Rroxscaffold_1G00011800

Cell division control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002119
Physical Location & Seq
Reverse (-)
14750459 .. 14753586
3128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011800.1

Sequence Viewer

Length: 672 bp
ATGATGTTGATAATAGCTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTCCATGACCTTTTCATGCTCACAACATACCCATTTTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATTGACTTAGCTGATCGTTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTACCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGAGATATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTGTTGCTCTGGTGAAAAAACAGGAGATTGATATTATTATAATGTGCTCTGCTGCAAAGCATTTCCGTGGTGTGAAGAAAGATACAACTATAGGAGAGGGCCTCCTCAAACTCAGTGGCCAATCCAGAGATATAAAATCCAAGAGAGTGACATTGAATGTAGATGAAGGGGACATCACATTTGCATTGCAGGGAATCCGGTTTTTTCGGACTTGTCTTGAGTAA

Protein Analysis

223

Amino Acids

25.0

Weight (kDa)

8.5

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cdc6-ORC-like_ATPase_lid PF22606 68 - 125 5e-12 Cdc6/ORC-like, ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 488
AccI GTMKAC 1 cut(s) 103
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 143
AgsI TTSAA 3 cut(s) 96, 269, 604
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 5 cut(s) 17, 137, 332, 443, 449
AluI AGCT 5 cut(s) 17, 137, 332, 443, 449
Alw21I GWGCWC 2 cut(s) 60, 497
AlwI GGATC 1 cut(s) 219
AoxI GGCC 2 cut(s) 547, 565
ApeKI GCWGC 3 cut(s) 305, 308, 500
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 4 cut(s) 146, 178, 611, 643
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 547
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 472
BalI TGGCCA 1 cut(s) 567
Bbv12I GWGCWC 2 cut(s) 60, 497
BbvI GCAGC 3 cut(s) 292, 295, 487
BciT130I CCWGG 1 cut(s) 346
BcnI CCSGG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 537
BisI GCNGC 3 cut(s) 306, 309, 501
BlsI GCNGC 3 cut(s) 307, 310, 502
Bme1390I CCNGG 2 cut(s) 50, 346
BmgT120I GGNCC 1 cut(s) 547
BmrFI CCNGG 2 cut(s) 50, 346
BmsI GCATC 2 cut(s) 320, 351
BplI GAGNNNNNCTC 4 cut(s) 316, 348, 534, 566
BpmI CTGGAG 2 cut(s) 336, 429
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 632
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 420, 574
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 3 cut(s) 292, 295, 487
BshFI GGCC 2 cut(s) 549, 567
BsiHKAI GWGCWC 2 cut(s) 60, 497
BsiSI CCGG 2 cut(s) 49, 646
BslFI GGGAC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 632
BsnI GGCC 2 cut(s) 549, 567
Bsp1286I GDGCHC 2 cut(s) 60, 497
Bsp143I GATC 2 cut(s) 139, 211
BspANI GGCC 2 cut(s) 549, 567
BspCNI CTCAG 2 cut(s) 421, 573
BspPI GGATC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 632
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 2 cut(s) 139, 211
BssNAI GTATAC 1 cut(s) 104
Bst1107I GTATAC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 1 cut(s) 262
BstDEI CTNAG 4 cut(s) 133, 207, 429, 560
BstDSI CCRYGG 1 cut(s) 514
BstKTI GATC 2 cut(s) 142, 214
BstMBI GATC 2 cut(s) 139, 211
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 48, 344
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 3 cut(s) 292, 295, 487
BstZ17I GTATAC 1 cut(s) 104
BsuRI GGCC 2 cut(s) 549, 567
BtgI CCRYGG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 258, 568
Cfr13I GGNCC 1 cut(s) 547
CspCI CAANNNNNGTGG 4 cut(s) 261, 296, 544, 579
CviAII CATG 3 cut(s) 62, 73, 275
CviJI RGCY 9 cut(s) 17, 137, 178, 241, 332, 443, 449, 549, 567
CviKI_1 RGCY 9 cut(s) 17, 137, 178, 241, 332, 443, 449, 549, 567
DdeI CTNAG 4 cut(s) 133, 207, 429, 560
DpnI GATC 2 cut(s) 141, 213
DpnII GATC 2 cut(s) 139, 211
EaeI YGGCCR 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 344
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 3 cut(s) 65, 76, 278
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 632
FatI CATG 3 cut(s) 61, 72, 274
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 306, 309, 501
Fsp4HI GCNGC 3 cut(s) 306, 309, 501
GluI GCNGC 3 cut(s) 306, 309, 501
GsuI CTGGAG 2 cut(s) 336, 429
HaeIII GGCC 2 cut(s) 549, 567
HapII CCGG 2 cut(s) 49, 646
Hin1II CATG 3 cut(s) 65, 76, 278
HinfI GANTC 5 cut(s) 217, 226, 383, 418, 642
HpaII CCGG 2 cut(s) 49, 646
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 3 cut(s) 216, 430, 657
Hpy188III TCNNGA 5 cut(s) 96, 223, 315, 573, 665
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 608
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 7 cut(s) 125, 278, 311, 353, 503, 632, 637
HpyF3I CTNAG 4 cut(s) 133, 207, 429, 560
Hsp92II CATG 3 cut(s) 65, 76, 278
Kzo9I GATC 2 cut(s) 139, 211
LmnI GCTCC 2 cut(s) 63, 448
Lsp1109I GCAGC 3 cut(s) 292, 295, 487
LweI GCATC 2 cut(s) 320, 351
MaeIII GTNAC 1 cut(s) 595
MalI GATC 2 cut(s) 141, 213
MboI GATC 2 cut(s) 139, 211
MboII GAAGA 1 cut(s) 535
MfeI CAATTG 2 cut(s) 126, 354
MhlI GDGCHC 2 cut(s) 60, 497
MlsI TGGCCA 1 cut(s) 567
MluCI AATT 4 cut(s) 126, 169, 354, 400
MluNI TGGCCA 1 cut(s) 567
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 5 cut(s) 231, 318, 538, 560, 563
Mox20I TGGCCA 1 cut(s) 567
Mph1103I ATGCAT 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 422
MscI TGGCCA 1 cut(s) 567
MseI TTAA 3 cut(s) 35, 167, 398
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 567
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 49, 646
MspR9I CCNGG 2 cut(s) 50, 346
MunI CAATTG 2 cut(s) 126, 354
MvaI CCWGG 1 cut(s) 346
NciI CCSGG 1 cut(s) 50
NdeII GATC 2 cut(s) 139, 211
NlaIII CATG 3 cut(s) 65, 76, 278
NmuCI GTSAC 1 cut(s) 595
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 5 cut(s) 217, 226, 383, 418, 642
PfoI TCCNGGA 1 cut(s) 344
PkrI GCNGC 3 cut(s) 307, 310, 502
PsiI TTATAA 2 cut(s) 188, 488
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspPI GGNCC 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 449
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 3 cut(s) 35, 167, 398
SatI GCNGC 3 cut(s) 306, 309, 501
Sau3AI GATC 2 cut(s) 139, 211
Sau96I GGNCC 1 cut(s) 547
ScrFI CCNGG 2 cut(s) 50, 346
SduI GDGCHC 2 cut(s) 60, 497
SetI ASST 7 cut(s) 19, 69, 139, 256, 334, 445, 451
SfaNI GCATC 2 cut(s) 320, 351
SfcI CTRYAG 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 221, 665
SmoI CTYRAG 2 cut(s) 221, 665
Sse9I AATT 4 cut(s) 126, 169, 354, 400
StyD4I CCNGG 2 cut(s) 48, 344
TaaI ACNGT 1 cut(s) 262
TasI AATT 4 cut(s) 126, 169, 354, 400
TfiI GAWTC 5 cut(s) 217, 226, 383, 418, 642
Tru1I TTAA 3 cut(s) 35, 167, 398
Tru9I TTAA 3 cut(s) 35, 167, 398
TscAI CASTG 3 cut(s) 60, 265, 568
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 3 cut(s) 305, 308, 500
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 3 cut(s) 61, 393, 627
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 3 cut(s) 60, 265, 568
XapI RAATTY 1 cut(s) 400
XceI RCATGY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.