Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

18977980 .. 18979155

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGACTTCGGAATCGACGGCGGAAGGAATTGACTCACCGACTAAGAGGAGAATCAGAGTTTATGTTTCTTCAGCTGAGGATATGGGTGGTAGGGATACTTCAAAGGAACTGGGTGGTAGACTTTTGTTACCAGATGGTCTGGACAGTGTTGTCAGTACTTCAGTAGAGGTTCGAAGGAACTTTTTGTTAGCTGACGGTCAGGAGAGGGGTGTGGGTACTGCAGTGGAGGCTAGAAAAAGAGTGAAGGATACATTAATGTCTTTTAGTACCGAGTGTTGTAGACTCATGCAAAAGGGAGACCGGAGGTTTCATGACACTGCCTATCATATTGTGAAAAACAGAGGACAGTTTGTCAATACAGACAAGATTTTTGGAAATGTCCCAGGAGTGAAAGTGGGCGACAAGTTTCGGTATAGGGTGCAACTAAGAATGATTGGTTTACATGCCCCTCTGATGAATGGGATCGATTATCGCAAGTATCGGGGTAAGCTGTATGCTACTAGTATTGTGGCTTCTGGTGATTATGAAGATGAGCTGCAGGAAAGGCATTCAATTGTTTATGTTGGTCAAGGAGCAGGTGCGAAGATTAATCAAGTGCTTGAAGGGGCTAATTTGGCTTTGGCTAATAGTATTGATCTTCAGAATCCTGTGAGAGTGATCCGTACGTTCAATTTGACAAGGGATGTTGCAGTTCAATTTGATGTTGCAGTTAATATGCTATTGGATGTTGTAGTTCAATTTGTTAAGGCTGTATATGATTCATGCAATATGCTATTGGATGTTGTAGTTCAATTTGTTAAGGCTGTACATGATTCATGCAATATGCTATTGGATGTTGTAGTTCAATTTGATAAGGCTGTATATGATTCATGCAATATGCTATTGGATGTTGTAGTTCAATTTGTTAAGGCTGTACATGATTCATGCAATATGCTATTGGATGTTAAGGCTGTATATGATTCATGCAATATGCTATTGGATGTTGTAGTTCGGTTTGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

334

Amino Acids

37.28

Weight (kDa)

6.6

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	124 - 225	2e-30	SAD/SRA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
AasI	GACNNNNNNGTC	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	566
AccI	GTMKAC	2 cut(s)	118, 280
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	470, 652
AcuI	CTGAAG	3 cut(s)	54, 144, 623
AfaI	GTAC	6 cut(s)	157, 217, 268, 664, 807, 915
AgsI	TTSAA	9 cut(s)	102, 552, 602, 670, 695, 737, 791, 845, 899
AhdI	GACNNNNNGTC	1 cut(s)	350
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	4 cut(s)	74, 191, 490, 535
AluI	AGCT	4 cut(s)	74, 191, 490, 535
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	470, 652
ApeKI	GCWGC	1 cut(s)	535
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AseI	ATTAAT	2 cut(s)	254, 588
AsuHPI	GGTGA	2 cut(s)	27, 530
AsuII	TTCGAA	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BarI	GAAGNNNNNNTAC	4 cut(s)	82, 114, 496, 528
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	2 cut(s)	88, 241
BcoDI	GTCTC	1 cut(s)	291
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	231, 501
BfmI	CTRYAG	2 cut(s)	219, 536
BfuAI	ACCTGC	1 cut(s)	566
BfuI	GTATCC	2 cut(s)	88, 241
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
BmcAI	AGTACT	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	384
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	7 cut(s)	688, 730, 784, 838, 892, 946, 985
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	301
BsiWI	CGTACG	1 cut(s)	662
BslFI	GGGAC	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	547
Bso31I	GGTCTC	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1407I	TGTACA	2 cut(s)	805, 913
Bsp143I	GATC	3 cut(s)	462, 634, 657
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	310
BspMAI	CTGCAG	2 cut(s)	223, 540
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	470, 652
BspT104I	TTCGAA	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	291
BsrGI	TGTACA	2 cut(s)	805, 913
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	462, 634, 657
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	146, 197, 348
BstAUI	TGTACA	2 cut(s)	805, 913
BstBI	TTCGAA	1 cut(s)	172
BstDEI	CTNAG	3 cut(s)	42, 75, 425
BstF5I	GGATG	7 cut(s)	688, 730, 784, 838, 892, 946, 985
BstKTI	GATC	3 cut(s)	465, 637, 660
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	3 cut(s)	462, 634, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 544, 614
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	219, 536
BstV1I	GCAGC	1 cut(s)	522
Bsu15I	ATCGAT	1 cut(s)	465
BsuI	GTATCC	2 cut(s)	88, 241
BsuTUI	ATCGAT	1 cut(s)	465
BtsCI	GGATG	7 cut(s)	688, 730, 784, 838, 892, 946, 985
BtsI	GCAGTG	2 cut(s)	228, 315
BtsIMutI	CAGTG	3 cut(s)	151, 228, 315
BveI	ACCTGC	1 cut(s)	566
CciI	TCATGA	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	465
Csp6I	GTAC	6 cut(s)	156, 216, 267, 663, 806, 914
CviQI	GTAC	6 cut(s)	156, 216, 267, 663, 806, 914
DdeI	CTNAG	3 cut(s)	42, 75, 425
DpnI	GATC	3 cut(s)	464, 636, 659
DpnII	GATC	3 cut(s)	462, 634, 657
DrdI	GACNNNNNNGTC	1 cut(s)	149
DriI	GACNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	149
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EciI	GGCGGA	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	291
Eco57I	CTGAAG	3 cut(s)	54, 144, 623
EcoRII	CCWGG	1 cut(s)	382
FaqI	GGGAC	1 cut(s)	365
FblI	GTMKAC	2 cut(s)	118, 280
Fnu4HI	GCNGC	1 cut(s)	536
FokI	GGATG	7 cut(s)	695, 737, 791, 845, 899, 953, 992
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	2 cut(s)	231, 501
GluI	GCNGC	1 cut(s)	536
HapII	CCGG	1 cut(s)	301
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	2 cut(s)	27, 530
Hpy166II	GTNNAC	3 cut(s)	119, 281, 440
Hpy188I	TCNGA	4 cut(s)	10, 56, 453, 642
Hpy188III	TCNNGA	3 cut(s)	140, 200, 311
Hpy8I	GTNNAC	3 cut(s)	119, 281, 440
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	17, 168, 238, 596
HpyCH4III	ACNGT	3 cut(s)	146, 197, 348
HpyCH4IV	ACGT	1 cut(s)	665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 544, 614
HpyF3I	CTNAG	3 cut(s)	42, 75, 425
HpySE526I	ACGT	1 cut(s)	665
Kzo9I	GATC	3 cut(s)	462, 634, 657
LmnI	GCTCC	1 cut(s)	572
Lsp1109I	GCAGC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	231, 501
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	3 cut(s)	464, 636, 659
MboI	GATC	3 cut(s)	462, 634, 657
MboII	GAAGA	4 cut(s)	60, 539, 595, 629
MfeI	CAATTG	1 cut(s)	552
MluCI	AATT	9 cut(s)	27, 552, 610, 670, 695, 737, 791, 845, 899
MlyI	GAGTC	2 cut(s)	26, 276
MnlI	CCTC	8 cut(s)	39, 70, 160, 198, 220, 297, 335, 459
MseI	TTAA	7 cut(s)	254, 588, 711, 744, 798, 906, 945
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	227, 544, 614
NdeII	GATC	3 cut(s)	462, 634, 657
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	172
PagI	TCATGA	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	566
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	8 cut(s)	11, 51, 643, 758, 812, 866, 920, 959
Pfl23II	CGTACG	1 cut(s)	662
PkrI	GCNGC	1 cut(s)	537
PleI	GAGTC	2 cut(s)	26, 276
PpsI	GAGTC	2 cut(s)	26, 276
PshBI	ATTAAT	2 cut(s)	254, 588
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspLI	CGTACG	1 cut(s)	662
PstI	CTGCAG	2 cut(s)	223, 540
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	6 cut(s)	157, 217, 268, 664, 807, 915
RsaNI	GTAC	6 cut(s)	156, 216, 267, 663, 806, 914
SaqAI	TTAA	7 cut(s)	254, 588, 711, 744, 798, 906, 945
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	3 cut(s)	462, 634, 657
ScaI	AGTACT	1 cut(s)	157
SchI	GAGTC	2 cut(s)	26, 276
ScrFI	CCNGG	1 cut(s)	384
SetI	ASST	8 cut(s)	76, 171, 193, 308, 492, 537, 580, 668
SfcI	CTRYAG	2 cut(s)	219, 536
SfuI	TTCGAA	1 cut(s)	172
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	9 cut(s)	27, 552, 610, 670, 695, 737, 791, 845, 899
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	231, 501
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	146, 197, 348
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	3 cut(s)	14, 172, 465
TasI	AATT	9 cut(s)	27, 552, 610, 670, 695, 737, 791, 845, 899
TatI	WGTACW	3 cut(s)	155, 805, 913
TfiI	GAWTC	8 cut(s)	11, 51, 643, 758, 812, 866, 920, 959
Tru1I	TTAA	7 cut(s)	254, 588, 711, 744, 798, 906, 945
Tru9I	TTAA	7 cut(s)	254, 588, 711, 744, 798, 906, 945
TscAI	CASTG	3 cut(s)	151, 228, 322
TseI	GCWGC	1 cut(s)	535
TspDTI	ATGAA	8 cut(s)	299, 470, 540, 750, 804, 858, 912, 951
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	3 cut(s)	151, 228, 322
VspI	ATTAAT	2 cut(s)	254, 588
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	2 cut(s)	118, 280
XspI	CTAG	2 cut(s)	231, 501
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.