Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

9647471 .. 9649501

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCCCCACCTCTCCGACCCCAAAGCCATCGTCGCCATGACCCGCGCCGTCTCCGACGTCGCCCTGACCCGCTTCGTCCTCAACGCCCTCGACGACCGTCCTGACCACGAGACCGTCGACACCGCCAAGGCCAAGCTCGCCCACATCGAGTCCACTCTCACTAAGAAGCTCGAGGACCTCGTCCTCGCCTATATTGTTAACGGCGACTCGCATAACAAAACCAATAAGAAGAAGAAGAACAAGAAATCCAAAACCGACACAGCCGCCGTGCTTCCCACCGTCACCGTAGCCATCGCCGGTTCAATCATTCACAACGCTCAGTCCCTCGAACTCGCCACTCGGATAACTCGTGCCGTCACGAGTTTCCGAGTTGATGAGGTGGTGGTATTTAACAACAACAGTGAGTCTGGCTCTCCGGAAGCTAATAATTCCGATGTGGTTGGTAATGAGCTTCTGTCGTTCTTATTCCCAGGCGTGGGTCTGGTTGATAGTGGGCTGGAGCAAATGGAGATTGCAGAATCAAAAGATGAAGGAGAGTTGCTCAACTGGGGGGACATACAAAAGATGAAATATACATGGAACGTGGTATGTGAAGTATTGCGATTGCAGCCCCCAGCTAGTGGAACTTTTAGGGAGGCCATCACCGACTTCGTCTATGAGGGATATCTAATTCCAAAAGGAATGAAGTTACATTGGAATGCGTTTGCCACACATAAGAACCCGGAATACTTTCCAGATCCACACAAGTTTGAGCCGTCAAGGTTTGAAGGACAAGGACCACCTCCTTTCTCGTATGTTCCTTTTGGAGGAGGACCTCGAATGTGTCCCGGAAAAGAAAATGCTCGATTCCAGATATTGGTTTTCATGTATAACCTGGTCACCAGATTCAAGTGGGAGATGGTTTTTCCTGATGAGAAGATGGTCGTGGACCCTGTTCCTTTTCCTACCCAAGGACTTCCTATTCATCTATTTTCTCATAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

328

Amino Acids

36.59

Weight (kDa)

6.22

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltrn_RNA_3	PF02598	93 - 144	7.5e-10	Putative RNA methyltransferase
p450	PF00067	170 - 301	2.4e-37	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccB7I	CCANNNNNTGG	2 cut(s)	620, 856
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	4 cut(s)	43, 70, 123, 264
AclWI	GGATC	1 cut(s)	731
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	6 cut(s)	475, 476, 620, 806, 856, 950
AgsI	TTSAA	3 cut(s)	303, 767, 889
AjnI	CCWGG	2 cut(s)	469, 873
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	5 cut(s)	136, 169, 422, 451, 617
AluI	AGCT	5 cut(s)	136, 169, 422, 451, 617
Alw26I	GTCTC	2 cut(s)	55, 104
AlwI	GGATC	1 cut(s)	731
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	2 cut(s)	129, 636
ApeKI	GCWGC	1 cut(s)	607
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	4 cut(s)	175, 776, 812, 928
AsuC2I	CCSGG	2 cut(s)	722, 828
AsuHPI	GGTGA	3 cut(s)	274, 634, 871
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	4 cut(s)	175, 776, 812, 928
BauI	CACGAG	3 cut(s)	107, 348, 358
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	5 cut(s)	35, 299, 647, 892, 913
BceAI	ACGGC	5 cut(s)	32, 217, 251, 338, 739
BciT130I	CCWGG	2 cut(s)	471, 875
BcnI	CCSGG	2 cut(s)	722, 828
BcoDI	GTCTC	2 cut(s)	55, 104
BfaI	CTAG	1 cut(s)	618
BisI	GCNGC	2 cut(s)	264, 608
BlsI	GCNGC	2 cut(s)	265, 609
Bme1390I	CCNGG	4 cut(s)	471, 722, 828, 875
Bme18I	GGWCC	4 cut(s)	175, 776, 812, 928
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	4 cut(s)	175, 776, 812, 928
BmiI	GGNNCC	1 cut(s)	930
BmrFI	CCNGG	4 cut(s)	471, 722, 828, 875
BmrI	ACTGGG	1 cut(s)	556
BmuI	ACTGGG	1 cut(s)	556
BoxI	GACNNNNGTC	1 cut(s)	96
BplI	GAGNNNNNCTC	4 cut(s)	395, 427, 525, 557
BpmI	CTGGAG	1 cut(s)	518
BpuMI	CCSGG	2 cut(s)	722, 828
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	126, 469, 949
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	6 cut(s)	475, 476, 620, 806, 856, 950
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	551
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	471, 875
BseDI	CCNNGG	3 cut(s)	126, 469, 949
BseLI	CCNNNNNNNGG	6 cut(s)	475, 476, 620, 806, 856, 950
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	1 cut(s)	619
BseYI	CCCAGC	1 cut(s)	613
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	131, 638
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	4 cut(s)	297, 416, 722, 828
BslFI	GGGAC	3 cut(s)	307, 566, 810
BslI	CCNNNNNNNGG	6 cut(s)	475, 476, 620, 806, 856, 950
BsmAI	GTCTC	2 cut(s)	55, 104
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	3 cut(s)	307, 566, 810
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	131, 638
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	736
BspACI	CCGC	4 cut(s)	43, 70, 123, 264
BspANI	GGCC	2 cut(s)	131, 638
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	930
BspPI	GGATC	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	126, 469, 949
BssMI	GATC	1 cut(s)	736
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	3 cut(s)	107, 348, 358
BssT1I	CCWWGG	2 cut(s)	126, 949
Bst2BI	CACGAG	3 cut(s)	107, 348, 358
Bst2UI	CCWGG	2 cut(s)	471, 875
Bst4CI	ACNGT	5 cut(s)	98, 115, 280, 286, 401
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	162, 318
BstEII	GGTNACC	1 cut(s)	877
BstENI	CCTNNNNNAGG	2 cut(s)	804, 948
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	739
BstMAI	GTCTC	2 cut(s)	55, 104
BstMBI	GATC	1 cut(s)	736
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 137, 607
BstNI	CCWGG	2 cut(s)	471, 875
BstPAI	GACNNNNGTC	1 cut(s)	96
BstPI	GGTNACC	1 cut(s)	877
BstSCI	CCNGG	4 cut(s)	469, 720, 826, 873
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	131, 638
BtgZI	GCGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	4 cut(s)	175, 776, 812, 928
CsiI	ACCWGGT	1 cut(s)	873
CviAII	CATG	3 cut(s)	37, 576, 865
DdeI	CTNAG	2 cut(s)	162, 318
DpnI	GATC	1 cut(s)	738
DpnII	GATC	1 cut(s)	736
Eco130I	CCWWGG	2 cut(s)	126, 949
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	665
Eco47I	GGWCC	4 cut(s)	175, 776, 812, 928
Eco88I	CYCGRG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	877
EcoNI	CCTNNNNNAGG	2 cut(s)	804, 948
EcoO109I	RGGNCCY	2 cut(s)	175, 812
EcoO65I	GGTNACC	1 cut(s)	877
EcoRII	CCWGG	2 cut(s)	469, 873
EcoRV	GATATC	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	126, 949
ErhI	CCWWGG	2 cut(s)	126, 949
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	40, 579, 868
FaqI	GGGAC	3 cut(s)	307, 566, 810
FatI	CATG	3 cut(s)	36, 575, 864
FauI	CCCGC	2 cut(s)	50, 77
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	264, 608
Fsp4HI	GCNGC	2 cut(s)	264, 608
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	264, 608
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	131, 638
HapII	CCGG	4 cut(s)	297, 416, 722, 828
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	40, 579, 868
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	118, 199
HindII	GTYRAC	2 cut(s)	118, 199
HinfI	GANTC	6 cut(s)	149, 206, 404, 518, 846, 885
HpaI	GTTAAC	1 cut(s)	199
HpaII	CCGG	4 cut(s)	297, 416, 722, 828
HphI	GGTGA	3 cut(s)	274, 634, 871
Hpy166II	GTNNAC	4 cut(s)	118, 153, 199, 928
Hpy188I	TCNGA	5 cut(s)	16, 55, 342, 368, 433
Hpy188III	TCNNGA	6 cut(s)	101, 358, 416, 734, 850, 908
Hpy8I	GTNNAC	4 cut(s)	118, 153, 199, 928
Hpy99I	CGWCG	5 cut(s)	35, 59, 62, 95, 119
HpyAV	CCTTC	2 cut(s)	524, 761
HpyCH4III	ACNGT	5 cut(s)	98, 115, 280, 286, 401
HpyCH4IV	ACGT	2 cut(s)	57, 582
HpyCH4V	TGCA	2 cut(s)	515, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 137, 607
HpyF3I	CTNAG	2 cut(s)	162, 318
HpySE526I	ACGT	2 cut(s)	57, 582
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	40, 579, 868
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	415
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	736
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	1 cut(s)	619
MabI	ACCWGGT	1 cut(s)	873
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	2 cut(s)	57, 582
MaeIII	GTNAC	4 cut(s)	280, 355, 687, 877
MalI	GATC	1 cut(s)	738
MboI	GATC	1 cut(s)	736
MboII	GAAGA	4 cut(s)	241, 244, 247, 928
MflI	RGATCY	1 cut(s)	736
MluCI	AATT	2 cut(s)	427, 669
MlyI	GAGTC	3 cut(s)	158, 200, 413
MmeI	TCCRAC	2 cut(s)	39, 78
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	2 cut(s)	198, 390
MslI	CAYNNNNRTG	1 cut(s)	696
MspI	CCGG	4 cut(s)	297, 416, 722, 828
MspR9I	CCNGG	4 cut(s)	471, 722, 828, 875
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	471, 875
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	32, 137, 607
NciI	CCSGG	2 cut(s)	722, 828
NdeII	GATC	1 cut(s)	736
NlaIII	CATG	3 cut(s)	40, 579, 868
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	3 cut(s)	280, 355, 877
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	5 cut(s)	90, 114, 144, 177, 346
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	518, 846, 885
PflFI	GACNNNGTC	2 cut(s)	179, 650
PflMI	CCANNNNNTGG	2 cut(s)	620, 856
PfoI	TCCNGGA	1 cut(s)	826
PkrI	GCNGC	2 cut(s)	265, 609
PleI	GAGTC	3 cut(s)	157, 200, 412
PpsI	GAGTC	3 cut(s)	157, 200, 412
PpuMI	RGGWCCY	2 cut(s)	175, 812
PshAI	GACNNNNGTC	1 cut(s)	96
Psp5II	RGGWCCY	2 cut(s)	175, 812
Psp6I	CCWGG	2 cut(s)	469, 873
PspEI	GGTNACC	1 cut(s)	877
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	2 cut(s)	469, 873
PspN4I	GGNNCC	1 cut(s)	930
PspPI	GGNCC	4 cut(s)	175, 776, 812, 928
PspPPI	RGGWCCY	2 cut(s)	175, 812
PspXI	VCTCGAGB	1 cut(s)	170
PsrI	GAACNNNNNNTAC	2 cut(s)	710, 742
PsuI	RGATCY	1 cut(s)	736
PsyI	GACNNNGTC	2 cut(s)	179, 650
RseI	CAYNNNNRTG	1 cut(s)	696
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	198, 390
SatI	GCNGC	2 cut(s)	264, 608
Sau3AI	GATC	1 cut(s)	736
Sau96I	GGNCC	4 cut(s)	175, 776, 812, 928
SchI	GAGTC	3 cut(s)	158, 200, 413
ScrFI	CCNGG	4 cut(s)	471, 722, 828, 875
SexAI	ACCWGGT	1 cut(s)	873
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	4 cut(s)	175, 776, 812, 928
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	427, 669
SsiI	CCGC	4 cut(s)	43, 70, 123, 264
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	4 cut(s)	469, 720, 826, 873
StyI	CCWWGG	2 cut(s)	126, 949
TaaI	ACNGT	5 cut(s)	98, 115, 280, 286, 401
TaiI	ACGT	2 cut(s)	60, 585
TaqI	TCGA	7 cut(s)	90, 117, 147, 171, 327, 817, 844
TasI	AATT	2 cut(s)	427, 669
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	3 cut(s)	518, 846, 885
Tru1I	TTAA	2 cut(s)	198, 390
Tru9I	TTAA	2 cut(s)	198, 390
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	3 cut(s)	280, 355, 877
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	3 cut(s)	280, 355, 877
TspDTI	ATGAA	5 cut(s)	543, 581, 698, 853, 953
TspRI	CASTG	1 cut(s)	406
Tth111I	GACNNNGTC	2 cut(s)	179, 650
Van91I	CCANNNNNTGG	2 cut(s)	620, 856
VpaK11BI	GGWCC	4 cut(s)	175, 776, 812, 928
XagI	CCTNNNNNAGG	2 cut(s)	804, 948
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	1 cut(s)	618
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.