Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Forward (+)

9688577 .. 9689296

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0059200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAAGTCGAAGTACACATATGTGCCCTGTTCATATTCATCAGTACCAACGTTGGAGATCTAAACCCCTCACTCTTTTCTCTTCAAACTCATCACTTCCTCTGCACATACACCATTGTCTCTCCAAAACGAGAGCACAGTTTCACAGTGAATTACTTGATAAACTCATGTGGGTTGTCACCGGAAGGAGCCATTTCAGCATCCAAGCGGGTCAAGTTGGGTTCCGGAGCAAGAGCAGACTCCGTTCTGGCCCATTTCAGAAACCATGGCTTCTCTGGAACCCAGATCGCACAGGTTATTAGGTCATGCCCAAAATTCCTTGCTGCCGATTTTGAGAAAACCCTTTTGCCAAAGCTCGAGTATTTAAGCTCTGTTGGACTTTCAAGGCAGGACCTTGCCAGAGTTGTGTCTTCGAATCCAAATATTTTGGGACACAGCTTGGAGAAACAGATTATACCGGTACATAAATTTATTAGGAGTTTGCTTTCTGAGCAAGATGTTATTGCAGTTTTGAAGCGTGGCTCTCGGATTTTTTCGTCTAACCAGTGTAATATTCTGGTGCCAAATATTAAGCTTTTGATAGAATTGGGTATGCCGCAATCATGCATTTCTCGGTTGTTTACTCATTGTACTAATGATGTGATTGTAAACCATGAAAAGTTTGCGAAAGCTGTGCATGAGGCCAAGGAAATGGGATTTGATATGGAAAACTCGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

239

Amino Acids

26.55

Weight (kDa)

8.86

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	84 - 236	8.6e-23	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	2 cut(s)	208, 596
AclI	AACGTT	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	314, 467
AfaI	GTAC	4 cut(s)	15, 46, 462, 631
AgeI	ACCGGT	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	86, 384, 514
AleI	CACNNNNGTG	1 cut(s)	21
AluBI	AGCT	5 cut(s)	355, 369, 438, 574, 671
AluI	AGCT	5 cut(s)	355, 369, 438, 574, 671
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	124
Ama87I	CYCGRG	2 cut(s)	356, 712
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	2 cut(s)	249, 681
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	314, 467
AsiGI	ACCGGT	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	250, 391
AsuHPI	GGTGA	1 cut(s)	171
AsuII	TTCGAA	1 cut(s)	413
AvaI	CYCGRG	2 cut(s)	356, 712
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	559
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BcoDI	GTCTC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	2 cut(s)	324, 596
BlsI	GCNGC	2 cut(s)	325, 597
Bme18I	GGWCC	1 cut(s)	391
BmeT110I	CYCGRG	2 cut(s)	356, 712
BmgT120I	GGNCC	2 cut(s)	250, 391
BmiI	GGNNCC	4 cut(s)	190, 223, 280, 561
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	265, 684
BsaWI	WCCGGW	3 cut(s)	181, 224, 457
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	544
BseAI	TCCGGA	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	265, 684
BseGI	GGATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	544
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	251, 683
BshNI	GGYRCC	1 cut(s)	559
BshTI	ACCGGT	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	2 cut(s)	356, 712
BsiSI	CCGG	3 cut(s)	182, 225, 458
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	251, 683
BsoBI	CYCGRG	2 cut(s)	356, 712
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	28, 138
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	58, 285
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	2 cut(s)	208, 596
BspANI	GGCC	2 cut(s)	251, 683
BspCNI	CTCAG	1 cut(s)	481
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	4 cut(s)	190, 223, 280, 561
BspT104I	TTCGAA	1 cut(s)	413
BspT107I	GGYRCC	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	265, 684
BssMI	GATC	2 cut(s)	58, 285
BssT1I	CCWWGG	2 cut(s)	265, 684
Bst4CI	ACNGT	2 cut(s)	140, 148
Bst6I	CTCTTC	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	200
BstKTI	GATC	2 cut(s)	61, 288
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	58, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 490
BstSLI	GKGCMC	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	251, 683
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	153, 551
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	250, 391
Csp6I	GTAC	4 cut(s)	14, 45, 461, 630
CspAI	ACCGGT	1 cut(s)	457
CviAII	CATG	6 cut(s)	168, 266, 306, 603, 653, 677
CviQI	GTAC	4 cut(s)	14, 45, 461, 630
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	2 cut(s)	60, 287
DpnII	GATC	2 cut(s)	58, 285
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	265, 684
Eco47I	GGWCC	1 cut(s)	391
Eco88I	CYCGRG	2 cut(s)	356, 712
EcoO109I	RGGNCCY	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	265, 684
EcoT22I	ATGCAT	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	265, 684
FaeI	CATG	6 cut(s)	171, 269, 309, 606, 656, 680
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	6 cut(s)	167, 265, 305, 602, 652, 676
FauI	CCCGC	1 cut(s)	201
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	324, 596
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	324, 596
GluI	GCNGC	2 cut(s)	324, 596
HaeIII	GGCC	2 cut(s)	251, 683
HapII	CCGG	3 cut(s)	182, 225, 458
Hin1II	CATG	6 cut(s)	171, 269, 309, 606, 656, 680
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	2 cut(s)	239, 415
HpaII	CCGG	3 cut(s)	182, 225, 458
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	3 cut(s)	16, 621, 649
Hpy188I	TCNGA	3 cut(s)	260, 490, 528
Hpy188III	TCNNGA	3 cut(s)	225, 276, 714
Hpy8I	GTNNAC	3 cut(s)	16, 621, 649
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	140, 148
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	105, 506, 606, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 490
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	171, 269, 309, 606, 656, 680
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	58, 285
LmnI	GCTCC	2 cut(s)	188, 227
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	209
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	2 cut(s)	60, 287
MboI	GATC	2 cut(s)	58, 285
MboII	GAAGA	2 cut(s)	74, 402
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	28, 138
MluCI	AATT	4 cut(s)	151, 314, 467, 584
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	34, 355
MnlI	CCTC	3 cut(s)	79, 110, 673
Mph1103I	ATGCAT	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	2 cut(s)	365, 570
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	3 cut(s)	182, 225, 458
MwoI	GCNNNNNNNGC	2 cut(s)	197, 490
NcoI	CCATGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	2 cut(s)	58, 285
NlaIII	CATG	6 cut(s)	171, 269, 309, 606, 656, 680
NlaIV	GGNNCC	4 cut(s)	190, 223, 280, 561
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	608
NspV	TTCGAA	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	21
PaeR7I	CTCGAG	2 cut(s)	356, 712
PfeI	GAWTC	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	325, 597
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	391
Psp1406I	AACGTT	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	190, 223, 280, 561
PspPI	GGNCC	2 cut(s)	250, 391
PspPPI	RGGWCCY	1 cut(s)	391
PspXI	VCTCGAGB	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	4 cut(s)	15, 46, 462, 631
RsaNI	GTAC	4 cut(s)	14, 45, 461, 630
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	365, 570
SatI	GCNGC	2 cut(s)	324, 596
Sau3AI	GATC	2 cut(s)	58, 285
Sau96I	GGNCC	2 cut(s)	250, 391
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	28, 138
SetI	ASST	9 cut(s)	54, 297, 305, 357, 371, 396, 440, 576, 673
SfaNI	GCATC	1 cut(s)	209
Sfr274I	CTCGAG	2 cut(s)	356, 712
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	1 cut(s)	391
SlaI	CTCGAG	2 cut(s)	356, 712
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	356, 712
SmoI	CTYRAG	2 cut(s)	356, 712
Sse9I	AATT	4 cut(s)	151, 314, 467, 584
SsiI	CCGC	2 cut(s)	208, 596
SspI	AATATT	3 cut(s)	424, 553, 568
StyI	CCWWGG	2 cut(s)	265, 684
TaaI	ACNGT	2 cut(s)	140, 148
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	4 cut(s)	9, 357, 413, 713
TasI	AATT	4 cut(s)	151, 314, 467, 584
TatI	WGTACW	2 cut(s)	13, 629
TauI	GCSGC	1 cut(s)	598
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	365, 570
Tru9I	TTAA	2 cut(s)	365, 570
TscAI	CASTG	2 cut(s)	153, 551
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	3 cut(s)	22, 28, 669
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	153, 551
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	2 cut(s)	314, 467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272
XhoI	CTCGAG	2 cut(s)	356, 712
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.