst6I	CTCTTC	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	6 cut(s)	293, 380, 395, 531, 605, 827
BstDSI	CCRYGG	1 cut(s)	179
BstEII	GGTNACC	1 cut(s)	972
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	540, 612, 894
BstMBI	GATC	3 cut(s)	537, 609, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	2 cut(s)	158, 744
BstNSI	RCATGY	1 cut(s)	676
BstPI	GGTNACC	1 cut(s)	972
BstSCI	CCNGG	4 cut(s)	130, 156, 446, 742
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	690, 693
BstV2I	GAAGAC	1 cut(s)	946
BstZ17I	GTATAC	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	933
BsuRI	GGCC	2 cut(s)	130, 901
BtgI	CCRYGG	1 cut(s)	179
BtgZI	GCGATG	2 cut(s)	86, 248
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	458, 656
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	48, 161
Csp6I	GTAC	2 cut(s)	260, 1003
CspCI	CAANNNNNGTGG	2 cut(s)	659, 694
CviAII	CATG	7 cut(s)	110, 180, 460, 471, 673, 897, 981
CviQI	GTAC	2 cut(s)	260, 1003
DdeI	CTNAG	6 cut(s)	293, 380, 395, 531, 605, 827
DpnI	GATC	3 cut(s)	539, 611, 893
DpnII	GATC	3 cut(s)	537, 609, 891
DrdI	GACNNNNNNGTC	2 cut(s)	168, 924
DseDI	GACNNNNNNGTC	2 cut(s)	168, 924
EaeI	YGGCCR	1 cut(s)	899
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	48, 161
Eco57I	CTGAAG	2 cut(s)	340, 541
Eco91I	GGTNACC	1 cut(s)	972
EcoO65I	GGTNACC	1 cut(s)	972
EcoRII	CCWGG	2 cut(s)	156, 742
EcoT14I	CCWWGG	1 cut(s)	179
EcoT22I	ATGCAT	2 cut(s)	115, 678
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	7 cut(s)	113, 183, 463, 474, 676, 900, 984
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	3 cut(s)	34, 174, 405
FatI	CATG	7 cut(s)	109, 179, 459, 470, 672, 896, 980
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	891
FblI	GTMKAC	2 cut(s)	43, 501
Fnu4HI	GCNGC	3 cut(s)	69, 704, 707
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	3 cut(s)	69, 704, 707
FspBI	CTAG	1 cut(s)	1006
GluI	GCNGC	3 cut(s)	69, 704, 707
GsuI	CTGGAG	3 cut(s)	115, 734, 827
HaeIII	GGCC	2 cut(s)	130, 901
HapII	CCGG	4 cut(s)	131, 164, 238, 447
Hin1II	CATG	7 cut(s)	113, 183, 463, 474, 676, 900, 984
HinfI	GANTC	4 cut(s)	615, 624, 781, 816
HpaII	CCGG	4 cut(s)	131, 164, 238, 447
HphI	GGTGA	3 cut(s)	201, 216, 920
Hpy166II	GTNNAC	2 cut(s)	44, 502
Hpy188I	TCNGA	5 cut(s)	282, 359, 387, 614, 828
Hpy188III	TCNNGA	5 cut(s)	94, 232, 494, 621, 713
Hpy8I	GTNNAC	2 cut(s)	44, 502
HpyAV	CCTTC	2 cut(s)	120, 180
HpyCH4III	ACNGT	4 cut(s)	48, 60, 259, 660
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	6 cut(s)	293, 380, 395, 531, 605, 827
Hsp92II	CATG	7 cut(s)	113, 183, 463, 474, 676, 900, 984
Ksp22I	TGATCA	1 cut(s)	891
Kzo9I	GATC	3 cut(s)	537, 609, 891
LmnI	GCTCC	5 cut(s)	6, 78, 461, 681, 846
Lsp1109I	GCAGC	2 cut(s)	690, 693
LweI	GCATC	2 cut(s)	718, 749
MaeI	CTAG	1 cut(s)	1006
MaeIII	GTNAC	2 cut(s)	926, 972
MalI	GATC	3 cut(s)	539, 611, 893
MboI	GATC	3 cut(s)	537, 609, 891
MboII	GAAGA	3 cut(s)	96, 346, 946
MfeI	CAATTG	1 cut(s)	752
MhlI	GDGCHC	1 cut(s)	458
MlsI	TGGCCA	1 cut(s)	901
MluCI	AATT	6 cut(s)	207, 250, 361, 567, 752, 887
MluNI	TGGCCA	1 cut(s)	901
MmeI	TCCRAC	2 cut(s)	227, 404
Mox20I	TGGCCA	1 cut(s)	901
Mph1103I	ATGCAT	2 cut(s)	115, 678
MroXI	GAANNNNTTC	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	901
MseI	TTAA	3 cut(s)	433, 565, 796
Msp20I	TGGCCA	1 cut(s)	901
MspI	CCGG	4 cut(s)	131, 164, 238, 447
MspR9I	CCNGG	4 cut(s)	132, 158, 448, 744
MunI	CAATTG	1 cut(s)	752
MvaI	CCWGG	2 cut(s)	158, 744
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	2 cut(s)	132, 448
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	3 cut(s)	537, 609, 891
NlaIII	CATG	7 cut(s)	113, 183, 463, 474, 676, 900, 984
NlaIV	GGNNCC	3 cut(s)	50, 162, 236
NmuCI	GTSAC	1 cut(s)	926
NsiI	ATGCAT	2 cut(s)	115, 678
NspI	RCATGY	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	615, 624, 781, 816
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	70, 705, 708
PsiI	TTATAA	1 cut(s)	586
Psp6I	CCWGG	2 cut(s)	156, 742
PspEI	GGTNACC	1 cut(s)	972
PspGI	CCWGG	2 cut(s)	156, 742
PspN4I	GGNNCC	3 cut(s)	50, 162, 236
PspPI	GGNCC	2 cut(s)	48, 161
RsaI	GTAC	2 cut(s)	261, 1004
RsaNI	GTAC	2 cut(s)	260, 1003
SaqAI	TTAA	3 cut(s)	433, 565, 796
SatI	GCNGC	3 cut(s)	69, 704, 707
Sau3AI	GATC	3 cut(s)	537, 609, 891
Sau96I	GGNCC	2 cut(s)	48, 161
ScrFI	CCNGG	4 cut(s)	132, 158, 448, 744
SduI	GDGCHC	1 cut(s)	458
SfaNI	GCATC	2 cut(s)	718, 749
SinI	GGWCC	2 cut(s)	48, 161
SmlI	CTYRAG	2 cut(s)	492, 619
SmoI	CTYRAG	2 cut(s)	492, 619
SpeI	ACTAGT	1 cut(s)	1005
Sse9I	AATT	6 cut(s)	207, 250, 361, 567, 752, 887
SsiI	CCGC	2 cut(s)	69, 149
SspMI	CTAG	1 cut(s)	1006
StyD4I	CCNGG	4 cut(s)	130, 156, 446, 742
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	4 cut(s)	48, 60, 259, 660
TaqI	TCGA	1 cut(s)	527
TasI	AATT	6 cut(s)	207, 250, 361, 567, 752, 887
TatI	WGTACW	2 cut(s)	259, 1002
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	4 cut(s)	615, 624, 781, 816
Tru1I	TTAA	3 cut(s)	433, 565, 796
Tru9I	TTAA	3 cut(s)	433, 565, 796
TscAI	CASTG	2 cut(s)	458, 663
TseFI	GTSAC	1 cut(s)	926
TseI	GCWGC	2 cut(s)	703, 706
Tsp45I	GTSAC	1 cut(s)	926
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	2 cut(s)	458, 663
VpaK11BI	GGWCC	2 cut(s)	48, 161
XceI	RCATGY	1 cut(s)	676
XmiI	GTMKAC	2 cut(s)	43, 501
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	1 cut(s)	1006
Zsp2I	ATGCAT	2 cut(s)	115, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.