Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

74589062 .. 74592585

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG537600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAGGATAGTGAAGGAGGCATTGCACTTGTCAACGGTCCCCTCTACTGTTGCGTGCCGCCATGTGGAGCAGAAGAGGGTTCTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGGGTGGATATCAGGAACCGGATGTGTTGGAATTGAACTGTACATCGCTAACAAAAACTTCTGATATTTTCGCTAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAGATGGGACTAAGATGATGTTGATAATAGCTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTCCATGACCTTTTCATGCTCACAACATACCCATTCTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATCGACTTAGCTGATCGTTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTACCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGAGATATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTCTTGCTCTGGTGAAAAAACAGGAGATTGATATTGTGAGAATTGATCACATGGCCATTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAATATGCTCTGCTGCAAAGCATTTCCGTGGTGTGAAGAAAGATACAACTATAGGAGAGTTAAACAAATCTTACATAGACATCTGCAAAGCAACACTAATTCCCCCGGTTGGGAGTTTTGAATTTTCAAGTATGTGCAAAGTGCTAAATGACCAGGGCCTCCTCAAACTCAGTGGCCAATCCAGAGATATAAAATCCAAGAGAGTGACATTGAATGTAGATGAAGGGGACATCACATTTGCATTGCAGGGAATCCGGTTTTTTCGGACTTGTCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

414

Amino Acids

46.13

Weight (kDa)

8.84

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	39 - 156	8.2e-13	AAA domain
Cdc6-ORC-like_ATPase_lid	PF22606	197 - 254	1.4e-11	Cdc6/ORC-like, ATPase lid domain
WHD_Cdc6	PF09079	310 - 402	4.1e-20	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	575, 965
AasI	GACNNNNNNGTC	2 cut(s)	157, 913
AccI	GTMKAC	1 cut(s)	490
AciI	CCGC	2 cut(s)	58, 138
AclWI	GGATC	1 cut(s)	606
AcoI	YGGCCR	2 cut(s)	888, 1138
AcsI	RAATTY	2 cut(s)	787, 1085
AcuI	CTGAAG	2 cut(s)	329, 530
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	4 cut(s)	64, 152, 1073, 1074
AgsI	TTSAA	6 cut(s)	244, 656, 913, 1085, 1092, 1177
AjnI	CCWGG	3 cut(s)	145, 731, 1116
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	7 cut(s)	187, 317, 404, 524, 719, 830, 836
AluI	AGCT	7 cut(s)	187, 317, 404, 524, 719, 830, 836
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	606
AoxI	GGCC	4 cut(s)	117, 888, 1120, 1138
ApeKI	GCWGC	3 cut(s)	692, 695, 977
ApoI	RAATTY	2 cut(s)	787, 1085
ArsI	GACNNNNNNTTYG	4 cut(s)	533, 565, 1184, 1216
Asp700I	GAANNNNTTC	1 cut(s)	809
AspS9I	GGNCC	3 cut(s)	37, 150, 1120
AsuC2I	CCSGG	3 cut(s)	121, 437, 1070
AsuHPI	GGTGA	3 cut(s)	205, 859, 909
AvaII	GGWCC	2 cut(s)	37, 150
BalI	TGGCCA	2 cut(s)	890, 1140
BbsI	GAAGAC	1 cut(s)	935
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	679, 682, 964
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	3 cut(s)	147, 733, 1118
BciVI	GTATCC	1 cut(s)	922
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	3 cut(s)	121, 437, 1070
BfmI	CTRYAG	1 cut(s)	1014
BfuI	GTATCC	1 cut(s)	922
BisI	GCNGC	4 cut(s)	58, 693, 696, 978
BlsI	GCNGC	4 cut(s)	59, 694, 697, 979
Bme1390I	CCNGG	6 cut(s)	121, 147, 437, 733, 1070, 1118
Bme18I	GGWCC	2 cut(s)	37, 150
BmgT120I	GGNCC	3 cut(s)	37, 150, 1120
BmiI	GGNNCC	3 cut(s)	39, 151, 225
BmrFI	CCNGG	6 cut(s)	121, 147, 437, 733, 1070, 1118
BmsI	GCATC	2 cut(s)	707, 738
BpiI	GAAGAC	1 cut(s)	935
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
BpmI	CTGGAG	3 cut(s)	104, 723, 816
BpuEI	CTTGAG	2 cut(s)	466, 593
BpuMI	CCSGG	3 cut(s)	121, 437, 1070
BsaJI	CCNNGG	5 cut(s)	146, 168, 991, 1068, 1117
BsaWI	WCCGGW	3 cut(s)	152, 226, 1218
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 152, 1073, 1074
Bse1I	ACTGG	1 cut(s)	920
Bse3DI	GCAATG	3 cut(s)	20, 891, 1205
BseBI	CCWGG	3 cut(s)	147, 733, 1118
BseDI	CCNNGG	5 cut(s)	146, 168, 991, 1068, 1117
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	4 cut(s)	64, 152, 1073, 1074
BseMI	GCAATG	3 cut(s)	20, 891, 1205
BseMII	CTCAG	3 cut(s)	383, 807, 1147
BseNI	ACTGG	1 cut(s)	920
BseRI	GAGGAG	1 cut(s)	1115
BseXI	GCAGC	3 cut(s)	679, 682, 964
BshFI	GGCC	4 cut(s)	119, 890, 1122, 1140
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	6 cut(s)	120, 153, 227, 436, 1070, 1219
BslFI	GGGAC	4 cut(s)	23, 163, 394, 1205
BslI	CCNNNNNNNGG	4 cut(s)	64, 152, 1073, 1074
BsmFI	GGGAC	4 cut(s)	23, 163, 394, 1205
BsnI	GGCC	4 cut(s)	119, 890, 1122, 1140
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	526, 598, 880
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	58, 138
BspANI	GGCC	4 cut(s)	119, 890, 1122, 1140
BspCNI	CTCAG	3 cut(s)	382, 808, 1146
BspLI	GGNNCC	3 cut(s)	39, 151, 225
BspPI	GGATC	1 cut(s)	606
BsrDI	GCAATG	3 cut(s)	20, 891, 1205
BsrGI	TGTACA	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	920
BssECI	CCNNGG	5 cut(s)	146, 168, 991, 1068, 1117
BssMI	GATC	3 cut(s)	526, 598, 880
BssNAI	GTATAC	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	491
Bst2UI	CCWGG	3 cut(s)	147, 733, 1118
Bst4CI	ACNGT	4 cut(s)	37, 49, 248, 649
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	99
BstAUI	TGTACA	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	7 cut(s)	282, 369, 384, 520, 594, 816, 1133
BstDSI	CCRYGG	2 cut(s)	168, 991
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	529, 601, 883
BstMBI	GATC	3 cut(s)	526, 598, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	3 cut(s)	147, 733, 1118
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	6 cut(s)	119, 145, 435, 731, 1068, 1116
BstSFI	CTRYAG	1 cut(s)	1014
BstV1I	GCAGC	3 cut(s)	679, 682, 964
BstV2I	GAAGAC	1 cut(s)	935
BstZ17I	GTATAC	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	922
BsuRI	GGCC	4 cut(s)	119, 890, 1122, 1140
BtgI	CCRYGG	2 cut(s)	168, 991
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	3 cut(s)	447, 645, 1141
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	37, 150, 1120
Csp6I	GTAC	1 cut(s)	249
CspCI	CAANNNNNGTGG	4 cut(s)	648, 683, 1117, 1152
CviAII	CATG	7 cut(s)	62, 99, 169, 449, 460, 662, 886
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	7 cut(s)	282, 369, 384, 520, 594, 816, 1133
DpnI	GATC	3 cut(s)	528, 600, 882
DpnII	GATC	3 cut(s)	526, 598, 880
DrdI	GACNNNNNNGTC	2 cut(s)	157, 913
DseDI	GACNNNNNNGTC	2 cut(s)	157, 913
EaeI	YGGCCR	2 cut(s)	888, 1138
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	37, 150
Eco57I	CTGAAG	2 cut(s)	329, 530
EcoO109I	RGGNCCY	1 cut(s)	1120
EcoRII	CCWGG	3 cut(s)	145, 731, 1116
EcoRV	GATATC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	2 cut(s)	104, 667
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	7 cut(s)	65, 102, 172, 452, 463, 665, 889
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	4 cut(s)	23, 163, 394, 1205
FatI	CATG	7 cut(s)	61, 98, 168, 448, 459, 661, 885
FauI	CCCGC	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	490
Fnu4HI	GCNGC	4 cut(s)	58, 693, 696, 978
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	4 cut(s)	58, 693, 696, 978
GluI	GCNGC	4 cut(s)	58, 693, 696, 978
GsuI	CTGGAG	3 cut(s)	104, 723, 816
HaeIII	GGCC	4 cut(s)	119, 890, 1122, 1140
HapII	CCGG	6 cut(s)	120, 153, 227, 436, 1070, 1219
Hin1II	CATG	7 cut(s)	65, 102, 172, 452, 463, 665, 889
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	5 cut(s)	604, 613, 770, 805, 1215
HpaII	CCGG	6 cut(s)	120, 153, 227, 436, 1070, 1219
HphI	GGTGA	3 cut(s)	205, 859, 909
Hpy166II	GTNNAC	2 cut(s)	33, 491
Hpy188I	TCNGA	6 cut(s)	271, 348, 376, 603, 817, 1230
Hpy188III	TCNNGA	7 cut(s)	83, 221, 483, 610, 702, 1146, 1238
Hpy8I	GTNNAC	2 cut(s)	33, 491
HpyAV	CCTTC	3 cut(s)	7, 109, 1181
HpyCH4III	ACNGT	4 cut(s)	37, 49, 248, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	7 cut(s)	282, 369, 384, 520, 594, 816, 1133
Hsp92II	CATG	7 cut(s)	65, 102, 172, 452, 463, 665, 889
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	3 cut(s)	526, 598, 880
LmnI	GCTCC	3 cut(s)	67, 450, 835
Lsp1109I	GCAGC	3 cut(s)	679, 682, 964
LweI	GCATC	2 cut(s)	707, 738
MaeIII	GTNAC	2 cut(s)	915, 1168
MalI	GATC	3 cut(s)	528, 600, 882
MboI	GATC	3 cut(s)	526, 598, 880
MboII	GAAGA	4 cut(s)	85, 335, 935, 1012
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	1 cut(s)	447
MlsI	TGGCCA	2 cut(s)	890, 1140
MluCI	AATT	9 cut(s)	196, 239, 350, 556, 741, 787, 876, 1062, 1085
MluNI	TGGCCA	2 cut(s)	890, 1140
MmeI	TCCRAC	2 cut(s)	216, 393
Mox20I	TGGCCA	2 cut(s)	890, 1140
Mph1103I	ATGCAT	2 cut(s)	104, 667
MroXI	GAANNNNTTC	1 cut(s)	809
MscI	TGGCCA	2 cut(s)	890, 1140
MseI	TTAA	4 cut(s)	422, 554, 785, 1025
MslI	CAYNNNNRTG	1 cut(s)	990
Msp20I	TGGCCA	2 cut(s)	890, 1140
MspI	CCGG	6 cut(s)	120, 153, 227, 436, 1070, 1219
MspR9I	CCNGG	6 cut(s)	121, 147, 437, 733, 1070, 1118
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	3 cut(s)	147, 733, 1118
MwoI	GCNNNNNNNGC	1 cut(s)	99
NciI	CCSGG	3 cut(s)	121, 437, 1070
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	526, 598, 880
NlaIII	CATG	7 cut(s)	65, 102, 172, 452, 463, 665, 889
NlaIV	GGNNCC	3 cut(s)	39, 151, 225
NmuCI	GTSAC	2 cut(s)	915, 1168
NsiI	ATGCAT	2 cut(s)	104, 667
NspI	RCATGY	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	5 cut(s)	604, 613, 770, 805, 1215
PfoI	TCCNGGA	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	59, 694, 697, 979
PsiI	TTATAA	2 cut(s)	575, 965
Psp6I	CCWGG	3 cut(s)	145, 731, 1116
PspGI	CCWGG	3 cut(s)	145, 731, 1116
PspN4I	GGNNCC	3 cut(s)	39, 151, 225
PspPI	GGNCC	3 cut(s)	37, 150, 1120
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	990
SaqAI	TTAA	4 cut(s)	422, 554, 785, 1025
SatI	GCNGC	4 cut(s)	58, 693, 696, 978
Sau3AI	GATC	3 cut(s)	526, 598, 880
Sau96I	GGNCC	3 cut(s)	37, 150, 1120
ScrFI	CCNGG	6 cut(s)	121, 147, 437, 733, 1070, 1118
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	707, 738
SfcI	CTRYAG	1 cut(s)	1014
SinI	GGWCC	2 cut(s)	37, 150
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	3 cut(s)	481, 608, 1238
SmoI	CTYRAG	3 cut(s)	481, 608, 1238
Sse9I	AATT	9 cut(s)	196, 239, 350, 556, 741, 787, 876, 1062, 1085
SsiI	CCGC	2 cut(s)	58, 138
StyD4I	CCNGG	6 cut(s)	119, 145, 435, 731, 1068, 1116
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	37, 49, 248, 649
TaqI	TCGA	1 cut(s)	516
TasI	AATT	9 cut(s)	196, 239, 350, 556, 741, 787, 876, 1062, 1085
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	5 cut(s)	604, 613, 770, 805, 1215
Tru1I	TTAA	4 cut(s)	422, 554, 785, 1025
Tru9I	TTAA	4 cut(s)	422, 554, 785, 1025
TscAI	CASTG	3 cut(s)	447, 652, 1141
TseFI	GTSAC	2 cut(s)	915, 1168
TseI	GCWGC	3 cut(s)	692, 695, 977
Tsp45I	GTSAC	2 cut(s)	915, 1168
TspDTI	ATGAA	3 cut(s)	448, 780, 1200
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	3 cut(s)	447, 652, 1141
VpaK11BI	GGWCC	2 cut(s)	37, 150
XapI	RAATTY	2 cut(s)	787, 1085
XceI	RCATGY	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	809
Zsp2I	ATGCAT	2 cut(s)	104, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.