Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001960.1

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Forward (+)

2994 .. 4743

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001960.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgctgagatccaattcgtcgccgatgaagctcagtctgatgaaatgcaagcgccttggaatttcttccgtcgcgaaattacacaacgttgaggtcgaatcggagaggagcgtggaggatgtagtcggatccggcggtgatttgactccgcagaagcggaagttgaggtccgattcgtcatcgatgaagtgtaaatcggcttgcaggaacctcagtgcttgcaccagcactcctgcaaatggaattgagaagtatttcagtcagaaaaagcctcaagccttttgcaaaccaccgattgttgctaagccgaattggaatcccagagataaggagcagatgaggatagtgaaggaggcattgcacttgtctacggttccctctacagttgcgtgccgcgacgtggagcagaagagggttttggagttctgcaagtcatgcatagagcaagagaaggccgggagtttatatgtatgcgggtgtcctgggaccggaaagtccttgtccatggagaaagtgaaacagcttttggtgaattgggcaggagagggtagatttcaggaaccggatgtgttggaattgaactgtacatcgctaacaaaaacttatgatattttcgctaagatacttggtaaataccaacctcaaaagaaagctaatggcactacctccctgcaacttcttcagaaattatattctcaaaagcctcagtcagatgggactaagatgatgttgataatagctgatgagttggattacttaatcactaaagaccgggcagtgctccatgaccttttcatgctcacaacatacccattctcaagatgtatacttttaggagtagcaaatgcaatcaacttagctgatcgttttgttccaaaacttctgtcattaaattgtaagcctatggttataacttttcgggcatactctaaggatcagattctcaagattctccaagagaggcttatggtaagtttgtgctccttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

329

Amino Acids

36.83

Weight (kDa)

9.38

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	911
AasI	GACNNNNNNGTC	1 cut(s)	493
AccI	GTMKAC	2 cut(s)	368, 826
AccII	CGCG	2 cut(s)	74, 396
AciI	CCGC	5 cut(s)	135, 149, 157, 394, 474
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	4 cut(s)	3, 123, 136, 942
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	665
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	3 cut(s)	239, 400, 488
AgsI	TTSAA	1 cut(s)	580
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	481
AjuI	GAANNNNNNNTTGG	4 cut(s)	401, 433, 509, 541
AluBI	AGCT	5 cut(s)	31, 523, 653, 740, 860
AluI	AGCT	5 cut(s)	31, 523, 653, 740, 860
Alw21I	GWGCWC	2 cut(s)	783, 983
AlwI	GGATC	4 cut(s)	3, 123, 136, 942
AoxI	GGCC	1 cut(s)	453
ApoI	RAATTY	1 cut(s)	60
ArsI	GACNNNNNNTTYG	2 cut(s)	869, 901
Asp700I	GAANNNNTTC	2 cut(s)	64, 254
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	168, 486
AsuC2I	CCSGG	2 cut(s)	457, 773
AsuHPI	GGTGA	2 cut(s)	149, 541
AvaII	GGWCC	2 cut(s)	168, 486
BamHI	GGATCC	1 cut(s)	128
Bbv12I	GWGCWC	2 cut(s)	783, 983
BccI	CCATC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	483
BcnI	CCSGG	2 cut(s)	457, 773
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	394
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	3 cut(s)	457, 483, 773
Bme18I	GGWCC	2 cut(s)	168, 486
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	168, 486
BmiI	GGNNCC	5 cut(s)	130, 209, 375, 487, 561
BmrFI	CCNGG	3 cut(s)	457, 483, 773
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	3 cut(s)	258, 802, 929
BpuMI	CCSGG	2 cut(s)	457, 773
Bsa29I	ATCGAT	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	55, 482, 504
BsaWI	WCCGGW	2 cut(s)	488, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 400, 488
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	55, 482, 504
BseGI	GGATG	2 cut(s)	124, 571
BseLI	CCNNNNNNNGG	3 cut(s)	239, 400, 488
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	3 cut(s)	46, 226, 719
BseRI	GAGGAG	1 cut(s)	121
Bsh1236I	CGCG	2 cut(s)	74, 396
BshFI	GGCC	1 cut(s)	455
BshVI	ATCGAT	1 cut(s)	182
BsiHKAI	GWGCWC	2 cut(s)	783, 983
BsiSI	CCGG	5 cut(s)	132, 456, 489, 563, 772
BslFI	GGGAC	2 cut(s)	499, 730
BslI	CCNNNNNNNGG	3 cut(s)	239, 400, 488
BsmFI	GGGAC	2 cut(s)	499, 730
BsnI	GGCC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	783, 983
Bsp1407I	TGTACA	1 cut(s)	584
Bsp143I	GATC	4 cut(s)	8, 128, 862, 934
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	504
Bsp68I	TCGCGA	1 cut(s)	74
BspACI	CCGC	5 cut(s)	135, 149, 157, 394, 474
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	3 cut(s)	45, 225, 718
BspDI	ATCGAT	1 cut(s)	182
BspFNI	CGCG	2 cut(s)	74, 396
BspLI	GGNNCC	5 cut(s)	130, 209, 375, 487, 561
BspPI	GGATC	4 cut(s)	3, 123, 136, 942
BsrDI	GCAATG	1 cut(s)	356
BsrGI	TGTACA	1 cut(s)	584
BssECI	CCNNGG	3 cut(s)	55, 482, 504
BssMI	GATC	4 cut(s)	8, 128, 862, 934
BssNAI	GTATAC	1 cut(s)	827
BssT1I	CCWWGG	2 cut(s)	55, 504
Bst1107I	GTATAC	1 cut(s)	827
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	373, 385, 584
Bst6I	CTCTTC	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	584
BstC8I	GCNNGC	4 cut(s)	50, 202, 220, 391
BstDEI	CTNAG	9 cut(s)	5, 32, 212, 303, 618, 705, 720, 856, 930
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	124, 571
BstFNI	CGCG	2 cut(s)	74, 396
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	4 cut(s)	11, 131, 865, 937
BstMBI	GATC	4 cut(s)	8, 128, 862, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 435
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	3 cut(s)	455, 481, 771
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	2 cut(s)	74, 396
BstX2I	RGATCY	2 cut(s)	8, 128
BstYI	RGATCY	2 cut(s)	8, 128
BstZ17I	GTATAC	1 cut(s)	827
Bsu15I	ATCGAT	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	455
BsuTUI	ATCGAT	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	124, 571
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	220, 783
BtuMI	TCGCGA	1 cut(s)	74
Cac8I	GCNNGC	4 cut(s)	50, 202, 220, 391
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	168, 486
ClaI	ATCGAT	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	4 cut(s)	435, 505, 785, 796
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	9 cut(s)	5, 32, 212, 303, 618, 705, 720, 856, 930
DpnI	GATC	4 cut(s)	10, 130, 864, 936
DpnII	GATC	4 cut(s)	8, 128, 862, 934
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco130I	CCWWGG	2 cut(s)	55, 504
Eco47I	GGWCC	2 cut(s)	168, 486
Eco57I	CTGAAG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	55, 504
EcoT22I	ATGCAT	1 cut(s)	440
ErhI	CCWWGG	2 cut(s)	55, 504
FaeI	CATG	4 cut(s)	438, 508, 788, 799
FalI	AAGNNNNNCTT	2 cut(s)	948, 980
FaqI	GGGAC	2 cut(s)	499, 730
FatI	CATG	4 cut(s)	434, 504, 784, 795
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	2 cut(s)	368, 826
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	2 cut(s)	131, 578
Fsp4HI	GCNGC	1 cut(s)	394
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	394
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	5 cut(s)	132, 456, 489, 563, 772
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	438, 508, 788, 799
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	6 cut(s)	98, 145, 173, 316, 940, 949
HpaII	CCGG	5 cut(s)	132, 456, 489, 563, 772
HphI	GGTGA	2 cut(s)	149, 541
Hpy166II	GTNNAC	2 cut(s)	369, 827
Hpy188I	TCNGA	8 cut(s)	39, 103, 128, 172, 264, 684, 712, 939
Hpy188III	TCNNGA	4 cut(s)	73, 557, 819, 946
Hpy8I	GTNNAC	2 cut(s)	369, 827
Hpy99I	CGWCG	3 cut(s)	22, 74, 401
HpyAV	CCTTC	2 cut(s)	343, 445
HpyCH4III	ACNGT	3 cut(s)	373, 385, 584
HpyCH4IV	ACGT	2 cut(s)	87, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 435
HpyF3I	CTNAG	9 cut(s)	5, 32, 212, 303, 618, 705, 720, 856, 930
HpySE526I	ACGT	2 cut(s)	87, 399
Hsp92II	CATG	4 cut(s)	438, 508, 788, 799
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	8, 128, 862, 934
LmnI	GCTCC	5 cut(s)	108, 331, 403, 786, 986
MaeII	ACGT	2 cut(s)	87, 399
MalI	GATC	4 cut(s)	10, 130, 864, 936
MboI	GATC	4 cut(s)	8, 128, 862, 934
MboII	GAAGA	3 cut(s)	57, 421, 671
MflI	RGATCY	2 cut(s)	8, 128
MhlI	GDGCHC	2 cut(s)	783, 983
MluCI	AATT	9 cut(s)	13, 60, 77, 243, 310, 532, 575, 686, 892
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	3 cut(s)	106, 552, 729
Mph1103I	ATGCAT	1 cut(s)	440
MroXI	GAANNNNTTC	2 cut(s)	64, 254
MseI	TTAA	2 cut(s)	758, 890
MspI	CCGG	5 cut(s)	132, 456, 489, 563, 772
MspR9I	CCNGG	3 cut(s)	457, 483, 773
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	2 cut(s)	74, 396
MwoI	GCNNNNNNNGC	2 cut(s)	28, 435
NciI	CCSGG	2 cut(s)	457, 773
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	4 cut(s)	8, 128, 862, 934
NlaIII	CATG	4 cut(s)	438, 508, 788, 799
NlaIV	GGNNCC	5 cut(s)	130, 209, 375, 487, 561
NruI	TCGCGA	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	2 cut(s)	64, 254
PfeI	GAWTC	5 cut(s)	98, 173, 316, 940, 949
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	911
Psp1406I	AACGTT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	5 cut(s)	130, 209, 375, 487, 561
PspPI	GGNCC	2 cut(s)	168, 486
PsuI	RGATCY	2 cut(s)	8, 128
RruI	TCGCGA	1 cut(s)	74
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	758, 890
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	4 cut(s)	8, 128, 862, 934
Sau96I	GGNCC	2 cut(s)	168, 486
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	3 cut(s)	457, 483, 773
SduI	GDGCHC	2 cut(s)	783, 983
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	168, 486
SmlI	CTYRAG	3 cut(s)	273, 817, 944
SmoI	CTYRAG	3 cut(s)	273, 817, 944
Sse9I	AATT	9 cut(s)	13, 60, 77, 243, 310, 532, 575, 686, 892
SsiI	CCGC	5 cut(s)	135, 149, 157, 394, 474
StyD4I	CCNGG	3 cut(s)	455, 481, 771
StyI	CCWWGG	2 cut(s)	55, 504
TaaI	ACNGT	3 cut(s)	373, 385, 584
TaiI	ACGT	2 cut(s)	90, 402
TaqI	TCGA	2 cut(s)	96, 182
TasI	AATT	9 cut(s)	13, 60, 77, 243, 310, 532, 575, 686, 892
TatI	WGTACW	1 cut(s)	584
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	5 cut(s)	98, 173, 316, 940, 949
Tru1I	TTAA	2 cut(s)	758, 890
Tru9I	TTAA	2 cut(s)	758, 890
TscAI	CASTG	2 cut(s)	220, 783
TspDTI	ATGAA	4 cut(s)	41, 56, 200, 784
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	220, 783
VpaK11BI	GGWCC	2 cut(s)	168, 486
XapI	RAATTY	1 cut(s)	60
XmiI	GTMKAC	2 cut(s)	368, 826
XmnI	GAANNNNTTC	2 cut(s)	64, 254
Zsp2I	ATGCAT	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.