Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Forward (+)

36284879 .. 36298299

Gene Structure 13421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG347600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2568 bp

ATGTCTTCCATCGCCGACCGCAGCGTCGAACTCGAATCCAATGCCGTCGGATCCGCCGGAGTTTCTACTCCTCCGAAACGGAGGCTGAGATCCAATTCGTCGCCGATGAAGCTGAGTCCGGTGAAATGCAAGCGCGTCGGAATTTCTTCCGTCGCGAAATTATGCAGCGTTGTGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCTGGCGGTGATTTGACTCCTCAGAAGCGGAAGTTGAGGTCCGATTCGTCGTCGCCGATGAAGCCGAGACCGGTCTCGTCGCCGATGAAGTGTAAATCGGCTCGCCAGAACCTCAGTGCTTGCAGCAGCACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTTTTGCAAACCACCGGTTGTTGCTAAGCCGAATTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTACTGTTGCGTGCCGCGACGTGGAGCAGAAGAGGGTTTTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGGGTGGATTTCAGGAACCGGATGTGTTGGAATTGAACTGTACATTGCTAACAAAAACTTCTGATATTTTCACCAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAAATAGGACTAAGATGATGTTTAAGCAAGCCTCTGATTCCCGTCACATCTTCACAATGCCTTCCATCGCCGACCTCAGCGTTGAACTTGAATCCAACGCCGTCGGATCTGCCGGAGTTTCTACTCCTCCGAAACGGAGGCTGAGATCCAATTCGTCGCCGATGAAGCTGAGTCCGATGAAATGCAAGCGCGTTGGAATTTCTTCCGTCGCGAAATTACGCAACTTTGAGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCAGAAGCGGAAGTTGAGGTCCGATTCGTCGTCGCCGATGAAGCCGAGACCTGTCTCGTCGCCGATGAAGTGTAAATCGGCTCGCCAGAACCTCAGTGCTTGCACCAGCACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTTTTGCAAACCACCGATTGTTGCTAAGCCGAATTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCAACGGTCCCCTCTACTGTTGCGTGCCGCGATGTGGAGCAGAAGAGGGTTCTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGGGTGGATTTCAGGAACCGGATGTGTTGGAATTGAACTGTACATCGCTAACAAAAACTTCTGATATTTTCGCTAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAGATGGGACTAAGATGATGTTGATAATAGCTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTCCATGACCTTTTCATGCTCACAACATACCCATTCTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATCGACTTAGCTGATCGTTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTACCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGAGATATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTCTTGCTCTGGTGAAAAAACAGGAGATTGATATTGTGAGAATTGATCACATGGCCATTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAATGTGCTCTGCTGCAAAGCATTTCCGTGGTGTGAAGAAAGATACAACTATAGGAGAGTTAAACAAATCTTACATAGACATCTGCAAAGCAACACTAATTCCCCCGGTTGGGAGTTTTGAATTTTCAAGTATGTGCAAAGTGCTAAATGACCAGGGCCTCCTCAAACTCAGTGGCCAATCCAGAGATATAAAATCCAAGAGAGTGACATTGAATGTAGATGAAGGGGACATCACATTTGCATTGCAGGGAATCCGGTTTTTTCGGACTTGTCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

855

Amino Acids

94.38

Weight (kDa)

9.48

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	188 - 268	1.5e-08	AAA domain
AAA_22	PF13401	480 - 597	2.8e-12	AAA domain
Cdc6-ORC-like_ATPase_lid	PF22606	638 - 695	3.7e-11	Cdc6/ORC-like, ATPase lid domain
WHD_Cdc6	PF09079	751 - 843	8.6e-20	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1898, 2288
AasI	GACNNNNNNGTC	4 cut(s)	23, 604, 1480, 2236
AccI	GTMKAC	2 cut(s)	479, 1813
AccII	CGCG	6 cut(s)	135, 155, 507, 1011, 1031, 1383
AclWI	GGATC	9 cut(s)	45, 58, 84, 217, 934, 960, 1080, 1093, 1929
AcoI	YGGCCR	2 cut(s)	2211, 2461
AcsI	RAATTY	4 cut(s)	141, 1017, 2110, 2408
AcuI	CTGAAG	3 cut(s)	776, 1652, 1853
AfaI	GTAC	2 cut(s)	697, 1573
AfiI	CCNNNNNNNGG	8 cut(s)	350, 511, 599, 1226, 1387, 1475, 2396, 2397
AgeI	ACCGGT	2 cut(s)	280, 403
AgsI	TTSAA	9 cut(s)	691, 905, 911, 1567, 1979, 2236, 2408, 2415, 2500
AjiI	CACGTC	1 cut(s)	511
AjnI	CCWGG	4 cut(s)	592, 1468, 2054, 2439
AjuI	GAANNNNNNNTTGG	6 cut(s)	512, 544, 620, 652, 1496, 1528
Alw21I	GWGCWC	2 cut(s)	1770, 2297
Alw26I	GTCTC	4 cut(s)	271, 289, 1147, 1165
AlwI	GGATC	9 cut(s)	45, 58, 84, 217, 934, 960, 1080, 1093, 1929
AoxI	GGCC	5 cut(s)	564, 1440, 2211, 2443, 2461
ApeKI	GCWGC	7 cut(s)	21, 165, 333, 336, 2015, 2018, 2300
ApoI	RAATTY	4 cut(s)	141, 1017, 2110, 2408
ArsI	GACNNNNNNTTYG	4 cut(s)	1856, 1888, 2507, 2539
AsiGI	ACCGGT	2 cut(s)	280, 403
Asp700I	GAANNNNTTC	5 cut(s)	145, 365, 1021, 1241, 2132
AspLEI	GCGC	2 cut(s)	135, 1011
AspS9I	GGNCC	6 cut(s)	249, 597, 1125, 1360, 1473, 2443
AsuC2I	CCSGG	4 cut(s)	568, 1444, 1760, 2393
AsuHPI	GGTGA	8 cut(s)	133, 230, 652, 718, 1106, 1528, 2182, 2232
AvaII	GGWCC	5 cut(s)	249, 597, 1125, 1360, 1473
BalI	TGGCCA	2 cut(s)	2213, 2463
BamHI	GGATCC	2 cut(s)	50, 1085
BbsI	GAAGAC	1 cut(s)	2258
Bbv12I	GWGCWC	2 cut(s)	1770, 2297
BbvCI	CCTCAGC	1 cut(s)	896
BbvI	GCAGC	7 cut(s)	33, 177, 345, 348, 2002, 2005, 2287
BccI	CCATC	3 cut(s)	17, 893, 1694
BceAI	ACGGC	2 cut(s)	29, 905
BcgI	CGANNNNNNTGC	4 cut(s)	23, 57, 118, 152
BciT130I	CCWGG	4 cut(s)	594, 1470, 2056, 2441
BciVI	GTATCC	1 cut(s)	2245
BclI	TGATCA	1 cut(s)	2203
BcnI	CCSGG	4 cut(s)	568, 1444, 1760, 2393
BcoDI	GTCTC	4 cut(s)	271, 289, 1147, 1165
BfmI	CTRYAG	1 cut(s)	2337
BfuI	GTATCC	1 cut(s)	2245
BisI	GCNGC	9 cut(s)	22, 166, 334, 337, 505, 1381, 2016, 2019, 2301
BlpI	GCTNAGC	2 cut(s)	414, 1290
BlsI	GCNGC	9 cut(s)	23, 167, 335, 338, 506, 1382, 2017, 2020, 2302
Bme1390I	CCNGG	8 cut(s)	568, 594, 1444, 1470, 1760, 2056, 2393, 2441
Bme18I	GGWCC	5 cut(s)	249, 597, 1125, 1360, 1473
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	6 cut(s)	249, 597, 1125, 1360, 1473, 2443
BmiI	GGNNCC	8 cut(s)	52, 486, 598, 672, 1087, 1362, 1474, 1548
BmrFI	CCNGG	8 cut(s)	568, 594, 1444, 1470, 1760, 2056, 2393, 2441
BmsI	GCATC	2 cut(s)	2030, 2061
BpiI	GAAGAC	1 cut(s)	2258
BplI	GAGNNNNNCTC	2 cut(s)	2026, 2058
BpmI	CTGGAG	3 cut(s)	1427, 2046, 2139
Bpu10I	CCTNAGC	1 cut(s)	896
Bpu1102I	GCTNAGC	2 cut(s)	414, 1290
BpuEI	CTTGAG	4 cut(s)	369, 1245, 1789, 1916
BpuMI	CCSGG	4 cut(s)	568, 1444, 1760, 2393
BsaI	GGTCTC	3 cut(s)	271, 289, 1147
BsaJI	CCNNGG	7 cut(s)	593, 615, 1469, 1491, 2314, 2391, 2440
BsaWI	WCCGGW	8 cut(s)	118, 280, 403, 599, 673, 1475, 1549, 2541
BsaXI	ACNNNNNCTCC	2 cut(s)	1201, 1231
Bsc4I	CCNNNNNNNGG	8 cut(s)	350, 511, 599, 1226, 1387, 1475, 2396, 2397
Bse118I	RCCGGY	2 cut(s)	280, 403
Bse1I	ACTGG	1 cut(s)	2243
Bse3DI	GCAATG	5 cut(s)	467, 698, 1343, 2214, 2528
BseBI	CCWGG	4 cut(s)	594, 1470, 2056, 2441
BseDI	CCNNGG	7 cut(s)	593, 615, 1469, 1491, 2314, 2391, 2440
BseGI	GGATG	2 cut(s)	682, 1558
BseLI	CCNNNNNNNGG	8 cut(s)	350, 511, 599, 1226, 1387, 1475, 2396, 2397
BseMI	GCAATG	5 cut(s)	467, 698, 1343, 2214, 2528
BseNI	ACTGG	1 cut(s)	2243
BseRI	GAGGAG	9 cut(s)	60, 202, 212, 219, 936, 1078, 1088, 1095, 2438
BseXI	GCAGC	7 cut(s)	33, 177, 345, 348, 2002, 2005, 2287
Bsh1236I	CGCG	6 cut(s)	135, 155, 507, 1011, 1031, 1383
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	5 cut(s)	566, 1442, 2213, 2445, 2463
BshTI	ACCGGT	2 cut(s)	280, 403
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	1770, 2297
BslFI	GGGAC	5 cut(s)	610, 1346, 1486, 1717, 2528
BslI	CCNNNNNNNGG	8 cut(s)	350, 511, 599, 1226, 1387, 1475, 2396, 2397
BsmAI	GTCTC	4 cut(s)	271, 289, 1147, 1165
BsmFI	GGGAC	5 cut(s)	610, 1346, 1486, 1717, 2528
BsnI	GGCC	5 cut(s)	566, 1442, 2213, 2445, 2463
Bso31I	GGTCTC	3 cut(s)	271, 289, 1147
Bsp1286I	GDGCHC	2 cut(s)	1770, 2297
Bsp1407I	TGTACA	2 cut(s)	695, 1571
Bsp143I	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
Bsp1720I	GCTNAGC	2 cut(s)	414, 1290
Bsp19I	CCATGG	2 cut(s)	615, 1491
Bsp68I	TCGCGA	2 cut(s)	155, 1031
BspANI	GGCC	5 cut(s)	566, 1442, 2213, 2445, 2463
BspFNI	CGCG	6 cut(s)	135, 155, 507, 1011, 1031, 1383
BspLI	GGNNCC	8 cut(s)	52, 486, 598, 672, 1087, 1362, 1474, 1548
BspPI	GGATC	9 cut(s)	45, 58, 84, 217, 934, 960, 1080, 1093, 1929
BspTNI	GGTCTC	3 cut(s)	271, 289, 1147
BsrDI	GCAATG	5 cut(s)	467, 698, 1343, 2214, 2528
BsrFI	RCCGGY	2 cut(s)	280, 403
BsrGI	TGTACA	2 cut(s)	695, 1571
BsrI	ACTGG	1 cut(s)	2243
BssAI	RCCGGY	2 cut(s)	280, 403
BssECI	CCNNGG	7 cut(s)	593, 615, 1469, 1491, 2314, 2391, 2440
BssMI	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
BssNAI	GTATAC	1 cut(s)	1814
BssT1I	CCWWGG	2 cut(s)	615, 1491
Bst1107I	GTATAC	1 cut(s)	1814
Bst2UI	CCWGG	4 cut(s)	594, 1470, 2056, 2441
Bst4CI	ACNGT	7 cut(s)	484, 496, 695, 1360, 1372, 1571, 1972
Bst6I	CTCTTC	2 cut(s)	515, 1391
BstAPI	GCANNNNNTGC	2 cut(s)	546, 1422
BstAUI	TGTACA	2 cut(s)	695, 1571
BstC8I	GCNNGC	9 cut(s)	131, 313, 331, 502, 849, 1007, 1189, 1207, 1378
BstDSI	CCRYGG	3 cut(s)	615, 1491, 2314
BstF5I	GGATG	2 cut(s)	682, 1558
BstFNI	CGCG	6 cut(s)	135, 155, 507, 1011, 1031, 1383
BstHHI	GCGC	2 cut(s)	135, 1011
BstKTI	GATC	9 cut(s)	53, 92, 212, 929, 968, 1088, 1852, 1924, 2206
BstMAI	GTCTC	4 cut(s)	271, 289, 1147, 1165
BstMBI	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	6 cut(s)	109, 271, 546, 985, 1147, 1422
BstNI	CCWGG	4 cut(s)	594, 1470, 2056, 2441
BstNSI	RCATGY	1 cut(s)	1988
BstSCI	CCNGG	8 cut(s)	566, 592, 1442, 1468, 1758, 2054, 2391, 2439
BstSFI	CTRYAG	1 cut(s)	2337
BstUI	CGCG	6 cut(s)	135, 155, 507, 1011, 1031, 1383
BstV1I	GCAGC	7 cut(s)	33, 177, 345, 348, 2002, 2005, 2287
BstV2I	GAAGAC	1 cut(s)	2258
BstX2I	RGATCY	6 cut(s)	50, 89, 209, 926, 965, 1085
BstYI	RGATCY	6 cut(s)	50, 89, 209, 926, 965, 1085
BstZ17I	GTATAC	1 cut(s)	1814
BsuI	GTATCC	1 cut(s)	2245
BsuRI	GGCC	5 cut(s)	566, 1442, 2213, 2445, 2463
BtgI	CCRYGG	3 cut(s)	615, 1491, 2314
BtgZI	GCGATG	3 cut(s)	871, 1398, 1560
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	682, 1558
BtsI	GCAGTG	1 cut(s)	1770
BtsIMutI	CAGTG	5 cut(s)	331, 1207, 1770, 1968, 2464
BtuMI	TCGCGA	2 cut(s)	155, 1031
Cac8I	GCNNGC	9 cut(s)	131, 313, 331, 502, 849, 1007, 1189, 1207, 1378
CfoI	GCGC	2 cut(s)	135, 1011
Cfr10I	RCCGGY	2 cut(s)	280, 403
Cfr13I	GGNCC	6 cut(s)	249, 597, 1125, 1360, 1473, 2443
CseI	GACGC	2 cut(s)	13, 124
Csp6I	GTAC	2 cut(s)	696, 1572
CspAI	ACCGGT	2 cut(s)	280, 403
CspCI	CAANNNNNGTGG	4 cut(s)	1971, 2006, 2440, 2475
CviAII	CATG	8 cut(s)	546, 616, 1422, 1492, 1772, 1783, 1985, 2209
CviQI	GTAC	2 cut(s)	696, 1572
DpnI	GATC	9 cut(s)	52, 91, 211, 928, 967, 1087, 1851, 1923, 2205
DpnII	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
DrdI	GACNNNNNNGTC	4 cut(s)	23, 604, 1480, 2236
DseDI	GACNNNNNNGTC	4 cut(s)	23, 604, 1480, 2236
EaeI	YGGCCR	2 cut(s)	2211, 2461
Eam1104I	CTCTTC	2 cut(s)	515, 1391
EarI	CTCTTC	2 cut(s)	515, 1391
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	615, 1491
Eco31I	GGTCTC	3 cut(s)	271, 289, 1147
Eco47I	GGWCC	5 cut(s)	249, 597, 1125, 1360, 1473
Eco57I	CTGAAG	3 cut(s)	776, 1652, 1853
EcoO109I	RGGNCCY	1 cut(s)	2443
EcoRII	CCWGG	4 cut(s)	592, 1468, 2054, 2439
EcoT14I	CCWWGG	2 cut(s)	615, 1491
EcoT22I	ATGCAT	3 cut(s)	551, 1427, 1990
ErhI	CCWWGG	2 cut(s)	615, 1491
FaeI	CATG	8 cut(s)	549, 619, 1425, 1495, 1775, 1786, 1988, 2212
FalI	AAGNNNNNCTT	2 cut(s)	1935, 1967
FaqI	GGGAC	5 cut(s)	610, 1346, 1486, 1717, 2528
FatI	CATG	8 cut(s)	545, 615, 1421, 1491, 1771, 1782, 1984, 2208
FauI	CCCGC	2 cut(s)	578, 1454
FbaI	TGATCA	1 cut(s)	2203
FblI	GTMKAC	2 cut(s)	479, 1813
Fnu4HI	GCNGC	9 cut(s)	22, 166, 334, 337, 505, 1381, 2016, 2019, 2301
FokI	GGATG	2 cut(s)	689, 1565
Fsp4HI	GCNGC	9 cut(s)	22, 166, 334, 337, 505, 1381, 2016, 2019, 2301
GlaI	GCGC	2 cut(s)	134, 1010
GluI	GCNGC	9 cut(s)	22, 166, 334, 337, 505, 1381, 2016, 2019, 2301
GsuI	CTGGAG	3 cut(s)	1427, 2046, 2139
HaeIII	GGCC	5 cut(s)	566, 1442, 2213, 2445, 2463
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	2 cut(s)	135, 1011
Hin1II	CATG	8 cut(s)	549, 619, 1425, 1495, 1775, 1786, 1988, 2212
Hin6I	GCGC	2 cut(s)	133, 1009
HinP1I	GCGC	2 cut(s)	133, 1009
HincII	GTYRAC	1 cut(s)	1356
HindII	GTYRAC	1 cut(s)	1356
HphI	GGTGA	8 cut(s)	133, 230, 652, 718, 1106, 1528, 2182, 2232
Hpy166II	GTNNAC	3 cut(s)	480, 1356, 1814
Hpy8I	GTNNAC	3 cut(s)	480, 1356, 1814
HpyAV	CCTTC	6 cut(s)	454, 556, 891, 1330, 1432, 2504
HpyCH4III	ACNGT	7 cut(s)	484, 496, 695, 1360, 1372, 1571, 1972
HpyCH4IV	ACGT	1 cut(s)	510
HpyF10VI	GCNNNNNNNGC	6 cut(s)	109, 271, 546, 985, 1147, 1422
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	8 cut(s)	549, 619, 1425, 1495, 1775, 1786, 1988, 2212
HspAI	GCGC	2 cut(s)	133, 1009
Ksp22I	TGATCA	1 cut(s)	2203
Kzo9I	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
LmnI	GCTCC	8 cut(s)	189, 442, 514, 1065, 1318, 1390, 1773, 2158
Lsp1109I	GCAGC	7 cut(s)	33, 177, 345, 348, 2002, 2005, 2287
LweI	GCATC	2 cut(s)	2030, 2061
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	863, 2238, 2491
MalI	GATC	9 cut(s)	52, 91, 211, 928, 967, 1087, 1851, 1923, 2205
MboI	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
MboII	GAAGA	9 cut(s)	138, 532, 782, 862, 1014, 1408, 1658, 2258, 2335
MfeI	CAATTG	1 cut(s)	2064
MflI	RGATCY	6 cut(s)	50, 89, 209, 926, 965, 1085
MhlI	GDGCHC	2 cut(s)	1770, 2297
MlsI	TGGCCA	2 cut(s)	2213, 2463
MluNI	TGGCCA	2 cut(s)	2213, 2463
MlyI	GAGTC	4 cut(s)	124, 220, 1000, 1096
Mox20I	TGGCCA	2 cut(s)	2213, 2463
Mph1103I	ATGCAT	3 cut(s)	551, 1427, 1990
MroXI	GAANNNNTTC	5 cut(s)	145, 365, 1021, 1241, 2132
MscI	TGGCCA	2 cut(s)	2213, 2463
MseI	TTAA	5 cut(s)	843, 1745, 1877, 2108, 2348
MslI	CAYNNNNRTG	1 cut(s)	2313
Msp20I	TGGCCA	2 cut(s)	2213, 2463
MspR9I	CCNGG	8 cut(s)	568, 594, 1444, 1470, 1760, 2056, 2393, 2441
MunI	CAATTG	1 cut(s)	2064
MvaI	CCWGG	4 cut(s)	594, 1470, 2056, 2441
MvnI	CGCG	6 cut(s)	135, 155, 507, 1011, 1031, 1383
MwoI	GCNNNNNNNGC	6 cut(s)	109, 271, 546, 985, 1147, 1422
NciI	CCSGG	4 cut(s)	568, 1444, 1760, 2393
NcoI	CCATGG	2 cut(s)	615, 1491
NdeII	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
NlaIII	CATG	8 cut(s)	549, 619, 1425, 1495, 1775, 1786, 1988, 2212
NlaIV	GGNNCC	8 cut(s)	52, 486, 598, 672, 1087, 1362, 1474, 1548
NmeAIII	GCCGAG	2 cut(s)	300, 1176
NmuCI	GTSAC	3 cut(s)	863, 2238, 2491
NruI	TCGCGA	2 cut(s)	155, 1031
NsiI	ATGCAT	3 cut(s)	551, 1427, 1990
NspI	RCATGY	1 cut(s)	1988
PcsI	WCGNNNNNNNCGW	2 cut(s)	263, 1139
PdmI	GAANNNNTTC	5 cut(s)	145, 365, 1021, 1241, 2132
PfoI	TCCNGGA	1 cut(s)	2054
PinAI	ACCGGT	2 cut(s)	280, 403
PkrI	GCNGC	9 cut(s)	23, 167, 335, 338, 506, 1382, 2017, 2020, 2302
PleI	GAGTC	4 cut(s)	123, 220, 999, 1096
PpsI	GAGTC	4 cut(s)	123, 220, 999, 1096
PsiI	TTATAA	2 cut(s)	1898, 2288
Psp6I	CCWGG	4 cut(s)	592, 1468, 2054, 2439
PspGI	CCWGG	4 cut(s)	592, 1468, 2054, 2439
PspN4I	GGNNCC	8 cut(s)	52, 486, 598, 672, 1087, 1362, 1474, 1548
PspPI	GGNCC	6 cut(s)	249, 597, 1125, 1360, 1473, 2443
PsuI	RGATCY	6 cut(s)	50, 89, 209, 926, 965, 1085
RruI	TCGCGA	2 cut(s)	155, 1031
RsaI	GTAC	2 cut(s)	697, 1573
RsaNI	GTAC	2 cut(s)	696, 1572
RseI	CAYNNNNRTG	1 cut(s)	2313
SaqAI	TTAA	5 cut(s)	843, 1745, 1877, 2108, 2348
SatI	GCNGC	9 cut(s)	22, 166, 334, 337, 505, 1381, 2016, 2019, 2301
Sau3AI	GATC	9 cut(s)	50, 89, 209, 926, 965, 1085, 1849, 1921, 2203
Sau96I	GGNCC	6 cut(s)	249, 597, 1125, 1360, 1473, 2443
SchI	GAGTC	4 cut(s)	124, 220, 1000, 1096
ScrFI	CCNGG	8 cut(s)	568, 594, 1444, 1470, 1760, 2056, 2393, 2441
SduI	GDGCHC	2 cut(s)	1770, 2297
SfaNI	GCATC	2 cut(s)	2030, 2061
SfcI	CTRYAG	1 cut(s)	2337
SinI	GGWCC	5 cut(s)	249, 597, 1125, 1360, 1473
SmiMI	CAYNNNNRTG	1 cut(s)	2313
SmlI	CTYRAG	5 cut(s)	384, 1260, 1804, 1931, 2561
SmoI	CTYRAG	5 cut(s)	384, 1260, 1804, 1931, 2561
StyD4I	CCNGG	8 cut(s)	566, 592, 1442, 1468, 1758, 2054, 2391, 2439
StyI	CCWWGG	2 cut(s)	615, 1491
TaaI	ACNGT	7 cut(s)	484, 496, 695, 1360, 1372, 1571, 1972
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	5 cut(s)	27, 33, 177, 1053, 1839
TatI	WGTACW	2 cut(s)	695, 1571
TauI	GCSGC	2 cut(s)	507, 1383
Tru1I	TTAA	5 cut(s)	843, 1745, 1877, 2108, 2348
Tru9I	TTAA	5 cut(s)	843, 1745, 1877, 2108, 2348
TscAI	CASTG	5 cut(s)	331, 1207, 1770, 1975, 2464
TseFI	GTSAC	3 cut(s)	863, 2238, 2491
TseI	GCWGC	7 cut(s)	21, 165, 333, 336, 2015, 2018, 2300
Tsp45I	GTSAC	3 cut(s)	863, 2238, 2491
TspGWI	ACGGA	5 cut(s)	94, 139, 970, 1015, 2303
TspRI	CASTG	5 cut(s)	331, 1207, 1770, 1975, 2464
VpaK11BI	GGWCC	5 cut(s)	249, 597, 1125, 1360, 1473
XapI	RAATTY	4 cut(s)	141, 1017, 2110, 2408
XceI	RCATGY	1 cut(s)	1988
XmiI	GTMKAC	2 cut(s)	479, 1813
XmnI	GAANNNNTTC	5 cut(s)	145, 365, 1021, 1241, 2132
Zsp2I	ATGCAT	3 cut(s)	551, 1427, 1990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.