Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

9658875 .. 9659366

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAACTACTACGTTCTTCATTTCCCTGCTAGTTCTCTTTTTTGCTTCTCTCTACTATATCTTCTGTAAAATTATTCCAAGCCCTAGGCAACAAGTAACAGTTTATCAACTGCCACCAGGAAGCACAGGTTGGCCCATCATTGGCGAAACCTTCGAGTATCTACGCACAGCCAGAAACGGTGTCCCTGAAAAGTTTGTAGCAGACCGAAGGAAAAAGTACTCCAATGTCTCATTATCATCAGCTGCAGCAACAGCAGGCTCGTGCAAGGTGTTCAAGACATCGTTGCTTGGCGAAACTATGGCCATGCTGTGCACCGCTGCTGGAAACAAATTCCTGTTTTCAAATGAGAACAATCTGGTCAAGTCCTGGTGGCCTGCTAACTTCAAAAAGATGTTTCCAAACACCGACAAAGCAGACTTCTCCAAAGAGACCATCCGAATGCGCGCAGGTCTACATTTCTCAAGCCTGACGCTGTCCGAAAGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

163

Amino Acids

18.31

Weight (kDa)

9.57

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	454
AccII	CGCG	1 cut(s)	447
AciI	CCGC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	277, 345, 388
AjnI	CCWGG	2 cut(s)	118, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	235, 425
Alw44I	GTGCAC	1 cut(s)	313
AoxI	GGCC	3 cut(s)	134, 303, 374
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	245, 248, 320
ApoI	RAATTY	1 cut(s)	332
AspA2I	CCTAGG	1 cut(s)	86
AspLEI	GCGC	2 cut(s)	447, 449
AspS9I	GGNCC	1 cut(s)	135
AvrII	CCTAGG	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	305
BauI	CACGAG	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	232, 260, 307
BccI	CCATC	2 cut(s)	146, 443
BciT130I	CCWGG	2 cut(s)	120, 370
BcoDI	GTCTC	2 cut(s)	235, 425
BfaI	CTAG	2 cut(s)	32, 87
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	246, 249, 321
BlnI	CCTAGG	1 cut(s)	86
BlsI	GCNGC	3 cut(s)	247, 250, 322
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	120, 370
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	120, 370
BpuEI	CTTGAG	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	120, 370
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	143
BsePI	GCGCGC	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	232, 260, 307
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	3 cut(s)	136, 305, 376
BsiHKAI	GWGCWC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	235, 425
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	3 cut(s)	136, 305, 376
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	317
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	3 cut(s)	136, 305, 376
BspFNI	CGCG	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	86
BssHII	GCGCGC	1 cut(s)	445
BssSI	CACGAG	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	120, 370
Bst4CI	ACNGT	2 cut(s)	103, 182
BstC8I	GCNNGC	3 cut(s)	259, 378, 447
BstF5I	GGATG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	447
BstHHI	GCGC	2 cut(s)	447, 449
BstMAI	GTCTC	2 cut(s)	235, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	120, 370
BstSCI	CCNGG	2 cut(s)	118, 368
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	232, 260, 307
BsuRI	GGCC	3 cut(s)	136, 305, 376
BtsCI	GGATG	1 cut(s)	435
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	3 cut(s)	259, 378, 447
CfoI	GCGC	2 cut(s)	447, 449
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	8 cut(s)	84, 136, 173, 245, 261, 305, 376, 468
CviKI_1	RGCY	8 cut(s)	84, 136, 173, 245, 261, 305, 376, 468
CviQI	GTAC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	118, 368
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	310
FaiI	YATR	5 cut(s)	60, 302, 308, 488, 490
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	454
Fnu4HI	GCNGC	3 cut(s)	246, 249, 321
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	3 cut(s)	246, 249, 321
FspBI	CTAG	2 cut(s)	32, 87
GlaI	GCGC	2 cut(s)	446, 448
GluI	GCNGC	3 cut(s)	246, 249, 321
HaeIII	GGCC	3 cut(s)	136, 305, 376
HgaI	GACGC	1 cut(s)	481
HhaI	GCGC	2 cut(s)	447, 449
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	2 cut(s)	445, 447
HinP1I	GCGC	2 cut(s)	445, 447
Hpy166II	GTNNAC	2 cut(s)	315, 455
Hpy188I	TCNGA	2 cut(s)	440, 481
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	2 cut(s)	315, 455
HpyAV	CCTTC	2 cut(s)	163, 204
HpyCH4III	ACNGT	2 cut(s)	103, 182
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	248, 267, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	2 cut(s)	445, 447
Lsp1109I	GCAGC	3 cut(s)	232, 260, 307
MaeI	CTAG	2 cut(s)	32, 87
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	10, 55
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	72, 332
MluNI	TGGCCA	1 cut(s)	305
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	245, 320
MspR9I	CCNGG	2 cut(s)	120, 370
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	120, 370
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	1 cut(s)	254
NlaIII	CATG	1 cut(s)	310
PauI	GCGCGC	1 cut(s)	445
PctI	GAATGC	1 cut(s)	447
PflFI	GACNNNGTC	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	247, 250, 322
Psp6I	CCWGG	2 cut(s)	118, 368
PspGI	CCWGG	2 cut(s)	118, 368
PspPI	GGNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	475
PteI	GCGCGC	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	440
SatI	GCNGC	3 cut(s)	246, 249, 321
Sau96I	GGNCC	1 cut(s)	135
ScaI	AGTACT	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	120, 370
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	6 cut(s)	17, 133, 155, 247, 273, 454
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	2 cut(s)	72, 332
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	32, 87
StyD4I	CCNGG	2 cut(s)	118, 368
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	103, 182
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	156
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	72, 332
TatI	WGTACW	1 cut(s)	219
TseI	GCWGC	3 cut(s)	245, 248, 320
TspDTI	ATGAA	1 cut(s)	10
Tth111I	GACNNNGTC	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	454
XspI	CTAG	2 cut(s)	32, 87
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.